mRNA_P-littoralis_Contig1436.3.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1436.3.1
Unique NamemRNA_P-littoralis_Contig1436.3.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig1436.3.1 vs. uniprot
Match: A0A6H5JBE2_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBE2_9PHAE)

HSP 1 Score: 449 bits (1156), Expect = 1.040e-155
Identity = 213/254 (83.86%), Postives = 225/254 (88.58%), Query Frame = 1
Query:    1 VMACLTILARGNCFGSIYMFSWMSSAVVQKTFHKFCKHFATGMYDEHIFLPTDENGELDRVMGQYEKLGFPGAMGPTDVTHIALGRCPYNQARSYTGKEGKPTIGYQVTVNHAGRVLAVTEGFTGSTNDKTIICWDAAVERGRKDKQYTEKTFDVYNKDGTTRTLKGCYLIVDNGYHKWRTLIEPPKYPLSVGDLLFSKWLESVRKDVECFFGILKIRFRILKLAMTYQEQERIVYVFFTCCILHNMLHTFDGM 762
            V+ACLTIL RGN FGSIY  SWMS+  VQK FH+FC+HFAT MYDEHIFLP++ENGELDRVMGQYEKLGFPGAMG TDVTHI   RCPYNQ RSYTGKEGKPT+GYQVTVNHAGRVLAVTEGFTGSTNDKTIIC D AV+R R DKQY EK F V+ KDGTT TLKGCYLIVDNGYHKWR LIEP KYPLS  DLLFSK LESVRKDVECFFGILK+RFRILKLAMTYQ+QER+ YVFFTCCILHNMLHT DGM
Sbjct:  128 VLACLTILGRGNVFGSIYNLSWMSTPTVQKVFHQFCEHFATEMYDEHIFLPSEENGELDRVMGQYEKLGFPGAMGSTDVTHIGWSRCPYNQGRSYTGKEGKPTVGYQVTVNHAGRVLAVTEGFTGSTNDKTIICCDEAVDRIRTDKQYAEKPFTVHKKDGTTETLKGCYLIVDNGYHKWRMLIEPSKYPLSEADLLFSKRLESVRKDVECFFGILKMRFRILKLAMTYQKQERLDYVFFTCCILHNMLHTHDGM 381          
BLAST of mRNA_P-littoralis_Contig1436.3.1 vs. uniprot
Match: A0A6H5JHI0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHI0_9PHAE)

HSP 1 Score: 418 bits (1075), Expect = 2.320e-144
Identity = 195/255 (76.47%), Postives = 214/255 (83.92%), Query Frame = 1
Query:    1 VMACLTILARGNCFGSIYMFSWMSSAVVQKTFHKFCKHFATGMYDEHIFLPTDENGELDRVMGQYEKLGFPGAMGPTDVTHIALGRCPYNQARSYTGKEGKPTIGYQVTVNHAGRVLAVTEGFTGSTNDKTIICWDAAVERGRKDKQYTEKTFDVYNKDGTTRTLKGCYLIVDNGYHKWRTLIEPPKYPLSVGDLLFSKWLESVRKDVECFFGILKIRFRILKLAMTYQEQERIVYVFFTCCILHNMLHTFDGMD 765
            V+A LTIL RGNCF SIY  SWMS+  VQ  FHKFCKHFA  MYDEHI+LP+++NGELD VM QY++LGF GAMG  DVTHI   +CPYN ARSYTGKEG PT+GYQVTVNHAGR +AVTEGFT STNDKT +CWDA VE+ R D QYTEKTFDVYN+DGTT TLKGCYL+VDNGYHKW+ L+EP KYPLS  D+LFSK LESVRKDVECFFGILK  FRI K+AM Y EQERI  VFFTCCILHNMLHTFDGMD
Sbjct:   99 VLAWLTILGRGNCFASIYQVSWMSAKTVQTMFHKFCKHFAREMYDEHIYLPSEQNGELDHVMKQYDRLGFSGAMGSMDVTHIGWSKCPYNLARSYTGKEGVPTVGYQVTVNHAGRAIAVTEGFTDSTNDKTTVCWDAVVEKIRTDNQYTEKTFDVYNEDGTTTTLKGCYLLVDNGYHKWKILMEPTKYPLSENDILFSKRLESVRKDVECFFGILKGCFRIQKVAMAYHEQERIDNVFFTCCILHNMLHTFDGMD 353          
