mRNA_P-littoralis_Contig143.31.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig143.31.1
Unique NamemRNA_P-littoralis_Contig143.31.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig143.31.1 vs. uniprot
Match: D8LC00_ECTSI (Glutaredoxin n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LC00_ECTSI)

HSP 1 Score: 162 bits (410), Expect = 4.590e-50
Identity = 77/98 (78.57%), Postives = 89/98 (90.82%), Query Frame = 1
Query:    1 SIKELVGKHGVVVYSKSYCPFCTKAKNALTAIGAKFEVVELDKMSNGGAIQDALQSITGQRSVPNVFIGGETIGGGDDTVRLHKSGELLTKVTAAGAV 294
            ++ E+VG+HGVVVYSK+YCPFCTKAK AL  +GAK+E++ELD++ NG AIQDALQSITGQRSVPNVFIGG +IGGGDDTVRL KSGELLTKVTA GAV
Sbjct:    7 AVNEMVGQHGVVVYSKTYCPFCTKAKKALKDVGAKYELIELDEVDNGSAIQDALQSITGQRSVPNVFIGGTSIGGGDDTVRLQKSGELLTKVTAVGAV 104          
BLAST of mRNA_P-littoralis_Contig143.31.1 vs. uniprot
Match: A0A7S1B3V4_9STRA (Hypothetical protein n=2 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1B3V4_9STRA)

HSP 1 Score: 119 bits (297), Expect = 9.060e-33
Identity = 57/98 (58.16%), Postives = 78/98 (79.59%), Query Frame = 1
Query:    4 IKELVGKHGVVVYSKSYCPFCTKAKNALTAIGA-KFEVVELDKMSNGGAIQDALQSITGQRSVPNVFIGGETIGGGDDTVRLHKSGELLTKVTAAGAV 294
            I++ +G + VVV+SK+YCPFCTKAK +L  +G   F+ VELD+M++G +IQ  L S+TGQR+VPNVFIGG++IGGGDDT  L +SG+L T + AAGA+
Sbjct:   13 IQDTIGSNKVVVFSKTYCPFCTKAKRSLANVGCTNFKSVELDQMADGSSIQSGLLSLTGQRTVPNVFIGGKSIGGGDDTAALEQSGKLKTMLQAAGAL 110          
BLAST of mRNA_P-littoralis_Contig143.31.1 vs. uniprot
Match: A0A836CIL9_9STRA (Thioredoxin-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CIL9_9STRA)

HSP 1 Score: 118 bits (295), Expect = 1.400e-32
Identity = 57/97 (58.76%), Postives = 71/97 (73.20%), Query Frame = 1
Query:    4 IKELVGKHGVVVYSKSYCPFCTKAKNALTAIGAKFEVVELDKMSNGGAIQDALQSITGQRSVPNVFIGGETIGGGDDTVRLHKSGELLTKVTAAGAV 294
            IK  V    VV+YSKSYCP+C KAK AL AI A FE +ELD++SNG  IQ AL+ +TG  +VP VF+GG+ IGGGDDT R  ++GEL+  VTAAG +
Sbjct:    5 IKAKVASTPVVIYSKSYCPYCAKAKRALQAIKAHFEAIELDQVSNGAEIQQALKGVTGSSTVPQVFVGGKYIGGGDDTARKQQNGELVQLVTAAGGL 101          
BLAST of mRNA_P-littoralis_Contig143.31.1 vs. uniprot
Match: V4NKN5_EUTSA (Glutaredoxin domain-containing protein n=1 Tax=Eutrema salsugineum TaxID=72664 RepID=V4NKN5_EUTSA)

HSP 1 Score: 117 bits (293), Expect = 3.470e-32
Identity = 58/96 (60.42%), Postives = 72/96 (75.00%), Query Frame = 1
Query:    7 KELVGKHGVVVYSKSYCPFCTKAKNALTAIGAKFEVVELDKMSNGGAIQDALQSITGQRSVPNVFIGGETIGGGDDTVRLHKSGELLTKVTAAGAV 294
            KE+V  + VVV+SKSYCPFC K K  L  +GAKF  VELDK S+GG+IQ AL   TGQR+VPNVFIGG+ IGG D T+ +H SG+L+  +T AGA+
Sbjct:    7 KEIVSSNAVVVFSKSYCPFCVKVKELLQKLGAKFIAVELDKESDGGSIQAALGEWTGQRTVPNVFIGGKHIGGCDATMGMHSSGKLVPLLTEAGAI 102          
BLAST of mRNA_P-littoralis_Contig143.31.1 vs. uniprot
Match: A0A6D2L6S0_9BRAS (Glutaredoxin domain-containing protein n=1 Tax=Microthlaspi erraticum TaxID=1685480 RepID=A0A6D2L6S0_9BRAS)

