mRNA_P-littoralis_Contig1431.3.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1431.3.1
Unique NamemRNA_P-littoralis_Contig1431.3.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1431.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1431contigP-littoralis_Contig1431:8767..9331 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size565
Hectar predicted targeting categoryother localisation
Exons1
Cds size357
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789675.8833017-UTR-P-littoralis_Contig1431:8766..89741680789675.8833017-UTR-P-littoralis_Contig1431:8766..8974Pylaiella littoralis U1_48UTRP-littoralis_Contig1431 8767..8974 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789675.8973215-CDS-P-littoralis_Contig1431:8974..93311680789675.8973215-CDS-P-littoralis_Contig1431:8974..9331Pylaiella littoralis U1_48CDSP-littoralis_Contig1431 8975..9331 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1431.3.1prot_P-littoralis_Contig1431.3.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1431 8975..9331 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1431.3.1

>prot_P-littoralis_Contig1431.3.1 ID=prot_P-littoralis_Contig1431.3.1|Name=mRNA_P-littoralis_Contig1431.3.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=119bp
MPVCGAWCLPQTACRVQRGPPEWLPLRRHEMHKRHEPGGERSAQLHFRDA
AALKSRTHVACPAPAESCGAGTSCLAQDGTSKLSRKCPHGWARHFLCMRV
PCPEGCGDVHGAAAQGNC*
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mRNA from alignment at P-littoralis_Contig1431:8767..9331+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1431.3.1 ID=mRNA_P-littoralis_Contig1431.3.1|Name=mRNA_P-littoralis_Contig1431.3.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=565bp|location=Sequence derived from alignment at P-littoralis_Contig1431:8767..9331+ (Pylaiella littoralis U1_48)
TTCTCCGTTCGAGCCACAACTAGTTTCTAGTGTCTTCCGAGGGCGGCGGT
CAGTTTCTTTCAGTTTCATTGATCTCCCATGAATGCCGAAGGTTCAGTGC
TCTGCACCCAGCTGCTGCGGCGGTCAGAGATGATCGTTGCGAAATTTTGG
GAGGAACGTGCCTCCTCCCGGGACCGGCCCCGATGCAGCGCGGCCGCACC
TGCCCGCGATGCCGGTGTGCGGTGCATGGTGTCTGCCACAGACTGCTTGT
AGGGTCCAACGAGGACCCCCCGAATGGCTTCCTTTGCGGAGGCATGAAAT
GCATAAACGACATGAGCCTGGAGGAGAGCGGAGCGCTCAGCTGCATTTTC
GGGACGCCGCTGCCCTGAAGTCGAGAACACATGTTGCCTGCCCAGCCCCG
GCCGAAAGCTGTGGTGCCGGGACAAGCTGTCTTGCCCAGGATGGGACGTC
TAAACTTAGCAGGAAGTGTCCCCATGGATGGGCGAGGCACTTCTTGTGCA
TGCGGGTTCCCTGTCCCGAGGGCTGTGGTGACGTGCATGGAGCCGCAGCA
CAAGGTAATTGTTGA
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Coding sequence (CDS) from alignment at P-littoralis_Contig1431:8767..9331+

>mRNA_P-littoralis_Contig1431.3.1 ID=mRNA_P-littoralis_Contig1431.3.1|Name=mRNA_P-littoralis_Contig1431.3.1|organism=Pylaiella littoralis U1_48|type=CDS|length=357bp|location=Sequence derived from alignment at P-littoralis_Contig1431:8767..9331+ (Pylaiella littoralis U1_48)
ATGCCGGTGTGCGGTGCATGGTGTCTGCCACAGACTGCTTGTAGGGTCCA
ACGAGGACCCCCCGAATGGCTTCCTTTGCGGAGGCATGAAATGCATAAAC
GACATGAGCCTGGAGGAGAGCGGAGCGCTCAGCTGCATTTTCGGGACGCC
GCTGCCCTGAAGTCGAGAACACATGTTGCCTGCCCAGCCCCGGCCGAAAG
CTGTGGTGCCGGGACAAGCTGTCTTGCCCAGGATGGGACGTCTAAACTTA
GCAGGAAGTGTCCCCATGGATGGGCGAGGCACTTCTTGTGCATGCGGGTT
CCCTGTCCCGAGGGCTGTGGTGACGTGCATGGAGCCGCAGCACAAGGTAA
TTGTTGA
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