BLAST of mRNA_P-littoralis_Contig1436.3.1 vs. uniprot
Match: A0A6H5KNX4_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNX4_9PHAE)

HSP 1 Score: 401 bits (1031), Expect = 5.610e-137
Identity = 199/283 (70.32%), Postives = 215/283 (75.97%), Query Frame = 1
Query:    1 VMACLTILARGNCFGSIYMFSWMSSAVVQKTFHKFCKHFATGMYDEHIFLPTDENGELDRVMGQYEKLGFPGAMGPTDVTHIALGRCPYNQARSYTGKEGKPTIGYQVTVNHAGRVLAVTEGFTGSTNDKTIICWDAAVERGRKDKQYT----------------------------EKTFDVYNKDGTTRTLKGCYLIVDNGYHKWRTLIEPPKYPLSVGDLLFSKWLESVRKDVECFFGILKIRFRILKLAMTYQEQERIVYVFFTCCILHNMLHTFDGMD 765
            V+A LTIL RGNCF SIY  SWMS+  VQ  FHKFC+HFA  MYDE I LPT+E+G+LD VM QY++LGF GA+G  DVTHIA  RCPYNQARSYTGKEG PTI YQVTV+HAGR +AVTEGFTGSTNDKTI+CWD AVE+   DK YT                            EKTFDVYN+DGTT TLKGCYL+VDNGYHKW+ LIEP KYPLS  DLLFSK LESVRKDVECFFGILK RFRILKLAM YQ QERI  VFFTC ILHNMLHTFDGMD
Sbjct:   86 VLAWLTILGRGNCFASIYQMSWMSAKTVQGMFHKFCRHFAREMYDEQIHLPTEESGKLDHVMKQYDRLGFTGAVGSMDVTHIAWSRCPYNQARSYTGKEGFPTIAYQVTVDHAGRAIAVTEGFTGSTNDKTIVCWDTAVEKIWTDKHYTXXXXXXXXXXXXXXXXXXXXXXXXXXXXEKTFDVYNEDGTTTTLKGCYLLVDNGYHKWQILIEPSKYPLSENDLLFSKRLESVRKDVECFFGILKGRFRILKLAMEYQSQERIDNVFFTCYILHNMLHTFDGMD 368          
BLAST of mRNA_P-littoralis_Contig1436.3.1 vs. uniprot
Match: A0A6H5JUX7_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUX7_9PHAE)

HSP 1 Score: 373 bits (958), Expect = 1.680e-127
Identity = 181/255 (70.98%), Postives = 201/255 (78.82%), Query Frame = 1
Query:    1 VMACLTILARGNCFGSIYMFSWMSSAVVQKTFHKFCKHFATGMYDEHIFLPTDENGELDRVMGQYEKLGFPGAMGPTDVTHIALGRCPYNQARSYTGKEGKPTIGYQVTVNHAGRVLAVTEGFTGSTNDKTIICWDAAVERGRKDKQYTEKTFDVYNKDGTTRTLKGCYLIVDNGYHKWRTLIEPPKYPLSVGDLLFSKWLESVRKDVECFFGILKIRFRILKLAMTYQEQERIVYVFFTCCILHNMLHTFDGMD 765
            V+A LTIL +GNCF SI+  SWMS+  VQ  FHKFC+ FA  MYDEHI LP +E+G+L  VM QY++LG                 CPYNQARSYTGK+  PTI YQVTV+HA R +AVTEGFTGSTNDKTI+CWDAAV++ R DKQYTEKTFD+YN+DGTT TLKGCY + DNGYHKW+ LIEP KYPLS  DLLFSK LESVRKDVECFFGILK RFRILKLAM YQ QERI  VFFTCCILHNMLHTFDGMD
Sbjct:   21 VLAWLTILGKGNCFASIFQMSWMSAKTVQGVFHKFCRLFAREMYDEHIHLPAEESGKLHHVMKQYDRLG-----------------CPYNQARSYTGKDWFPTIAYQVTVDHASRAIAVTEGFTGSTNDKTIVCWDAAVDKIRTDKQYTEKTFDLYNEDGTTTTLKGCYFLDDNGYHKWQILIEPSKYPLSEDDLLFSKRLESVRKDVECFFGILKGRFRILKLAMAYQSQERIDNVFFTCCILHNMLHTFDGMD 258          
BLAST of mRNA_P-littoralis_Contig1436.3.1 vs. uniprot