HSP 1 Score: 116 bits (291), Expect = 8.340e-32
Identity = 56/96 (58.33%), Postives = 72/96 (75.00%), Query Frame = 1
Query:    7 KELVGKHGVVVYSKSYCPFCTKAKNALTAIGAKFEVVELDKMSNGGAIQDALQSITGQRSVPNVFIGGETIGGGDDTVRLHKSGELLTKVTAAGAV 294
            K+LV  + VVV+SKS+CP+C + K+ L  +GAKF  VELDK S+G  IQ AL   TGQR+VPNVFIGG+ IGG D T  LHK+G+L+T +T AGA+
Sbjct:    7 KDLVSNNAVVVFSKSFCPYCVRVKDLLKQLGAKFIAVELDKESDGSKIQSALAEWTGQRTVPNVFIGGKHIGGCDSTTNLHKNGKLVTLLTEAGAI 102          
BLAST of mRNA_P-littoralis_Contig143.31.1 vs. uniprot
Match: A0A6P3ZZT2_ZIZJJ (glutaredoxin-like n=2 Tax=Ziziphus jujuba TaxID=326968 RepID=A0A6P3ZZT2_ZIZJJ)

HSP 1 Score: 115 bits (289), Expect = 1.370e-31
Identity = 56/96 (58.33%), Postives = 70/96 (72.92%), Query Frame = 1
Query:    7 KELVGKHGVVVYSKSYCPFCTKAKNALTAIGAKFEVVELDKMSNGGAIQDALQSITGQRSVPNVFIGGETIGGGDDTVRLHKSGELLTKVTAAGAV 294
            KE+V  + VVV+SK+YCP+C   K   T +GA F+V+ELD  S+G  IQ AL  ITGQR+VPNVFIGG  IGG D+T  LHK G+L+T +T AGAV
Sbjct:    7 KEIVSSNPVVVFSKTYCPYCVTVKQLFTQLGATFKVIELDTESDGSEIQSALAEITGQRTVPNVFIGGNHIGGCDNTKALHKDGKLITLLTEAGAV 102          
BLAST of mRNA_P-littoralis_Contig143.31.1 vs. uniprot
Match: H3G9V5_PHYRM (Glutaredoxin domain-containing protein n=20 Tax=Phytophthora TaxID=4783 RepID=H3G9V5_PHYRM)

HSP 1 Score: 115 bits (287), Expect = 2.530e-31
Identity = 53/98 (54.08%), Postives = 73/98 (74.49%), Query Frame = 1
Query:    1 SIKELVGKHGVVVYSKSYCPFCTKAKNALTAIGAKFEVVELDKMSNGGAIQDALQSITGQRSVPNVFIGGETIGGGDDTVRLHKSGELLTKVTAAGAV 294
            +++  +    VVVYSKSYCP+CTK K  LT +GAKFEVVELD+++ G   QDAL+ +TGQ +VPNVF+GG++IGG  D  +LHKSG+L   +  +GA+
Sbjct:    7 TVEAQIAASPVVVYSKSYCPYCTKTKTLLTELGAKFEVVELDQINGGSEQQDALEDLTGQSTVPNVFVGGQSIGGNSDVRKLHKSGDLEPLLKHSGAL 104          
BLAST of mRNA_P-littoralis_Contig143.31.1 vs. uniprot
Match: A0A7S0Q1V6_9EUKA (Hypothetical protein n=1 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0Q1V6_9EUKA)

HSP 1 Score: 115 bits (288), Expect = 2.530e-31
Identity = 54/97 (55.67%), Postives = 74/97 (76.29%), Query Frame = 1
Query:    4 IKELVGKHGVVVYSKSYCPFCTKAKNALTAIGAKFEVVELDKMSNGGAIQDALQSITGQRSVPNVFIGGETIGGGDDTVRLHKSGELLTKVTAAGAV 294
            +++LV +H V+V+SKSYCP+C  AK  LT  GAKF  +ELDK  +G AIQ+AL  +TGQ++VPNVF+GG++IGGG +T  L +SGEL  K+ AA A+
Sbjct:   20 VEKLVEEHAVMVFSKSYCPYCKLAKEVLTKEGAKFHAIELDKRDDGNAIQNALLKLTGQKTVPNVFVGGKSIGGGSETKALSQSGELKKKLVAAKAL 116          
BLAST of mRNA_P-littoralis_Contig143.31.1 vs. uniprot
Match: A9NY07_PICSI (Glutaredoxin domain-containing protein n=5 Tax=cellular organisms TaxID=131567 RepID=A9NY07_PICSI)

