mRNA_P-littoralis_Contig143.45.3 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig143.45.3
Unique NamemRNA_P-littoralis_Contig143.45.3
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig143.45.3 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig143contigP-littoralis_Contig143:219031..221187 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size596
Hectar predicted targeting categoryother localisation
Exons2
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-20_004050.1
Cds size594
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789672.4798534-CDS-P-littoralis_Contig143:219030..2194291680789672.4798534-CDS-P-littoralis_Contig143:219030..219429Pylaiella littoralis U1_48CDSP-littoralis_Contig143 219031..219429 -
1680789672.4972556-CDS-P-littoralis_Contig143:220991..2211861680789672.4972556-CDS-P-littoralis_Contig143:220991..221186Pylaiella littoralis U1_48CDSP-littoralis_Contig143 220992..221186 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789672.5198925-UTR-P-littoralis_Contig143:221186..2211871680789672.5198925-UTR-P-littoralis_Contig143:221186..221187Pylaiella littoralis U1_48UTRP-littoralis_Contig143 221187..221187 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig143.45.3prot_P-littoralis_Contig143.45.3Pylaiella littoralis U1_48polypeptideP-littoralis_Contig143 219031..221186 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig143.45.3

>prot_P-littoralis_Contig143.45.3 ID=prot_P-littoralis_Contig143.45.3|Name=mRNA_P-littoralis_Contig143.45.3|organism=Pylaiella littoralis U1_48|type=polypeptide|length=198bp
MIKAPFSGLTMAATAVPTLSYVPFDVARKHPFMDMRGTPRARARCEECTK
DIATAANSMDQSDLVFVTSHEKQLLGSLVGRQENRDGADMMKTILRDPTS
AAAGTAARWLVTMHKARELVRFAIVLVEHRRAMTLREGDIEGALYWLELR
ATSTPYADDLLFGDLEGEEVDRESGNGETVRDVEQHERRDNQEGEEEE
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mRNA from alignment at P-littoralis_Contig143:219031..221187-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig143.45.3 ID=mRNA_P-littoralis_Contig143.45.3|Name=mRNA_P-littoralis_Contig143.45.3|organism=Pylaiella littoralis U1_48|type=mRNA|length=2157bp|location=Sequence derived from alignment at P-littoralis_Contig143:219031..221187- (Pylaiella littoralis U1_48)
CATGATCAAAGCTCCTTTTTCAGGCCTGACAATGGCAGCCACTGCTGTTC
CCACCCTAAGCTACGTCCCTTTCGACGTTGCTCGAAAGCATCCCTTTATG
GATATGAGAGGTACGCCTAGGGCGCGCGCGCGGTGCGAGGAATGCACGAA
GGACATTGCCACAGCGGCAAACAGCATGGATCAATCTGATCTCGTGGTAA
GTGAGAAACATCACAGCAGCGACTCCAAACTACTGCTGTGTGCTGCAGCT
TCCTATTCGTGACACCGTCGAAGACACGCACACAGCTCCTTATTTTCCTG
TTTGATACCGGTATCCATAGGCAAGTGTCTGAAAGACCCTTCACCTTGCA
TATTTGATACGAAGTACTGCTCCATACAATATCCCCAAACAGAACGGACC
CACATTTCTTGCTTTGGAGCATTGGTTCAGATTTTGAATTCTCCAACCGA
ATCAAGTTTCGAAATTTCAAAATTTCAAAATTTCACGTTTCGAAGACCTA