Match: D7FSK2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSK2_ECTSI)

HSP 1 Score: 365 bits (937), Expect = 7.280e-125
Identity = 172/213 (80.75%), Postives = 187/213 (87.79%), Query Frame = 1
Query:  127 MYDEHIFLPTDENGELDRVMGQYEKLGFPGAMGPTDVTHIALGRCPYNQARSYTGKEGKPTIGYQVTVNHAGRVLAVTEGFTGSTNDKTIICWDAAVERGRKDKQYTEKTFDVYNKDGTTRTLKGCYLIVDNGYHKWRTLIEPPKYPLSVGDLLFSKWLESVRKDVECFFGILKIRFRILKLAMTYQEQERIVYVFFTCCILHNMLHTFDGMD 765
            MYDEHI LPT+E+G+LD V+ QY++LGF GAMG  DVTHIA  RCPYNQARSYTGKEG PTIGYQVTV+HAGR +AVTEGFTGSTNDKT +CWDAAVE+ R DKQYTEKTFDVYN+DGTT TLKGCY++VDNGYHKW+ LIEP KYPLS  DLLFSK LESVRKDVECFFGILK R RIL LAM +Q QERI  VFFTCCILHNMLHTFDGMD
Sbjct:    1 MYDEHIHLPTEESGKLDLVIEQYDRLGFTGAMGSMDVTHIAWSRCPYNQARSYTGKEGFPTIGYQVTVDHAGRAIAVTEGFTGSTNDKTTVCWDAAVEKIRTDKQYTEKTFDVYNQDGTTTTLKGCYVLVDNGYHKWQILIEPSKYPLSENDLLFSKRLESVRKDVECFFGILKGRLRILMLAMAFQSQERIDNVFFTCCILHNMLHTFDGMD 213          
BLAST of mRNA_P-littoralis_Contig1436.3.1 vs. uniprot
Match: A0A6H5KY50_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KY50_9PHAE)

HSP 1 Score: 344 bits (882), Expect = 7.740e-115
Identity = 165/256 (64.45%), Postives = 199/256 (77.73%), Query Frame = 1
Query:    1 VMACLTILARGNCFGSIYMFSWMSSAVVQKTFHKFCKHFATGMYDEHIFLPTDENGELDRVMGQYEKLGFPGAMGPTDVTHIALGRCPYNQARSYTGKEGKPTIGYQVTVNHAGRVLAVTEGFTGSTNDKTIICWDAAVERGRKDKQYTEKTFDVYNKDGTTRTLKGCYLIVDNGYHKWRTLIEPPKYPLSVGDLLFSKWLESVRKDVECFFGILKIRFRILKLAMTYQEQERIVYVFFTCCILHNMLHTFDGMDD 768
            V+ACL IL+RGN F  IY  S++S   V  TFH+FCK+FA  +YDE+++LPT E  +L +VM QY+++GFPGA+G TDVTHI  G CPYNQAR YTGKEGKPT+ +QVTV+H+GRVLAVT GFTG+TNDKTII +D AV R R D  YTE+ + +Y +DG     KGCYL+VDNGYHKWRTLI P K P+  GDL+FSK LES RKDVEC+FGILK RFRI KLA+ + +QE I  VFFTCCILHNMLH+FD   D
Sbjct:   84 VLACLQILSRGNVFADIYHMSFISFQTVASTFHRFCKYFAAELYDEYVYLPTGE--DLRKVMEQYDRIGFPGAVGSTDVTHIYWGMCPYNQARIYTGKEGKPTVAFQVTVDHSGRVLAVTRGFTGATNDKTIIRYDKAVTRIRTDPVYTEQKYKLYAQDGQQFEEKGCYLLVDNGYHKWRTLIPPSKCPIDRGDLIFSKRLESARKDVECYFGILKGRFRINKLAIGFHKQEYIDNVFFTCCILHNMLHSFDNRGD 337          
BLAST of mRNA_P-littoralis_Contig1436.3.1 vs. uniprot
Match: A0A6H5JPH7_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPH7_9PHAE)

HSP 1 Score: 344 bits (882), Expect = 1.330e-113
Identity = 165/256 (64.45%), Postives = 199/256 (77.73%), Query Frame = 1