HSP 1 Score: 115 bits (287), Expect = 3.490e-31
Identity = 57/96 (59.38%), Postives = 72/96 (75.00%), Query Frame = 1
Query:    7 KELVGKHGVVVYSKSYCPFCTKAKNALTAIGAKFEVVELDKMSNGGAIQDALQSITGQRSVPNVFIGGETIGGGDDTVRLHKSGELLTKVTAAGAV 294
            KE+V  + VVV+SK+YCP+CT+ K  L+++GAK +VVELD  S+G  IQ ALQ  TGQR+VPNVFIGG  IGG DDTV  H SG+L+  +T AG V
Sbjct:   20 KEIVSSNSVVVFSKTYCPYCTQVKQLLSSLGAKTKVVELDTESDGKEIQTALQEWTGQRTVPNVFIGGTHIGGCDDTVAKHNSGKLVPLLTEAGGV 115          
BLAST of mRNA_P-littoralis_Contig143.31.1 vs. uniprot
Match: A0A4Y7JHQ9_PAPSO (Glutaredoxin domain-containing protein n=2 Tax=Papaver somniferum TaxID=3469 RepID=A0A4Y7JHQ9_PAPSO)

HSP 1 Score: 114 bits (286), Expect = 4.030e-31
Identity = 56/96 (58.33%), Postives = 69/96 (71.88%), Query Frame = 1
Query:    7 KELVGKHGVVVYSKSYCPFCTKAKNALTAIGAKFEVVELDKMSNGGAIQDALQSITGQRSVPNVFIGGETIGGGDDTVRLHKSGELLTKVTAAGAV 294
            KE+V  + VVVYSKSYCPFC + K  L+ +GA F+ VELDK S+G   Q AL   TGQR+VPNVFIGG  IGG D T  LHK+G+L+  +T AGA+
Sbjct:    7 KEIVSSNPVVVYSKSYCPFCVQVKKLLSELGASFKAVELDKESDGNETQSALAQWTGQRTVPNVFIGGNHIGGCDSTTGLHKAGKLVPLLTEAGAI 102          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig143.31.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LC00_ECTSI4.590e-5078.57Glutaredoxin n=2 Tax=Ectocarpus TaxID=2879 RepID=D... [more]
A0A7S1B3V4_9STRA9.060e-3358.16Hypothetical protein n=2 Tax=Corethron hystrix Tax... [more]
A0A836CIL9_9STRA1.400e-3258.76Thioredoxin-like protein n=1 Tax=Tribonema minus T... [more]
V4NKN5_EUTSA3.470e-3260.42Glutaredoxin domain-containing protein n=1 Tax=Eut... [more]
A0A6D2L6S0_9BRAS8.340e-3258.33Glutaredoxin domain-containing protein n=1 Tax=Mic... [more]
A0A6P3ZZT2_ZIZJJ1.370e-3158.33glutaredoxin-like n=2 Tax=Ziziphus jujuba TaxID=32... [more]
H3G9V5_PHYRM2.530e-3154.08Glutaredoxin domain-containing protein n=20 Tax=Ph... [more]
A0A7S0Q1V6_9EUKA2.530e-3155.67Hypothetical protein n=1 Tax=Coccolithus braarudii... [more]
A9NY07_PICSI3.490e-3159.38Glutaredoxin domain-containing protein n=5 Tax=cel... [more]
A0A4Y7JHQ9_PAPSO4.030e-3158.33Glutaredoxin domain-containing protein n=2 Tax=Pap... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig143contigP-littoralis_Contig143:131801..133008 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog72664.XP_006405503.1
PFAMsGlutaredoxin
Model size297
Max annot lvl35493|Streptophyta
KEGG koko:K03676
Hectar predicted targeting categoryother localisation
Exons3
Evalue5.69e-33
EggNOG OGsCOG0695@1|root,KOG1752@2759|Eukaryota,37V77@33090|Viridiplantae,3GJCN@35493|Streptophyta,3I0CI@3699|Brassicales
Ec32 ortholog descriptionGlutaredoxin
Ec32 orthologEc-20_003920.1
DescriptionGlutaredoxin
Cds size297
COG categoryO
BRITEko00000,ko03110
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789671.9116933-CDS-P-littoralis_Contig143:131800..1319111680789671.9116933-CDS-P-littoralis_Contig143:131800..131911Pylaiella littoralis U1_48CDSP-littoralis_Contig143 131801..131911 +
1680789671.9262633-CDS-P-littoralis_Contig143:132511..1326131680789671.9262633-CDS-P-littoralis_Contig143:132511..132613Pylaiella littoralis U1_48CDSP-littoralis_Contig143 132512..132613 +
1680789671.9351027-CDS-P-littoralis_Contig143:132924..1330081680789671.9351027-CDS-P-littoralis_Contig143:132924..133008Pylaiella littoralis U1_48CDSP-littoralis_Contig143 132925..133008 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig143.31.1prot_P-littoralis_Contig143.31.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig143 131801..133008 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig143.31.1

