mRNA_P-littoralis_Contig1431.2.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1431.2.1
Unique NamemRNA_P-littoralis_Contig1431.2.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
[Close]
BLAST of mRNA_P-littoralis_Contig1431.2.1 vs. uniprot
Match: A0A6H5JAU4_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAU4_9PHAE)

HSP 1 Score: 149 bits (377), Expect = 2.670e-41
Identity = 66/82 (80.49%), Postives = 75/82 (91.46%), Query Frame = 1 
Query:    4 FCRHFAREMYHEHIYLPTGDYQTKVMSEYERLGFTGAIGSTDVTHLAWGCCPYNQARSFTGKEGYPTIAYQVTVDHTKRALA 249
            F R+FAREMY EHI+LPTGDYQ KVM++Y+RLGF+GA GSTDVTH+ WG CPYNQARS+TGKEGYPT+AYQVTVDHTKR LA
Sbjct:  193 FTRYFAREMYAEHIFLPTGDYQKKVMTQYDRLGFSGATGSTDVTHIPWGMCPYNQARSYTGKEGYPTVAYQVTVDHTKRVLA 274
[Close]
BLAST of mRNA_P-littoralis_Contig1431.2.1 vs. uniprot
Match: A0A6H5K6N4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6N4_9PHAE)

HSP 1 Score: 134 bits (336), Expect = 5.520e-38
Identity = 57/82 (69.51%), Postives = 69/82 (84.15%), Query Frame = 1 
Query:    4 FCRHFAREMYHEHIYLPTGDYQTKVMSEYERLGFTGAIGSTDVTHLAWGCCPYNQARSFTGKEGYPTIAYQVTVDHTKRALA 249
            FC+HFA+E++ EHIYLPTG YQ +VM  Y++LG TGAIGSTDVTH+ WG CP+   RS+TGKEG+PTIAYQVTVDH  RA+A
Sbjct:   38 FCKHFAQELFEEHIYLPTGSYQDEVMCMYDKLGMTGAIGSTDVTHIGWGMCPFTLGRSYTGKEGFPTIAYQVTVDHAGRAIA 119
[Close]
BLAST of mRNA_P-littoralis_Contig1431.2.1 vs. uniprot
Match: A0A6H5KH50_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KH50_9PHAE)

HSP 1 Score: 134 bits (336), Expect = 5.750e-37
Identity = 57/82 (69.51%), Postives = 69/82 (84.15%), Query Frame = 1 
Query:    4 FCRHFAREMYHEHIYLPTGDYQTKVMSEYERLGFTGAIGSTDVTHLAWGCCPYNQARSFTGKEGYPTIAYQVTVDHTKRALA 249
            FC+HFA+E++ EHIYLPTG YQ +VM  Y++LG TGAIGSTDVTH+ WG CP+   RS+TGKEG+PTIAYQVTVDH  RA+A
Sbjct:   38 FCKHFAQELFEEHIYLPTGSYQDEVMCMYDKLGMTGAIGSTDVTHIGWGMCPFTLGRSYTGKEGFPTIAYQVTVDHAGRAIA 119
[Close]
BLAST of mRNA_P-littoralis_Contig1431.2.1 vs. uniprot
Match: A0A6H5JCU6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCU6_9PHAE)

HSP 1 Score: 134 bits (336), Expect = 1.560e-35
Identity = 57/82 (69.51%), Postives = 69/82 (84.15%), Query Frame = 1 
Query:    4 FCRHFAREMYHEHIYLPTGDYQTKVMSEYERLGFTGAIGSTDVTHLAWGCCPYNQARSFTGKEGYPTIAYQVTVDHTKRALA 249
            FC+HFA+E++ EHIYLPTG YQ +VM  Y++LG TGAIGSTDVTH+ WG CP+   RS+TGKEG+PTIAYQVTVDH  RA+A
Sbjct:  285 FCKHFAQELFEEHIYLPTGSYQDEVMCMYDKLGMTGAIGSTDVTHIGWGMCPFTLGRSYTGKEGFPTIAYQVTVDHAGRAIA 366
[Close]
BLAST of mRNA_P-littoralis_Contig1431.2.1 vs. uniprot
Match: A0A6H5KNX4_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNX4_9PHAE)

