mRNA_P-littoralis_Contig1435.7.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1435.7.1
Unique NamemRNA_P-littoralis_Contig1435.7.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig1435.7.1 vs. uniprot
Match: A0A6H5JJM4_9PHAE (Uncharacterized protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJM4_9PHAE)

HSP 1 Score: 305 bits (780), Expect = 8.480e-96
Identity = 149/151 (98.68%), Postives = 150/151 (99.34%), Query Frame = 1
Query:   13 MEHSREAGKVADVDSRTVRRWVKEFCKGGSFVVRKRQYNKREPHSYIDDEDIRGRLREYIDRRLYRRKKDEPRLRIADVQKWINEDLLKEELAGTRGISRRTVHKWMQKLGFRWSRHHKCVYVDGHNRPDVVTDRRSFVELLKRLHQNMSM 465
            MEHSREAGKVADVDSRTVRRWVKEFCKG SFVVRKRQYNKREPHSYIDDEDIRGRLREYIDRRLYRRKKDEPRLRIADVQKWINEDLLKEELAGTRGISRRTVHKWMQKLGFRWSRHHKCVYVDGHNRPDVVTDRRSFVELLKRLHQNMS+
Sbjct:    1 MEHSREAGKVADVDSRTVRRWVKEFCKGDSFVVRKRQYNKREPHSYIDDEDIRGRLREYIDRRLYRRKKDEPRLRIADVQKWINEDLLKEELAGTRGISRRTVHKWMQKLGFRWSRHHKCVYVDGHNRPDVVTDRRSFVELLKRLHQNMSI 151          
BLAST of mRNA_P-littoralis_Contig1435.7.1 vs. uniprot
Match: A0A6H5K550_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K550_9PHAE)

HSP 1 Score: 276 bits (707), Expect = 5.330e-85
Identity = 135/155 (87.10%), Postives = 143/155 (92.26%), Query Frame = 1
Query:    1 GVAKMEHSREAGKVADVDSRTVRRWVKEFCKGGSFVVRKRQYNKREPHSYIDDEDIRGRLREYIDRRLYRRKKDEPRLRIADVQKWINEDLLKEELAGTRGISRRTVHKWMQKLGFRWSRHHKCVYVDGHNRPDVVTDRRSFVELLKRLHQNMSM 465
            GV KM HSRE G+V++VD  TVRRWVKEFC GGSFVVRKRQYNKRE HSYIDDED+R RLREYIDRRLYRRKK+EPRLRIADVQKWI+EDLLKEELAGTRG+S RTVHKWMQKLGFRWSRHHKCVYVDGHNRPDVVTDRRSFV LLKRL Q MS+
Sbjct:   41 GVTKMAHSREVGEVSEVDPTTVRRWVKEFCNGGSFVVRKRQYNKREAHSYIDDEDVRYRLREYIDRRLYRRKKNEPRLRIADVQKWIHEDLLKEELAGTRGVSWRTVHKWMQKLGFRWSRHHKCVYVDGHNRPDVVTDRRSFVALLKRLRQKMSI 195          
BLAST of mRNA_P-littoralis_Contig1435.7.1 vs. uniprot
Match: A0A6H5JH07_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JH07_9PHAE)

HSP 1 Score: 268 bits (685), Expect = 2.260e-82
Identity = 130/146 (89.04%), Postives = 137/146 (93.84%), Query Frame = 1
Query:   28 EAGKVADVDSRTVRRWVKEFCKGGSFVVRKRQYNKREPHSYIDDEDIRGRLREYIDRRLYRRKKDEPRLRIADVQKWINEDLLKEELAGTRGISRRTVHKWMQKLGFRWSRHHKCVYVDGHNRPDVVTDRRSFVELLKRLHQNMSM 465
            E G+V++VD  TVRRWVKEFC GGSFVVRKRQYNKRE HSYIDDED+R RLREYIDRRLYRRKKDEPRLRIADVQKWI+EDLLKEELAGTRG+SRRTVHKWMQKLGFRWSRHHKCVYVDGHNRPDVVTDRRSFV LLKRL Q MS+
Sbjct:  367 EVGEVSEVDPTTVRRWVKEFCNGGSFVVRKRQYNKREAHSYIDDEDVRYRLREYIDRRLYRRKKDEPRLRIADVQKWIHEDLLKEELAGTRGVSRRTVHKWMQKLGFRWSRHHKCVYVDGHNRPDVVTDRRSFVALLKRLRQKMSI 512          
BLAST of mRNA_P-littoralis_Contig1435.7.1 vs. uniprot
Match: A0A6H5KM05_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KM05_9PHAE)