Query:    1 VMACLTILARGNCFGSIYMFSWMSSAVVQKTFHKFCKHFATGMYDEHIFLPTDENGELDRVMGQYEKLGFPGAMGPTDVTHIALGRCPYNQARSYTGKEGKPTIGYQVTVNHAGRVLAVTEGFTGSTNDKTIICWDAAVERGRKDKQYTEKTFDVYNKDGTTRTLKGCYLIVDNGYHKWRTLIEPPKYPLSVGDLLFSKWLESVRKDVECFFGILKIRFRILKLAMTYQEQERIVYVFFTCCILHNMLHTFDGMDD 768
            V+ACL IL+RGN F  IY  S++S   V  TFH+FCK+FA  +YDE+++LPT E  +L +VM QY+++GFPGA+G TDVTHI  G CPYNQAR YTGKEGKPT+ +QVTV+H+GRVLAVT GFTG+TNDKTII +D AV R R D  YTE+ + +Y +DG     KGCYL+VDNGYHKWRTLI P K P+  GDL+FSK LES RKDVEC+FGILK RFRI KLA+ + +QE I  VFFTCCILHNMLH+FD   D
Sbjct:  175 VLACLQILSRGNVFADIYHMSFISFQTVASTFHRFCKYFAAELYDEYVYLPTGE--DLRKVMEQYDRIGFPGAVGSTDVTHIYWGMCPYNQARIYTGKEGKPTVAFQVTVDHSGRVLAVTRGFTGATNDKTIIRYDKAVTRIRTDPVYTEQKYKLYAQDGQQFEEKGCYLLVDNGYHKWRTLIPPSKCPIDRGDLIFSKRLESARKDVECYFGILKGRFRINKLAIGFHKQEYIDNVFFTCCILHNMLHSFDNRGD 428          
BLAST of mRNA_P-littoralis_Contig1436.3.1 vs. uniprot
Match: A0A6H5JAU4_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAU4_9PHAE)

HSP 1 Score: 341 bits (875), Expect = 9.630e-113
Identity = 167/256 (65.23%), Postives = 194/256 (75.78%), Query Frame = 1
Query:    1 VMACLTILARGNCFGSIYMFSWMSSAVVQKTFHKFCKHFATGMYDEHIFLPTDENGELDRVMGQYEKLGFPGAMGPTDVTHIALGRCPYNQARSYTGKEGKPTIGYQVTVNHAGRVLAVTEGFTGSTNDKTIICWDAAVERGRKDKQYTEKTFDVYNKDGTTRTLKGCYLIVDNGYHKWRTLIEPPKYPLSVGDLLFSKWLESVRKDVECFFGILKIRFRILKLAMTYQEQERIVYVFFTCCILHNMLHTFDGMDD 768
            V+ACL ILARGNCF  IY  S++S      TFH+F ++FA  MY EHIFLPT +  +  +VM QY++LGF GA G TDVTHI  G CPYNQARSYTGKEG PT+ YQVTV+H  RVLAVT GFTGSTNDK+II +D AV + R+D  Y+EK F VY  DGT   LKGCYL+VDNGYHKW TLI P KYP+   DL FSK LESVRKDVECFFGI+K RFRILKL++ Y +QE I  VFFTCCILHNMLH++D   +
Sbjct:  159 VLACLQILARGNCFADIYHMSFISMQTAAATFHRFTRYFAREMYAEHIFLPTGDYQK--KVMTQYDRLGFSGATGSTDVTHIPWGMCPYNQARSYTGKEGYPTVAYQVTVDHTKRVLAVTPGFTGSTNDKSIIRYDTAVTKIREDPIYSEKEFTVYEADGTPYQLKGCYLLVDNGYHKWVTLIPPSKYPIDQNDLAFSKRLESVRKDVECFFGIVKGRFRILKLSIPYHKQEDIDNVFFTCCILHNMLHSYDNKSE 412          
BLAST of mRNA_P-littoralis_Contig1436.3.1 vs. uniprot
Match: D7FPI7_ECTSI (Transposon protein, putative, Pong sub-class n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPI7_ECTSI)

HSP 1 Score: 308 bits (790), Expect = 6.550e-101
Identity = 141/189 (74.60%), Postives = 157/189 (83.07%), Query Frame = 1
Query:    1 VMACLTILARGNCFGSIYMFSWMSSAVVQKTFHKFCKHFATGMYDEHIFLPTDENGELDRVMGQYEKLGFPGAMGPTDVTHIALGRCPYNQARSYTGKEGKPTIGYQVTVNHAGRVLAVTEGFTGSTNDKTIICWDAAVERGRKDKQYTEKTFDVYNKDGTTRTLKGCYLIVDNGYHKWRTLIEPPKYP 567