>prot_P-littoralis_Contig143.31.1 ID=prot_P-littoralis_Contig143.31.1|Name=mRNA_P-littoralis_Contig143.31.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=99bp
SIKELVGKHGVVVYSKSYCPFCTKAKNALTAIGAKFEVVELDKMSNGGAI
QDALQSITGQRSVPNVFIGGETIGGGDDTVRLHKSGELLTKVTAAGAV*
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mRNA from alignment at P-littoralis_Contig143:131801..133008+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig143.31.1 ID=mRNA_P-littoralis_Contig143.31.1|Name=mRNA_P-littoralis_Contig143.31.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1208bp|location=Sequence derived from alignment at P-littoralis_Contig143:131801..133008+ (Pylaiella littoralis U1_48)
TCTATTAAGGAGCTGGTGGGCAAGCACGGCGTGGTCGTGTATTCCAAGTC GTACTGCCCTTTCTGCACAAAGGCCAAGAATGCTTTGACCGCAATCGGTG CCAAGTTCGAGGTGTGTGAGCAGCCCGCCGTGTCAAACTGACGACCCCTA TTACACGGTATCATACCACAGCAAGACCATTACGAGAGAATCGGGGGGGG GGGGAGGGGAGGAGTTCCATCGATTTCATCGTTTCAAATTTTTACCCGAG AATACTGCCCGCTACAGCCTTGATTTTTTTTGTCGAGACTTGCCGATCGG TTTCGACGCTACTGCTCTTGTGCACCCGCCTGAAAGAACCGGTACGGTCT GCGTGTGATGTTCGACCATCGCACTTCTGCAGGGCAGTTGCTCCGAAGGT TTTTTTTTTTTGCTGAGGTTTTTGTCAGAGGGCCGACCGACCTGCGATCA TGCGTCGCCTCCGCGCCCGAATGTTGAATCTTACTTAATCTTGCCCCCAA AAATCATACGAGTACAGTATAAAAAAGCAAAATGAGCTCCATCTCGAAAA TGTTTTGCGTCAATGGTGACGGTCAACCTAAGGAAGGCATGGAAACGAAC GATAACATTATAGCATCCACACTTTGTACCCCGCCCCCCCGCGCGCTGCT ACCATATCCCTCTTGCGGTGTGTTTTTTTGGTGTGTGGGCGACGCTGTTT TCGTCGAGCAGGTGGTTGAGCTGGATAAGATGTCGAACGGTGGAGCCATC CAGGATGCCCTCCAGTCAATCACAGGCCAGCGCTCGGTGCCGAATGTCTT TATCGGCGGGGAGGTAAGACACTGGGCGGGGACGGGTGTGCGGATTGCGG GGAAGACAACTAAAGAGGGTTACTGAGTGAAACAAATGACAGGCACCGCA CGTCGCAGGATTCTTGGCCGACACCCCATATACCGTTGTGAACTCGCTCA AACGTTCAGTCTACCGACGTTACCACCCGCCGTCCAATCGGGTTCTGTTG CGCCACTTATTGCTGTGTGTCTCGTTTCGACGAAGATTATTTCCATTTAT TTTCGTTCTCACATCCCCACCCCTCCACGTTGCCGCTTGCTGTGCTCGCT TTTGTCTGGTGTGGCACGCGGCAGACGATCGGCGGGGGGGACGATACAGT GCGCCTGCACAAGTCTGGAGAGCTGCTGACCAAGGTCACGGCCGCTGGTG CCGTCTGA
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Coding sequence (CDS) from alignment at P-littoralis_Contig143:131801..133008+

>mRNA_P-littoralis_Contig143.31.1 ID=mRNA_P-littoralis_Contig143.31.1|Name=mRNA_P-littoralis_Contig143.31.1|organism=Pylaiella littoralis U1_48|type=CDS|length=297bp|location=Sequence derived from alignment at P-littoralis_Contig143:131801..133008+ (Pylaiella littoralis U1_48)
TCTATTAAGGAGCTGGTGGGCAAGCACGGCGTGGTCGTGTATTCCAAGTC
GTACTGCCCTTTCTGCACAAAGGCCAAGAATGCTTTGACCGCAATCGGTG
CCAAGTTCGAGGTGGTTGAGCTGGATAAGATGTCGAACGGTGGAGCCATC
CAGGATGCCCTCCAGTCAATCACAGGCCAGCGCTCGGTGCCGAATGTCTT
TATCGGCGGGGAGACGATCGGCGGGGGGGACGATACAGTGCGCCTGCACA
AGTCTGGAGAGCTGCTGACCAAGGTCACGGCCGCTGGTGCCGTCTGA
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