mRNA_P-littoralis_Contig143.45.2 (mRNA) Pylaiella littoralis U1_48
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Overview
Homology
BLAST of mRNA_P-littoralis_Contig143.45.2 vs. uniprot
Match: D8LC11_ECTSI (COX assembly mitochondrial protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LC11_ECTSI) HSP 1 Score: 177 bits (449), Expect = 4.560e-51 Identity = 86/99 (86.87%), Postives = 95/99 (95.96%), Query Frame = 1
Query: 22 MATVKDGGRNDRLSWSKRAEHRLREELKEIALKRCDDSVAKFAACAREKGMMVVFSCREQNAMMNACLNQHTNADSFEQYKFEREVELHREAQAKESSS 318
MAT+KDGGRNDRLSWSKRAEHRLREELKEIALKRCDDSVAKFAACAREKGM+VVFSCREQNA+MN+CLNQHTN +SF++YKFERE+ELHRE QA +S S
Sbjct: 1 MATLKDGGRNDRLSWSKRAEHRLREELKEIALKRCDDSVAKFAACAREKGMLVVFSCREQNALMNSCLNQHTNEESFDRYKFEREIELHRETQAAKSPS 99
BLAST of mRNA_P-littoralis_Contig143.45.2 vs. uniprot
Match: A0A8K1C5Z8_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1C5Z8_PYTOL) HSP 1 Score: 103 bits (257), Expect = 2.880e-23 Identity = 48/86 (55.81%), Postives = 64/86 (74.42%), Query Frame = 1
Query: 28 TVKDGGRNDRLSWSKRAEHRLREELKEIALKRCDDSVAKFAACAREKGMMVVFSCREQNAMMNACLNQHTNADSFEQYKFEREVEL 285
T K+ R+ RLSWS +AEH+LR+EL +IA+ +C D+ KFA CARE G+MV+F CREQN MN CL+Q+TN + F YK +RE E+
Sbjct: 9 TAKERFRSSRLSWSNQAEHKLRQELNDIAIAKCRDTTEKFAVCARESGLMVIFRCREQNKAMNDCLHQYTNDEQFRVYKEKREKEI 94
BLAST of mRNA_P-littoralis_Contig143.45.2 vs. uniprot
Match: A0A3R7H0R3_9STRA (COX assembly mitochondrial protein n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7H0R3_9STRA) HSP 1 Score: 96.3 bits (238), Expect = 1.460e-20 Identity = 44/86 (51.16%), Postives = 64/86 (74.42%), Query Frame = 1
Query: 28 TVKDGGRNDRLSWSKRAEHRLREELKEIALKRCDDSVAKFAACAREKGMMVVFSCREQNAMMNACLNQHTNADSFEQYKFEREVEL 285
T KD R+ RLSWS +AEH+LR+EL +IA+ +C D +KFA CA+ G+MV F CR+ N +NACL+Q+T+A+ F+ Y+ +RE E+
Sbjct: 10 TAKDTFRSSRLSWSNQAEHKLRQELSDIAIAKCRDISSKFAECAKANGLMVAFKCRQHNKDLNACLHQYTSAEQFDIYRQKREKEM 95
BLAST of mRNA_P-littoralis_Contig143.45.2 vs. uniprot
Match: A0A484E0L3_BRELC (COX assembly mitochondrial protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484E0L3_BRELC) HSP 1 Score: 90.9 bits (224), Expect = 1.140e-18 Identity = 41/86 (47.67%), Postives = 60/86 (69.77%), Query Frame = 1
Query: 28 TVKDGGRNDRLSWSKRAEHRLREELKEIALKRCDDSVAKFAACAREKGMMVVFSCREQNAMMNACLNQHTNADSFEQYKFEREVEL 285
T K R+ RLSWS +AEH+L+++L +IA+ +C +FA CAR G M++F CREQN +NACL+Q+TN + FE ++ RE E+
Sbjct: 9 TAKAAFRSSRLSWSNQAEHKLKQQLSDIAIAKCRSVSEQFADCARANGFMIIFKCREQNKALNACLHQYTNDEQFELFRKRREKEM 94
BLAST of mRNA_P-littoralis_Contig143.45.2 vs. uniprot
Match: W2NEW3_PHYPR (COX assembly mitochondrial protein n=7 Tax=Phytophthora TaxID=4783 RepID=W2NEW3_PHYPR) HSP 1 Score: 90.9 bits (224), Expect = 1.270e-18 Identity = 44/92 (47.83%), Postives = 62/92 (67.39%), Query Frame = 1
Query: 28 TVKDGGRNDRLSWSKRAEHRLREELKEIALKRCDDSVAKFAACAREKGMMVVFSCREQNAMMNACLNQHTNADSFEQYKFEREVELHREAQA 303
T K R+ RLSWS +AEH+L++EL +IA+ +C KFA CA+ G+MV F CR+ N +NACL+Q+TN + FE Y+ RE E+ E +A
Sbjct: 9 TAKAKFRSSRLSWSNQAEHKLKQELSDIAIAKCRSVSEKFAECAKANGLMVAFKCRDHNKALNACLHQYTNDEQFEIYRKRREKEMLHEEKA 100
BLAST of mRNA_P-littoralis_Contig143.45.2 vs. uniprot
Match: A0A5D6XX76_9STRA (COX assembly mitochondrial protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XX76_9STRA) HSP 1 Score: 90.9 bits (224), Expect = 1.430e-18 Identity = 42/86 (48.84%), Postives = 62/86 (72.09%), Query Frame = 1
Query: 28 TVKDGGRNDRLSWSKRAEHRLREELKEIALKRCDDSVAKFAACAREKGMMVVFSCREQNAMMNACLNQHTNADSFEQYKFEREVEL 285
T K+ R+ RLSWS +AEH+LR+EL +IA+ +C D A FAACA+E+G++VVF CR N MN CL+Q T+ + F+ Y+ +R ++