            V+A LTIL RGNCF SIY  SWMS+A VQ  FH FCKHFA  MYDEHI+LP+++NGELD VM QY++LGF GAMG  DVTHI   +CPYN  RSYTGKEG PTIGYQVTVNHAGR  AVTEGFTGSTNDKTI+CWDAAVE+ R DKQYTEKTFDVYN+DGTT TLKGCYL+VDNGYHKW+ L+   + P
Sbjct:  126 VLAWLTILGRGNCFASIYQMSWMSAATVQAMFHMFCKHFAREMYDEHIYLPSEQNGELDHVMKQYDRLGFSGAMGSMDVTHIVWNKCPYNLPRSYTGKEGVPTIGYQVTVNHAGRASAVTEGFTGSTNDKTIVCWDAAVEKIRTDKQYTEKTFDVYNEDGTTTTLKGCYLLVDNGYHKWQILMGAHQVP 314          
BLAST of mRNA_P-littoralis_Contig1436.3.1 vs. uniprot
Match: A0A6H5L0X4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0X4_9PHAE)

HSP 1 Score: 301 bits (771), Expect = 2.410e-97
Identity = 157/255 (61.57%), Postives = 173/255 (67.84%), Query Frame = 1
Query:    1 VMACLTILARGNCFGSIYMFSWMSSAVVQKTFHKFCKHFATGMYDEHIFLPTDENGELDRVMGQYEKLGFPGAMGPTDVTHIALGRCPYNQARSYTGKEGKPTIGYQVTVNHAGRVLAVTEGFTGSTNDKTIICWDAAVERGRKDKQYTEKTFDVYNKDGTTRTLKGCYLIVDNGYHKWRTLIEPPKYPLSVGDLLFSKWLESVRKDVECFFGILKIRFRILKLAMTYQEQERIVYVFFTCCILHNMLHTFDGMD 765
            V+A LTIL R NCF SI+  SWMS+  VQ  FHKFC+HFA  MYDEHI L  +E+G+LD V+      G                 CPYNQARSYTGKEG PTI YQV                      TI+CWDAAVE+ R DKQYTEKTFDVYN+DGTT TLKG YL+VDNGYHKW+ LIEP KYPLS  DLLFSK L+SVR+D     GILK RFRILKLAM YQ QERI  VFFTCCI+HNMLHTFDGMD
Sbjct:  173 VLAWLTILGRNNCFASIFQVSWMSAKTVQGMFHKFCRHFARDMYDEHIHLLAEESGKLDHVVRSGWVYG-----------------CPYNQARSYTGKEGFPTIAYQVV---------------------TIVCWDAAVEKIRTDKQYTEKTFDVYNEDGTTTTLKGWYLLVDNGYHKWQILIEPSKYPLSENDLLFSKRLDSVRRDGSASDGILKGRFRILKLAMAYQSQERIDDVFFTCCIMHNMLHTFDGMD 389          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1436.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JBE2_9PHAE1.040e-15583.86Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JHI0_9PHAE2.320e-14476.47Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KNX4_9PHAE5.610e-13770.32DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5JUX7_9PHAE1.680e-12770.98DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]
D7FSK2_ECTSI7.280e-12580.75Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KY50_9PHAE7.740e-11564.45Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JPH7_9PHAE1.330e-11364.45Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JAU4_9PHAE9.630e-11365.23Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