CTACTGTATCATCCGTACTTCGAAGTACAAAAGCTTTGTTCCACAAGTAG
TCTTTTTCTTGACAAAACTGCTGTCTTGTCGTTGATTCGCCTGTGAGTCT
ACCCTCTACCCTCTTCTTTGTTTCTTGTCTCGTCTCTTTTGGTTTTCTTA
CAAAGCCATCAATGTGTTCGCCTCTCTCAAGACGAGGAGAAAAAGTAGAT
TACCGGTACGATGGCAACGAGCACAGAGAGCACAACCTGTACATCCATCT
ACTCGTGTTCCTACTTTCATCATAATCTACTGCCGTTGCAACTCCCCTGA
GGTTATCGGGCTCAACAAGACAGTTTTTGTTGAGGACATTCATAGATCAA
GGCTACACCCGACTACACAGTCAGCGCTGACTGTTATGGTTCAATGGACG
AGTCCCATTAACCTAACAAGGGAAAGGTCGGGGGTGCGAATCCCAGCACA
TGTATGTGATATCCACCCGACTACAAAGTCAGCGCTCACTGTTAGGGTTC
AATGGATTAGTCCCATTAACCTAACAGCATGTGCATGATGTGTAACTCCA
CAACGCCACGCCGTCGTACCATTGACATCGTGCTGCTATAAGTATGTAGA
CTTAAGAACGAAGTACTGAGCACGTCTATTGTATTTACAGACGACGCGCG
CACACACACACGCCTCTCGTGTGCCACACGCAGTCTTTTTACGTGCGCTC
TGCCGAAATATGCCAATGTTCAATGTTCAATGTTTGCAATGTTCGTGTTT
CATTTGGCTATGAATACCTTCAATGATACAAGTAGTTGCTTGGAGTTCTT
CACCCAGTCCAAGGTGAAACGGTTAATGTGGAGTGTGTGACAGGAAAGCA
GGTAGTTTCCAGCCTCCACTGGTTGAGTTCCCTGTAAGTCCTTTATTACT
CCGAGTATTTCAGTACACACAGAAGCAAGCGAGCGACGCTAAGTTCTGAA
CTTTGGCCTCACATCAAAGGCGACAAGTTCGGATCTCCTGCGGTACACAG
CAGTACACATGCAGCACGAAGAGCTCAGTTTGTTCCTGTGCGAGCAGCAG
CAGCAGCAGGCGTTCGTTGCGGAACGCGAGACGATAATAGCAATTTACGA
TACAGACGTAGACATTATGTTCTCTGGCGAGGCTTGCGACTGACTGTGTT
CCTCTCACAGGCCGCACGTGAAGAAGCCACCGAGACACCCAACGATGACC
TAGATACAAGCCTAGTATTTCTGTTGCCGGTGATTTGGTTCGGGTCTCCC
CGCAGAAGTTCGTGACCTCCCACGAGAAGCAGCTCCTCGGCTCCCTGGTT
GGGCGGCAGGAAAACAGAGACGGTGCCGACATGATGAAAACCATCCTCCG
GGACCCCACAAGCGCGGCGGCGGGAACTGCCGCGAGGTGGCTGGTGACCA
TGCACAAGGCCCGAGAGCTCGTGCGCTTCGCCATCGTGCTGGTGGAGCAC
AGGCGCGCCATGACGCTGAGGGAGGGGGACATCGAGGGCGCGCTGTATTG
GTTGGAGCTGAGGGCGACCTCCACGCCGTACGCCGACGACCTGCTCTTCG
GCGACTTGGAGGGGGAGGAAGTGGATCGGGAGTCCGGCAACGGAGAGACG
GTGCGAGACGTGGAGCAACACGAAAGGAGGGACAATCAGGAGGGAGAAGA
GGAGGAG
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Coding sequence (CDS) from alignment at P-littoralis_Contig143:219031..221187-

>mRNA_P-littoralis_Contig143.45.3 ID=mRNA_P-littoralis_Contig143.45.3|Name=mRNA_P-littoralis_Contig143.45.3|organism=Pylaiella littoralis U1_48|type=CDS|length=594bp|location=Sequence derived from alignment at P-littoralis_Contig143:219031..221187- (Pylaiella littoralis U1_48)
ATGATCAAAGCTCCTTTTTCAGGCCTGACAATGGCAGCCACTGCTGTTCC
CACCCTAAGCTACGTCCCTTTCGACGTTGCTCGAAAGCATCCCTTTATGG
ATATGAGAGGTACGCCTAGGGCGCGCGCGCGGTGCGAGGAATGCACGAAG
GACATTGCCACAGCGGCAAACAGCATGGATCAATCTGATCTCGTGTTCGT
GACCTCCCACGAGAAGCAGCTCCTCGGCTCCCTGGTTGGGCGGCAGGAAA
ACAGAGACGGTGCCGACATGATGAAAACCATCCTCCGGGACCCCACAAGC
GCGGCGGCGGGAACTGCCGCGAGGTGGCTGGTGACCATGCACAAGGCCCG
AGAGCTCGTGCGCTTCGCCATCGTGCTGGTGGAGCACAGGCGCGCCATGA
CGCTGAGGGAGGGGGACATCGAGGGCGCGCTGTATTGGTTGGAGCTGAGG
GCGACCTCCACGCCGTACGCCGACGACCTGCTCTTCGGCGACTTGGAGGG
GGAGGAAGTGGATCGGGAGTCCGGCAACGGAGAGACGGTGCGAGACGTGG
AGCAACACGAAAGGAGGGACAATCAGGAGGGAGAAGAGGAGGAG
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