mRNA_P-littoralis_Contig143.69.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig143.69.1
Unique NamemRNA_P-littoralis_Contig143.69.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig143.69.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig143contigP-littoralis_Contig143:245699..245857 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size160
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Cds size156
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789673.2417772-UTR-P-littoralis_Contig143:245698..2457011680789673.2417772-UTR-P-littoralis_Contig143:245698..245701Pylaiella littoralis U1_48UTRP-littoralis_Contig143 245699..245701 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789673.252794-CDS-P-littoralis_Contig143:245701..2458571680789673.252794-CDS-P-littoralis_Contig143:245701..245857Pylaiella littoralis U1_48CDSP-littoralis_Contig143 245702..245857 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig143.69.1prot_P-littoralis_Contig143.69.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig143 245702..245857 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig143.69.1

>prot_P-littoralis_Contig143.69.1 ID=prot_P-littoralis_Contig143.69.1|Name=mRNA_P-littoralis_Contig143.69.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=52bp
MAKLLSEMPTFSGGMPSQDEPEKMEKFQKRFNAWYYRFLKRHRFSIRRKT
SV
back to top

mRNA from alignment at P-littoralis_Contig143:245699..245857+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig143.69.1 ID=mRNA_P-littoralis_Contig143.69.1|Name=mRNA_P-littoralis_Contig143.69.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=159bp|location=Sequence derived from alignment at P-littoralis_Contig143:245699..245857+ (Pylaiella littoralis U1_48)
GTCATGGCCAAGCTTCTCTCCGAGATGCCAACCTTTTCAGGGGGCATGCC
GTCCCAAGACGAGCCGGAGAAGATGGAAAAATTTCAGAAGCGTTTCAACG
CCTGGTACTACAGGTTCCTCAAGAGGCACCGGTTCTCGATCCGACGCAAG
ACGAGCGTG
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig143:245699..245857+

>mRNA_P-littoralis_Contig143.69.1 ID=mRNA_P-littoralis_Contig143.69.1|Name=mRNA_P-littoralis_Contig143.69.1|organism=Pylaiella littoralis U1_48|type=CDS|length=156bp|location=Sequence derived from alignment at P-littoralis_Contig143:245699..245857+ (Pylaiella littoralis U1_48)
ATGGCCAAGCTTCTCTCCGAGATGCCAACCTTTTCAGGGGGCATGCCGTC
CCAAGACGAGCCGGAGAAGATGGAAAAATTTCAGAAGCGTTTCAACGCCT
GGTACTACAGGTTCCTCAAGAGGCACCGGTTCTCGATCCGACGCAAGACG
AGCGTG
back to top