D7FPI7_ECTSI6.550e-10174.60Transposon protein, putative, Pong sub-class n=1 T... [more]
A0A6H5L0X4_9PHAE2.410e-9761.57Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1436contigP-littoralis_Contig1436:13152..14239 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D7FSK2
PFAMsPlant_tran
Model size768
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons2
Evalue1.15e-125
EggNOG OGs2E2RF@1|root,2S9YA@2759|Eukaryota
DescriptionPlant transposon protein
Cds size765
COG categoryS
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789676.213357-UTR-P-littoralis_Contig1436:13151..131541680789676.213357-UTR-P-littoralis_Contig1436:13151..13154Pylaiella littoralis U1_48UTRP-littoralis_Contig1436 13152..13154 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789676.223506-CDS-P-littoralis_Contig1436:13154..136851680789676.223506-CDS-P-littoralis_Contig1436:13154..13685Pylaiella littoralis U1_48CDSP-littoralis_Contig1436 13155..13685 +
1680789676.2318788-CDS-P-littoralis_Contig1436:14005..142391680789676.2318788-CDS-P-littoralis_Contig1436:14005..14239Pylaiella littoralis U1_48CDSP-littoralis_Contig1436 14006..14239 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1436.3.1prot_P-littoralis_Contig1436.3.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1436 13155..14239 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1436.3.1

>prot_P-littoralis_Contig1436.3.1 ID=prot_P-littoralis_Contig1436.3.1|Name=mRNA_P-littoralis_Contig1436.3.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=255bp
MACLTILARGNCFGSIYMFSWMSSAVVQKTFHKFCKHFATGMYDEHIFLP
TDENGELDRVMGQYEKLGFPGAMGPTDVTHIALGRCPYNQARSYTGKEGK
PTIGYQVTVNHAGRVLAVTEGFTGSTNDKTIICWDAAVERGRKDKQYTEK
TFDVYNKDGTTRTLKGCYLIVDNGYHKWRTLIEPPKYPLSVGDLLFSKWL
ESVRKDVECFFGILKIRFRILKLAMTYQEQERIVYVFFTCCILHNMLHTF
DGMDD
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mRNA from alignment at P-littoralis_Contig1436:13152..14239+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1436.3.1 ID=mRNA_P-littoralis_Contig1436.3.1|Name=mRNA_P-littoralis_Contig1436.3.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1088bp|location=Sequence derived from alignment at P-littoralis_Contig1436:13152..14239+ (Pylaiella littoralis U1_48)