HSP 1 Score: 129 bits (323), Expect = 1.000e-33
Identity = 60/84 (71.43%), Postives = 69/84 (82.14%), Query Frame = 1 
Query:    4 FCRHFAREMYHEHIYLPTGDYQT--KVMSEYERLGFTGAIGSTDVTHLAWGCCPYNQARSFTGKEGYPTIAYQVTVDHTKRALA 249
            FCRHFAREMY E I+LPT +      VM +Y+RLGFTGA+GS DVTH+AW  CPYNQARS+TGKEG+PTIAYQVTVDH  RA+A
Sbjct:  120 FCRHFAREMYDEQIHLPTEESGKLDHVMKQYDRLGFTGAVGSMDVTHIAWSRCPYNQARSYTGKEGFPTIAYQVTVDHAGRAIA 203
[Close]
BLAST of mRNA_P-littoralis_Contig1431.2.1 vs. uniprot
Match: A0A6H5KY50_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KY50_9PHAE)

HSP 1 Score: 127 bits (320), Expect = 1.720e-33
Identity = 54/82 (65.85%), Postives = 69/82 (84.15%), Query Frame = 1 
Query:    4 FCRHFAREMYHEHIYLPTGDYQTKVMSEYERLGFTGAIGSTDVTHLAWGCCPYNQARSFTGKEGYPTIAYQVTVDHTKRALA 249
            FC++FA E+Y E++YLPTG+   KVM +Y+R+GF GA+GSTDVTH+ WG CPYNQAR +TGKEG PT+A+QVTVDH+ R LA
Sbjct:  118 FCKYFAAELYDEYVYLPTGEDLRKVMEQYDRIGFPGAVGSTDVTHIYWGMCPYNQARIYTGKEGKPTVAFQVTVDHSGRVLA 199
[Close]
BLAST of mRNA_P-littoralis_Contig1431.2.1 vs. uniprot
Match: A0A6H5JPH7_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPH7_9PHAE)

HSP 1 Score: 127 bits (320), Expect = 5.480e-33
Identity = 54/82 (65.85%), Postives = 69/82 (84.15%), Query Frame = 1 
Query:    4 FCRHFAREMYHEHIYLPTGDYQTKVMSEYERLGFTGAIGSTDVTHLAWGCCPYNQARSFTGKEGYPTIAYQVTVDHTKRALA 249
            FC++FA E+Y E++YLPTG+   KVM +Y+R+GF GA+GSTDVTH+ WG CPYNQAR +TGKEG PT+A+QVTVDH+ R LA
Sbjct:  209 FCKYFAAELYDEYVYLPTGEDLRKVMEQYDRIGFPGAVGSTDVTHIYWGMCPYNQARIYTGKEGKPTVAFQVTVDHSGRVLA 290
[Close]
BLAST of mRNA_P-littoralis_Contig1431.2.1 vs. uniprot
Match: A0A6H5K796_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K796_9PHAE)

HSP 1 Score: 122 bits (307), Expect = 7.490e-32
Identity = 55/82 (67.07%), Postives = 63/82 (76.83%), Query Frame = 1 
Query:    4 FCRHFAREMYHEHIYLPTGDYQTKVMSEYERLGFTGAIGSTDVTHLAWGCCPYNQARSFTGKEGYPTIAYQVTVDHTKRALA 249
            FCRHFA EM+ EHIYLPTG Y  +VM  + +LG+TGA GSTDVTH+ W  CP+   RSFTGKEG+PTIAY VTVDH  R LA
Sbjct:   71 FCRHFAAEMFDEHIYLPTGTYLDEVMGIFHQLGWTGACGSTDVTHIGWNMCPFTLGRSFTGKEGFPTIAYDVTVDHDGRDLA 152
[Close]
BLAST of mRNA_P-littoralis_Contig1431.2.1 vs. uniprot
Match: A0A6H5JIW4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIW4_9PHAE)

HSP 1 Score: 117 bits (292), Expect = 1.570e-30
Identity = 53/82 (64.63%), Postives = 61/82 (74.39%), Query Frame = 1 
Query:    4 FCRHFAREMYHEHIYLPTGDYQTKVMSEYERLGFTGAIGSTDVTHLAWGCCPYNQARSFTGKEGYPTIAYQVTVDHTKRALA 249
            F RHFA EM+ EHIYLPTG Y  +VM  + +LG TGA GSTDVTH+ W  CP+   R FTGKEG+PTIAY+VTVDH  R LA
Sbjct:   32 FRRHFAAEMFDEHIYLPTGTYLDEVMGIFHQLGCTGACGSTDVTHIGWNMCPFTLGRPFTGKEGFPTIAYEVTVDHAGRTLA 113
[Close]
BLAST of mRNA_P-littoralis_Contig1431.2.1 vs. uniprot
Match: A0A6H5L642_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L642_9PHAE)