HSP 1 Score: 253 bits (646), Expect = 1.610e-80
Identity = 120/146 (82.19%), Postives = 133/146 (91.10%), Query Frame = 1
Query:    1 GVAKMEHSREAGKVADVDSRTVRRWVKEFCKGGSFVVRKRQYNKREPHSYIDDEDIRGRLREYIDRRLYRRKKDEPRLRIADVQKWINEDLLKEELAGTRGISRRTVHKWMQKLGFRWSRHHKCVYVDGHNRPDVVTDRRSFVELL 438
            GVAKM+HSR A +VA V+S+ VRRWVKEFCKGG+FVV KRQYNKREPHS+I+DED R  LR YIDR+LYRRKKDEPRLRIADVQKWINE+LLK+ELAGT+G+SRRTVHKWMQKLGFRWSRHHKCVYVDGHNRPD+V DRR FV  L
Sbjct:  283 GVAKMDHSRAAAEVAKVESKAVRRWVKEFCKGGAFVVPKRQYNKREPHSFIEDEDKRNHLRGYIDRKLYRRKKDEPRLRIADVQKWINEELLKDELAGTKGVSRRTVHKWMQKLGFRWSRHHKCVYVDGHNRPDIVNDRRGFVAYL 428          
BLAST of mRNA_P-littoralis_Contig1435.7.1 vs. uniprot
Match: D7FZS4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZS4_ECTSI)

HSP 1 Score: 236 bits (602), Expect = 1.670e-76
Identity = 117/139 (84.17%), Postives = 122/139 (87.77%), Query Frame = 1
Query:    1 GVAKMEHSREAGKVADVDSRTVRRWVKEFCKGGSFVVRKRQYNKREPHSYIDDEDIRGRLREYIDRRLYRRKKDEPRLRIADVQKWINEDLLKEELAGTRGISRRTVHKWMQKLGFRWSRHHKCVYVDGHNRPDVVTDR 417
            GVAKMEHSRE  KV +VD  TVRRWVK+ CKGGS V+RKRQYNKRE H YIDDEDIR  LREYIDRRLYRRK+DEPRLRIADVQKWIN+DLLKEELAGTRG SRRTVHKWMQKL FRWSRH K V VDGHNRPDVVT R
Sbjct:   81 GVAKMEHSREVAKVYEVDPSTVRRWVKKLCKGGSVVIRKRQYNKREAHPYIDDEDIRNGLREYIDRRLYRRKRDEPRLRIADVQKWINDDLLKEELAGTRGFSRRTVHKWMQKLDFRWSRHRKWVDVDGHNRPDVVTPR 219          
BLAST of mRNA_P-littoralis_Contig1435.7.1 vs. uniprot
Match: A0A6H5K659_9PHAE (Uncharacterized protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K659_9PHAE)