GTGATGGCCTGCCTGACCATACTCGCCAGAGGGAACTGTTTCGGAAGCAT CTACATGTTTTCGTGGATGAGCAGCGCGGTAGTGCAGAAGACGTTCCACA AATTCTGCAAGCACTTCGCGACGGGAATGTACGACGAGCACATCTTCCTC CCGACGGACGAGAATGGCGAGCTTGACCGCGTTATGGGACAGTACGAGAA GCTGGGGTTCCCGGGCGCAATGGGTCCCACTGATGTTACCCATATAGCGT TGGGTAGGTGCCCCTACAACCAAGCCCGCTCGTACACTGGAAAAGAAGGC AAGCCTACCATCGGGTACCAGGTGACGGTCAACCACGCTGGGCGCGTGTT GGCCGTGACAGAGGGGTTCACAGGGTCCACCAACGACAAGACGATCATCT GCTGGGATGCAGCGGTGGAACGGGGCCGCAAAGACAAGCAGTACACGGAA AAGACATTTGACGTCTACAACAAGGATGGCACCACGCGAACCCTGAAGGG TTGCTACTTGATCGTTGACAACGGTTACCACAAGGTGAAAAATGTTTGGT ATCACATGGAACGCGATTGTGTTTTTTTCGAATCGCATGGGCATTTTTGG CCGAACAAAAGTTCCTCCCAGTTAGCCGCGCTCGAAATTGTCCCCCAGGT CCTCTTGGGTGCTGTGGACATGATTGTGTGACACTGAATTGCTCCCCATA ATGGTGTTGTTGAAGCTGTGGGGGGATGAAGCAGTTGACAAGTTTACACA GTTCGTTTAGTACCCGATCCTCGAAACGAAACGCGGTACAGGAATTATTA ATACTTGATCATTCCAGGTGCACCCGTTTTTTTGTGTTCGTTCGTTCTAT TCAGTGGCGGACGCTGATCGAGCCCCCCAAGTACCCGCTGAGCGTAGGCG ACTTGCTCTTCTCGAAGTGGCTGGAGAGTGTAAGGAAGGATGTGGAGTGC TTCTTCGGCATTCTGAAGATTCGCTTCAGAATCCTCAAGCTCGCCATGAC CTACCAGGAGCAGGAGCGCATTGTCTACGTGTTCTTCACGTGCTGCATCC TGCACAACATGCTGCATACCTTCGACGGCATGGACGAC
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Coding sequence (CDS) from alignment at P-littoralis_Contig1436:13152..14239+

>mRNA_P-littoralis_Contig1436.3.1 ID=mRNA_P-littoralis_Contig1436.3.1|Name=mRNA_P-littoralis_Contig1436.3.1|organism=Pylaiella littoralis U1_48|type=CDS|length=765bp|location=Sequence derived from alignment at P-littoralis_Contig1436:13152..14239+ (Pylaiella littoralis U1_48)
ATGGCCTGCCTGACCATACTCGCCAGAGGGAACTGTTTCGGAAGCATCTA
CATGTTTTCGTGGATGAGCAGCGCGGTAGTGCAGAAGACGTTCCACAAAT
TCTGCAAGCACTTCGCGACGGGAATGTACGACGAGCACATCTTCCTCCCG
ACGGACGAGAATGGCGAGCTTGACCGCGTTATGGGACAGTACGAGAAGCT
GGGGTTCCCGGGCGCAATGGGTCCCACTGATGTTACCCATATAGCGTTGG
GTAGGTGCCCCTACAACCAAGCCCGCTCGTACACTGGAAAAGAAGGCAAG
CCTACCATCGGGTACCAGGTGACGGTCAACCACGCTGGGCGCGTGTTGGC
CGTGACAGAGGGGTTCACAGGGTCCACCAACGACAAGACGATCATCTGCT
GGGATGCAGCGGTGGAACGGGGCCGCAAAGACAAGCAGTACACGGAAAAG
ACATTTGACGTCTACAACAAGGATGGCACCACGCGAACCCTGAAGGGTTG
CTACTTGATCGTTGACAACGGTTACCACAAGTGGCGGACGCTGATCGAGC
CCCCCAAGTACCCGCTGAGCGTAGGCGACTTGCTCTTCTCGAAGTGGCTG
GAGAGTGTAAGGAAGGATGTGGAGTGCTTCTTCGGCATTCTGAAGATTCG
CTTCAGAATCCTCAAGCTCGCCATGACCTACCAGGAGCAGGAGCGCATTG
TCTACGTGTTCTTCACGTGCTGCATCCTGCACAACATGCTGCATACCTTC
GACGGCATGGACGAC
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