HSP 1 Score: 116 bits (290), Expect = 1.980e-30
Identity = 54/83 (65.06%), Postives = 65/83 (78.31%), Query Frame = 1 
Query:    4 FCRHFAREMYHEHIYLPT---GDYQTKVMSEYERLGFTGAIGSTDVTHLAWGCCPYNQARSFTGKEGYPTIAYQVTVDHTKRA 243
            FC+HFAREMY EHIYLP+   G+    VM +Y+RLGF+GA+GS DVTH+ W  CPYN ARS+TGKEG PT+ YQVTV+H  RA
Sbjct:  160 FCKHFAREMYDEHIYLPSEQNGELD-HVMKQYDRLGFSGAMGSMDVTHIGWSKCPYNLARSYTGKEGVPTVGYQVTVNHAGRA 241
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1431.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JAU4_9PHAE2.670e-4180.49Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K6N4_9PHAE5.520e-3869.51Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KH50_9PHAE5.750e-3769.51Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JCU6_9PHAE1.560e-3569.51Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KNX4_9PHAE1.000e-3371.43DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5KY50_9PHAE1.720e-3365.85Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JPH7_9PHAE5.480e-3365.85Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K796_9PHAE7.490e-3267.07Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JIW4_9PHAE1.570e-3064.63Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L642_9PHAE1.980e-3065.06Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1431contigP-littoralis_Contig1431:2310..2558 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D7FSK2
PFAMsPlant_tran
Model size251
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons1
Evalue3.1e-28
EggNOG OGs2E2RF@1|root,2S9YA@2759|Eukaryota
DescriptionPlant transposon protein
Cds size222
COG categoryS
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789675.8411956-UTR-P-littoralis_Contig1431:2309..23361680789675.8411956-UTR-P-littoralis_Contig1431:2309..2336Pylaiella littoralis U1_48UTRP-littoralis_Contig1431 2310..2336 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789675.8545444-CDS-P-littoralis_Contig1431:2336..25581680789675.8545444-CDS-P-littoralis_Contig1431:2336..2558Pylaiella littoralis U1_48CDSP-littoralis_Contig1431 2337..2558 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1431.2.1prot_P-littoralis_Contig1431.2.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1431 2337..2558 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1431.2.1

>prot_P-littoralis_Contig1431.2.1 ID=prot_P-littoralis_Contig1431.2.1|Name=mRNA_P-littoralis_Contig1431.2.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=74bp
MYHEHIYLPTGDYQTKVMSEYERLGFTGAIGSTDVTHLAWGCCPYNQARS
FTGKEGYPTIAYQVTVDHTKRALA
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mRNA from alignment at P-littoralis_Contig1431:2310..2558+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1431.2.1 ID=mRNA_P-littoralis_Contig1431.2.1|Name=mRNA_P-littoralis_Contig1431.2.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=249bp|location=Sequence derived from alignment at P-littoralis_Contig1431:2310..2558+ (Pylaiella littoralis U1_48)
AGCTTCTGCAGGCACTTCGCCAGAGAGATGTACCACGAACACATCTATCT
ACCGACAGGAGATTATCAGACGAAGGTCATGAGCGAGTACGAGCGCCTTG
GCTTCACAGGCGCGATCGGGTCTACGGATGTCACCCACCTCGCGTGGGGC
TGTTGCCCCTACAACCAAGCCCGTTCTTTCACAGGAAAAGAAGGGTATCC
TACCATCGCATATCAAGTGACCGTCGATCACACTAAACGCGCGTTGGCA
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Coding sequence (CDS) from alignment at P-littoralis_Contig1431:2310..2558+

>mRNA_P-littoralis_Contig1431.2.1 ID=mRNA_P-littoralis_Contig1431.2.1|Name=mRNA_P-littoralis_Contig1431.2.1|organism=Pylaiella littoralis U1_48|type=CDS|length=222bp|location=Sequence derived from alignment at P-littoralis_Contig1431:2310..2558+ (Pylaiella littoralis U1_48)
ATGTACCACGAACACATCTATCTACCGACAGGAGATTATCAGACGAAGGT
CATGAGCGAGTACGAGCGCCTTGGCTTCACAGGCGCGATCGGGTCTACGG
ATGTCACCCACCTCGCGTGGGGCTGTTGCCCCTACAACCAAGCCCGTTCT
TTCACAGGAAAAGAAGGGTATCCTACCATCGCATATCAAGTGACCGTCGA
TCACACTAAACGCGCGTTGGCA
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