HSP 1 Score: 188 bits (478), Expect = 1.400e-52
Identity = 91/155 (58.71%), Postives = 111/155 (71.61%), Query Frame = 1
Query:    1 GVAKMEHSREAGKVADVDSRTVRRWVKEFCKGGSFVVRKRQYNKREPHSYIDDEDIRGRLREYIDRRLYRRKKDEPRLRIADVQKWINEDLLKEELAGTRGISRRTVHKWMQKLGFRWSRHHKCVYVDGHNRPDVVTDRRSFVELLKRLHQNMSM 465
            GV K+ HSR  GK   V +RTVR WV +FCK G+FVV  R+Y KR+P  YIDDEDIR + REY+D R+YRRKK +PR R+AD Q+W+N   LKEE AG  GI R T H W+ +LGFRW RH KCVYVDGHNRPDVV  RR + E +  + + MS+
Sbjct:   19 GVKKLAHSRAVGKAVGVHARTVRNWVTDFCKDGNFVVPHREYVKRQPFCYIDDEDIREQCREYVDERIYRRKKGQPRFRVADFQRWVNTVCLKEEFAGGGGICRSTAHVWIAQLGFRWRRHGKCVYVDGHNRPDVVQARRLYTEKMFVMRRLMSI 173          
BLAST of mRNA_P-littoralis_Contig1435.7.1 vs. uniprot
Match: A0A6H5K527_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K527_9PHAE)

HSP 1 Score: 187 bits (475), Expect = 4.300e-52
Identity = 90/155 (58.06%), Postives = 111/155 (71.61%), Query Frame = 1
Query:    1 GVAKMEHSREAGKVADVDSRTVRRWVKEFCKGGSFVVRKRQYNKREPHSYIDDEDIRGRLREYIDRRLYRRKKDEPRLRIADVQKWINEDLLKEELAGTRGISRRTVHKWMQKLGFRWSRHHKCVYVDGHNRPDVVTDRRSFVELLKRLHQNMSM 465
            GV K+ HSR  G+   V +RTVR+WV +FCK G FVV  R+Y KR+P  YIDDEDIR + REY+D R+YRRKK +PR R+AD Q+W+N   LKEE AG  GI R T H W+ +LGFRW RH KCVYVDGHNRPDVV  RR + E +  + + MS+
Sbjct:  473 GVKKLAHSRAVGEAVGVHARTVRKWVTDFCKDGKFVVPHREYVKRQPFCYIDDEDIREQCREYVDERIYRRKKGQPRFRVADFQRWVNTVCLKEEFAGGGGICRSTAHVWIAQLGFRWRRHGKCVYVDGHNRPDVVQARRLYTEKMFVMRRLMSI 627          
BLAST of mRNA_P-littoralis_Contig1435.7.1 vs. uniprot
Match: A0A6H5J7G3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J7G3_9PHAE)

HSP 1 Score: 177 bits (448), Expect = 2.500e-49
Identity = 88/155 (56.77%), Postives = 108/155 (69.68%), Query Frame = 1
Query:    1 GVAKMEHSREAGKVADVDSRTVRRWVKEFCKGGSFVVRKRQYNKREPHSYIDDEDIRGRLREYIDRRLYRRKKDEPRLRIADVQKWINEDLLKEELAGTRGISRRTVHKWMQKLGFRWSRHHKCVYVDGHNRPDVVTDRRSFVELLKRLHQNMSM 465
            GV KM HSR  G V    ++TVR+WVKEFC+ G F++RKR Y   +  S+ID EDI  R RE IDRRLYRRKK +PR R++D Q+W+N  LLKE  +G  GISR T H W+ +LGFRW +  KCVYVDGHNRPDVV  RR +V  +  L + MSM
Sbjct:  494 GVNKMRHSRYVGDVVKTTAQTVRKWVKEFCQDGKFLIRKRLYEISQADSFIDHEDIAERCREEIDRRLYRRKKTDPRFRVSDFQRWVNTVLLKEVFSGGGGISRTTAHSWICRLGFRWKKSGKCVYVDGHNRPDVVEARREYVAKMLILRKMMSM 648          
BLAST of mRNA_P-littoralis_Contig1435.7.1 vs. uniprot
Match: A0A6H5L7Z5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7Z5_9PHAE)