Sbjct: 16 TAKEHFRSSRLSWSNQAEHKLRQELNDIAIAKCRDVTASFAACAQEQGLLVVFKCRALNKAMNDCLHQFTSDEQFQAYRDKRSKDV 101
BLAST of mRNA_P-littoralis_Contig143.45.2 vs. uniprot
Match: H3GT38_PHYRM (Uncharacterized protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GT38_PHYRM) HSP 1 Score: 97.4 bits (241), Expect = 7.950e-18 Identity = 46/86 (53.49%), Postives = 63/86 (73.26%), Query Frame = 1
Query: 28 TVKDGGRNDRLSWSKRAEHRLREELKEIALKRCDDSVAKFAACAREKGMMVVFSCREQNAMMNACLNQHTNADSFEQYKFEREVEL 285
T K+ R+ RLSWS +AEH+LR+EL +IA+ +C + KFA CA+ G+MVVF CRE N +NACL+Q+TNA+ FE Y+ RE E+
Sbjct: 711 TAKNKFRSSRLSWSNQAEHKLRQELSDIAIAKCRNVSEKFAECAKANGLMVVFKCRENNRELNACLHQYTNAEQFEIYRQRREKEM 796
BLAST of mRNA_P-littoralis_Contig143.45.2 vs. uniprot
Match: A0A3M6VM01_9STRA (COX assembly mitochondrial protein n=4 Tax=Peronosporaceae TaxID=4777 RepID=A0A3M6VM01_9STRA) HSP 1 Score: 88.2 bits (217), Expect = 1.510e-17 Identity = 40/83 (48.19%), Postives = 59/83 (71.08%), Query Frame = 1
Query: 28 TVKDGGRNDRLSWSKRAEHRLREELKEIALKRCDDSVAKFAACAREKGMMVVFSCREQNAMMNACLNQHTNADSFEQYKFERE 276
T K R+ RLSWS +AEH+L++EL +IA+ +C KFA CA+ G++VVF C++ N +NACL+Q+TN + FE Y+ +RE
Sbjct: 9 TAKAQFRSSRLSWSNQAEHKLKQELSDIAIAKCHSVAEKFAECAKANGLLVVFKCQDHNKALNACLHQYTNDEQFEIYRQKRE 91
BLAST of mRNA_P-littoralis_Contig143.45.2 vs. uniprot
Match: K3X183_GLOUD (Uncharacterized protein n=2 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3X183_GLOUD) HSP 1 Score: 95.9 bits (237), Expect = 2.700e-17 Identity = 44/86 (51.16%), Postives = 62/86 (72.09%), Query Frame = 1
Query: 28 TVKDGGRNDRLSWSKRAEHRLREELKEIALKRCDDSVAKFAACAREKGMMVVFSCREQNAMMNACLNQHTNADSFEQYKFEREVEL 285
T K+ R+ RLSWS +AEH+LR+EL +IA+ +C KFA CA+E+G+MVV CREQN MNACL+++TN + F+ Y+ R E+
Sbjct: 817 TAKENFRSSRLSWSNQAEHKLRQELNDIAIAKCRSITEKFAECAKEQGLMVVVRCREQNKAMNACLHEYTNPEQFQLYRERRSKEV 902
BLAST of mRNA_P-littoralis_Contig143.45.2 vs. uniprot
Match: W7TAA2_9STRA (COX assembly mitochondrial protein n=3 Tax=Monodopsidaceae TaxID=425072 RepID=W7TAA2_9STRA) HSP 1 Score: 87.0 bits (214), Expect = 3.220e-17 Identity = 45/88 (51.14%), Postives = 59/88 (67.05%), Query Frame = 1
Query: 34 KDGGRNDRLSWSKRAEHRLREELKEIALKRCDDSVAKFAACAREKGMMVVFSCREQNAMMNACLNQHTNADSFEQYKFEREVELHREA 297
+DG R RL +SKRAE LR+EL A K+C + +A FAACA+E GM V+F CR N MNACL+Q+T+ FE++K R + L EA
Sbjct: 16 RDGSREGRLRFSKRAEQHLRDELALHARKQCQEPMAAFAACAKENGMFVIFKCRALNNAMNACLSQYTSESKFEEWKQTRGLSLAEEA 103 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig143.45.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 18
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig143.45.2 >prot_P-littoralis_Contig143.45.2 ID=prot_P-littoralis_Contig143.45.2|Name=mRNA_P-littoralis_Contig143.45.2|organism=Pylaiella littoralis U1_48|type=polypeptide|length=100bp MATVKDGGRNDRLSWSKRAEHRLREELKEIALKRCDDSVAKFAACAREKGback to top mRNA from alignment at P-littoralis_Contig143:186932..190852- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig143.45.2 ID=mRNA_P-littoralis_Contig143.45.2|Name=mRNA_P-littoralis_Contig143.45.2|organism=Pylaiella littoralis U1_48|type=mRNA|length=3921bp|location=Sequence derived from alignment at P-littoralis_Contig143:186932..190852- (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig143:186932..190852- >mRNA_P-littoralis_Contig143.45.2 ID=mRNA_P-littoralis_Contig143.45.2|Name=mRNA_P-littoralis_Contig143.45.2|organism=Pylaiella littoralis U1_48|type=CDS|length=300bp|location=Sequence derived from alignment at P-littoralis_Contig143:186932..190852- (Pylaiella littoralis U1_48)back to top |