mRNA_P-littoralis_Contig1430.3.2 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1430.3.2
Unique NamemRNA_P-littoralis_Contig1430.3.2
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig1430.3.2 vs. uniprot
Match: A0A6H5JR14_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JR14_9PHAE)

HSP 1 Score: 50.1 bits (118), Expect = 1.330e-5
Identity = 22/29 (75.86%), Postives = 27/29 (93.10%), Query Frame = 1 
Query:    1 MGESPDLELECYAALASRVDAFIDIFNGK 87
            MG+  DLEL+CYAALA+++DAFIDIFNGK
Sbjct:  500 MGKPLDLELDCYAALAAKMDAFIDIFNGK 528
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1430.3.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JR14_9PHAE1.330e-575.86Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1430contigP-littoralis_Contig1430:14918..15924 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size170
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Cds size168
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789675.6380458-CDS-P-littoralis_Contig1430:14917..149991680789675.6380458-CDS-P-littoralis_Contig1430:14917..14999Pylaiella littoralis U1_48CDSP-littoralis_Contig1430 14918..14999 -
1680789675.6476812-CDS-P-littoralis_Contig1430:15838..159241680789675.6476812-CDS-P-littoralis_Contig1430:15838..15924Pylaiella littoralis U1_48CDSP-littoralis_Contig1430 15839..15924 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1430.3.2prot_P-littoralis_Contig1430.3.2Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1430 14918..15924 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1430.3.2

>prot_P-littoralis_Contig1430.3.2 ID=prot_P-littoralis_Contig1430.3.2|Name=mRNA_P-littoralis_Contig1430.3.2|organism=Pylaiella littoralis U1_48|type=polypeptide|length=56bp
MGESPDLELECYAALASRVDAFIDIFNGKKLRPLGVRAQERPRQESGLHY
IGRRLQ
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mRNA from alignment at P-littoralis_Contig1430:14918..15924-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1430.3.2 ID=mRNA_P-littoralis_Contig1430.3.2|Name=mRNA_P-littoralis_Contig1430.3.2|organism=Pylaiella littoralis U1_48|type=mRNA|length=1007bp|location=Sequence derived from alignment at P-littoralis_Contig1430:14918..15924- (Pylaiella littoralis U1_48)
ATGGGAGAATCACCCGACCTGGAGTTGGAGTGCTACGCAGCACTAGCGTC
GAGGGTGGATGCCTTCATCGACATCTTCAACGGCAAGTGAACGGTGTTCG
TATTGTCGCAGTATGTGGAGGGGCCTGTCGCGTGACTATGTTCCGTGCTC
TCCTTTTTCCCTGAAGTTTCCCGGCACCCGGGTACACTCTTTCTCCATAC
AGGGGTGGTTGCTCCGGAAGTCCGGAAATACCGGCAAACGCGCCTGTCTC
CCGGCGCAGCTCGTGACGGAGATTTTTTTGTTTTTTTAGCTTGATTGTAA
AAACCCGCCACACTTGTGTTCTAACGGGATTGAACGGATATCGTAATTTG
CCAATAAAATCAATTATTATCGTTTTCAAATAAGTCTGTTAAACAGAGAT
GTCGCACCAAAACAGCACATCGAAGACCAATATACTGTTTTATTCGAGAC
AACTATTCTTTCGATTTCAAAATAGAGTGCGGCAAACTATTCCTCTCATC
ATTGCCGCGAACTGTTTGTGGCGTTGTTGGTGTTGGTGCATGGGGTGGTG
TTTGTGTCGTTTTTGTGTGATAAAACGTGCTGTGTAATGGCTGCAACGGA
TATATTTCGTGACATATTATGCGGATGCCGGGGTGCGGAGTGCAGGATGG
GGGCTCAGTGGTGACTTTTGGGGCCCCGTGGAACGTTCTCGCAACAAATG
ATGCAATTAGCCAAAAACATAAATAACTCTGCAGCTATGTATCGACATAT
CTCGTATCGGCGATCACTAGTATTGTTTCACGTCCCAACGCGATTGAACA
AAAAGGAGAGCACGGACCTACTTGTTTTTTTTTTATACATATTTCCTCGC
GCAATGTACACACTCTGTGCGCGTCGTTTGTCTCTTCCCACACGGCCCCA
TGTATGTGTATGTGTATATATTCAGGAAACTTCGGCCGCTCGGAGTACGC
GCGCAAGAAAGGCCTCGACAAGAAAGCGGGCTACATTACATCGGCCGACG
ACTCCAA
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Coding sequence (CDS) from alignment at P-littoralis_Contig1430:14918..15924-

>mRNA_P-littoralis_Contig1430.3.2 ID=mRNA_P-littoralis_Contig1430.3.2|Name=mRNA_P-littoralis_Contig1430.3.2|organism=Pylaiella littoralis U1_48|type=CDS|length=168bp|location=Sequence derived from alignment at P-littoralis_Contig1430:14918..15924- (Pylaiella littoralis U1_48)
ATGGGAGAATCACCCGACCTGGAGTTGGAGTGCTACGCAGCACTAGCGTC
GAGGGTGGATGCCTTCATCGACATCTTCAACGGCAAGAAACTTCGGCCGC
TCGGAGTACGCGCGCAAGAAAGGCCTCGACAAGAAAGCGGGCTACATTAC
ATCGGCCGACGACTCCAA
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