HSP 1 Score: 165 bits (418), Expect = 2.910e-49
Identity = 85/155 (54.84%), Postives = 105/155 (67.74%), Query Frame = 1
Query:    1 GVAKMEHSREAGKVADVDSRTVRRWVKEFCKGGSFVVRKRQYNKREPHSYIDDEDIRGRLREYIDRRLYRRKKDEPRLRIADVQKWINEDLLKEELAGTRGISRRTVHKWMQKLGFRWSRHHKCVYVDGHNRPDVVTDRRSFVELLKRLHQNMSM 465
            GV KM HSR  G V    ++TVR+WVKEFC+ G F++ KR Y  R+  S+ID EDI  R RE IDRRLYRRKK +P  R++D Q+W+N  LLKE  +G  GISR T H W+ +LGFRW +  KCVYVDGHNRPDV   R  +V  +  L + MSM
Sbjct:   28 GVNKMRHSRYVGDVVKTTAQTVRKWVKEFCQDGKFLISKRLYEIRQADSFIDPEDIAERCREEIDRRLYRRKKTDPWFRVSDFQRWVNTVLLKEVFSGGGGISRTTAHSWICRLGFRWKKSGKCVYVDGHNRPDVEA-RPEYVAKMLILRKMMSM 181          
BLAST of mRNA_P-littoralis_Contig1435.7.1 vs. uniprot
Match: A0A6H5L796_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L796_9PHAE)

HSP 1 Score: 169 bits (428), Expect = 1.650e-48
Identity = 83/151 (54.97%), Postives = 105/151 (69.54%), Query Frame = 1
Query:   13 MEHSREAGKVADVDSRTVRRWVKEFCKGGSFVVRKRQYNKREPHSYIDDEDIRGRLREYIDRRLYRRKKDEPRLRIADVQKWINEDLLKEELAGTRGISRRTVHKWMQKLGFRWSRHHKCVYVDGHNRPDVVTDRRSFVELLKRLHQNMSM 465
            M HSR  G V    ++TVR+WVKEFC+ G F++RKR Y   +  S+ID EDI  R RE IDRRLYRRKK +PR R++D Q+W+N  LLKE  +G  GISR T H W+ +LGFRW +  KCVYVDGHNRPDVV  R+ +V  +  L + MS+
Sbjct:    1 MRHSRYVGDVVKTTAQTVRKWVKEFCQDGKFLIRKRLYEISQADSFIDHEDIAERCREEIDRRLYRRKKTDPRFRVSDFQRWVNTVLLKEVFSGGGGISRTTAHSWICRLGFRWKKSGKCVYVDGHNRPDVVEARQEYVAKMLILRKMMSI 151          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1435.7.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JJM4_9PHAE8.480e-9698.68Uncharacterized protein n=3 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K550_9PHAE5.330e-8587.10Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JH07_9PHAE2.260e-8289.04Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5KM05_9PHAE1.610e-8082.19Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FZS4_ECTSI1.670e-7684.17Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K659_9PHAE1.400e-5258.71Uncharacterized protein n=3 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K527_9PHAE4.300e-5258.06Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5J7G3_9PHAE2.500e-4956.77Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L7Z5_9PHAE2.910e-4954.84Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L796_9PHAE1.650e-4854.97Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1435contigP-littoralis_Contig1435:12392..13203 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FZS4
Model size468
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons2
Evalue6.32e-75
EggNOG OGs2D50F@1|root,2SWWM@2759|Eukaryota
Cds size456
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789676.0562396-UTR-P-littoralis_Contig1435:12391..124031680789676.0562396-UTR-P-littoralis_Contig1435:12391..12403Pylaiella littoralis U1_48UTRP-littoralis_Contig1435 12392..12403 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789676.067228-CDS-P-littoralis_Contig1435:12403..126451680789676.067228-CDS-P-littoralis_Contig1435:12403..12645Pylaiella littoralis U1_48CDSP-littoralis_Contig1435 12404..12645 +
1680789676.0813942-CDS-P-littoralis_Contig1435:12989..132031680789676.0813942-CDS-P-littoralis_Contig1435:12989..13203Pylaiella littoralis U1_48CDSP-littoralis_Contig1435 12990..13203 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1435.7.1prot_P-littoralis_Contig1435.7.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1435 12404..13203 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1435.7.1

>prot_P-littoralis_Contig1435.7.1 ID=prot_P-littoralis_Contig1435.7.1|Name=mRNA_P-littoralis_Contig1435.7.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=152bp
MEHSREAGKVADVDSRTVRRWVKEFCKGGSFVVRKRQYNKREPHSYIDDE
DIRGRLREYIDRRLYRRKKDEPRLRIADVQKWINEDLLKEELAGTRGISR
RTVHKWMQKLGFRWSRHHKCVYVDGHNRPDVVTDRRSFVELLKRLHQNMS
M*
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mRNA from alignment at P-littoralis_Contig1435:12392..13203+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1435.7.1 ID=mRNA_P-littoralis_Contig1435.7.1|Name=mRNA_P-littoralis_Contig1435.7.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=812bp|location=Sequence derived from alignment at P-littoralis_Contig1435:12392..13203+ (Pylaiella littoralis U1_48)
GGGGTCGCGAAAATGGAGCACAGCAGAGAAGCAGGCAAGGTCGCCGACGT CGACTCGAGAACAGTGAGGCGTTGGGTGAAGGAGTTTTGCAAGGGTGGCT CCTTCGTTGTTCGCAAACGGCAGTACAACAAGCGGGAGCCGCACTCCTAC ATCGACGATGAGGACATCCGCGGTCGCCTGAGGGAGTACATCGACCGGAG GCTGTACCGACGGAAGAAGGACGAGCCACGCCTTCGAATCGCCGACGTGC AAAAGTGAGTGTTTTGGAAATAGAGGAAACGAAGGTATGTCGTTCGTTGG TGGAGGTAGAAACCCGTGCGCAAAATTGTGTGGGCACGCTGCTTTTGTAT TCGTGAGTTTTTTTTTTTGAGGTGACCCTCTGCCAGCTTTAGACACCCTG TCTTCGGAATGGAATTTATTGCTTGCGGGATATCTGCTCAGTTGGCCAGC AAACCGCCCCCCTTACATCAGTTTTTCGTTGTGAACACTTTGTCTCATGT ACTGCGAAGAACCCCTCCCTACCCACCCACGTCGGTTCCCACTGTTTTCG TTGTCTTCGTTGCATACACTCCTCTGCCACGACGTTACTTTGAAACAGGT GGATCAATGAAGATCTACTGAAAGAGGAGCTTGCCGGTACGAGAGGAATT TCTCGGAGGACGGTGCACAAGTGGATGCAAAAGCTCGGCTTTCGATGGTC GAGGCACCACAAGTGCGTGTACGTGGACGGCCACAACAGACCGGACGTCG TCACCGACCGTCGGAGCTTTGTGGAGTTGCTGAAGCGCCTGCACCAGAAC ATGTCCATGTGA
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Coding sequence (CDS) from alignment at P-littoralis_Contig1435:12392..13203+

>mRNA_P-littoralis_Contig1435.7.1 ID=mRNA_P-littoralis_Contig1435.7.1|Name=mRNA_P-littoralis_Contig1435.7.1|organism=Pylaiella littoralis U1_48|type=CDS|length=456bp|location=Sequence derived from alignment at P-littoralis_Contig1435:12392..13203+ (Pylaiella littoralis U1_48)
ATGGAGCACAGCAGAGAAGCAGGCAAGGTCGCCGACGTCGACTCGAGAAC
AGTGAGGCGTTGGGTGAAGGAGTTTTGCAAGGGTGGCTCCTTCGTTGTTC
GCAAACGGCAGTACAACAAGCGGGAGCCGCACTCCTACATCGACGATGAG
GACATCCGCGGTCGCCTGAGGGAGTACATCGACCGGAGGCTGTACCGACG
GAAGAAGGACGAGCCACGCCTTCGAATCGCCGACGTGCAAAAGTGGATCA
ATGAAGATCTACTGAAAGAGGAGCTTGCCGGTACGAGAGGAATTTCTCGG
AGGACGGTGCACAAGTGGATGCAAAAGCTCGGCTTTCGATGGTCGAGGCA
CCACAAGTGCGTGTACGTGGACGGCCACAACAGACCGGACGTCGTCACCG
ACCGTCGGAGCTTTGTGGAGTTGCTGAAGCGCCTGCACCAGAACATGTCC
ATGTGA
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