mRNA_P-littoralis_Contig143.18.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig143.18.1
Unique NamemRNA_P-littoralis_Contig143.18.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig143.18.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig143contigP-littoralis_Contig143:99716..101539 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size374
Hectar predicted targeting categorysignal peptide
Exons2
Cds size252
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789670.564411-UTR-P-littoralis_Contig143:99715..998101680789670.564411-UTR-P-littoralis_Contig143:99715..99810Pylaiella littoralis U1_48UTRP-littoralis_Contig143 99716..99810 -
1680789670.605847-UTR-P-littoralis_Contig143:101512..1015391680789670.605847-UTR-P-littoralis_Contig143:101512..101539Pylaiella littoralis U1_48UTRP-littoralis_Contig143 101513..101539 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789670.5761073-CDS-P-littoralis_Contig143:99810..998841680789670.5761073-CDS-P-littoralis_Contig143:99810..99884Pylaiella littoralis U1_48CDSP-littoralis_Contig143 99811..99884 -
1680789670.596231-CDS-P-littoralis_Contig143:101334..1015121680789670.596231-CDS-P-littoralis_Contig143:101334..101512Pylaiella littoralis U1_48CDSP-littoralis_Contig143 101335..101512 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig143.18.1prot_P-littoralis_Contig143.18.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig143 99811..101512 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig143.18.1

>prot_P-littoralis_Contig143.18.1 ID=prot_P-littoralis_Contig143.18.1|Name=mRNA_P-littoralis_Contig143.18.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=84bp
MGVTLSAWCGASQTTSCVDGLVEARPLSLSLLIVVLAYISQHLRVAIPYT
KGAHVGTRCGVRQPSELRQTHLEKKRITSARRV*
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mRNA from alignment at P-littoralis_Contig143:99716..101539-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig143.18.1 ID=mRNA_P-littoralis_Contig143.18.1|Name=mRNA_P-littoralis_Contig143.18.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1824bp|location=Sequence derived from alignment at P-littoralis_Contig143:99716..101539- (Pylaiella littoralis U1_48)
TCGAGCTCCTGAGGCTTCGGCGGGTGCATGGGTGTGACACTCTCTGCGTG
GTGTGGCGCATCTCAAACGACCTCGTGCGTGGATGGATTGGTCGAAGCAC
GTCCTTTATCTCTCTCTCTCTTGATCGTTGTTCTAGCCTACATCTCCCAA
CACCTACGAGTAGCGATACCCTACACCAAGGGAGCACACGTTGGCACGCG
ATGTGGTAAGTGAAGCGCAGCGTGTCTCTGTGACAACCTGCTGTAAATGT
TCTGCAGCGAATCAGTATTTAGCACGTAGTACAAGGGCCGCTTTCTCACC
CTCATCACACAGCTTCGTGCTAATAACACCTAGTGTGCCACATGCCTGTG
CGCATTTGCTCTGAACCGTTTTTTTTTTGGTGCGAACGGCAGCGGAAAGC
CAAACACCAATTACTGCTGTGCTCGTATGTACCAAGTGCTACATTTAAAC
ACTCGGAGATTCATGTGCTCAAATCCCAGAATCTGGTACAAGAACAAGAA
TTGTACACTGTGCGTTTGTGCTCCTAGGATCCCGTATCCTAATGCACGCG
ACTGAGCTACAAGTACGAATAATTTTAGCAGGGAGATCCAGCCGGCATAG
CAGGGGGTAAAATACGGTAACTACATGACTTACGGGTTGCCTGGGCGATA
AAAAATTCCTTACTGAAAAACCAAATTTTCGATCTGAAAGAACATTTTCA
GTCTTGAATCAAGTCAAAAGCGCTTATTTTGATAAGGCTTAAACACGGGC
TGTCGTCTGTGCGTACCCGATAACAAGGATTAAATCAGGAGAAGACGTAA
TGCAGTAGCTTCATCTGCGTCGGCGCATTCAGATCTTCTACAAGTACTGG
GGCTTAGTTATCGAAGTTCGCAGCATTGGCACAAGAACTCCGCAGGATCC
CTGAAAAACTCCGCGATCCGGACGGACGCTAAACGTTTGACGCAACTGTA
CTCGCCGCCATCGGCATCAATCTTCTGAACTGCGGTTCGTCCGAGGTAGC
TATTGGCATGAGCTACTGCTGTTGACCCGTAGTTTTGGAGGTTAGGGTAT
GTGGCGTCGAGTACAGCAGTGGGAGATGGCACAGCAGTGGAAGATGATTT
TTGGAATCTGTCCATTTTGCGGAGTTTTTTATCCTCTACTGCGACCATCG
ATATCTAGGCCCCAGCAGCAGCTCTGAATGCGCCGACGCAGATGTAGCTA
CTACATGACGTATTCTCCTGATTTAATCCTTGTTATCGGGTACGCACAGA
CGACAGCCCACGTTTAAGCCTTATCAAAATAAGCTCTTTTGACTTGATTT
TAGAGTCGTCAATTTTTTATCTTGATATTTATGTAAGAGATTGGAGGTAG
ACATGTGATATGCATGTAAAGAGGAGCCCCCGCCGCCGCTGTGTGCGATA
ACCAACCGTTTTCCTCATTCCCGACACCTTCCTACTGGTGTGAGGTACCC
AGTGTGTGAGTGTCAGGGCCCGTTCACTGTTTTCAAAATCCGTGCCTCTC
GACGATCGGTTGCCAGGGAACCCTTAAGACACGATATCAGGCCACACCGC
AAAGTCAACTTCGAAAGAAATCCACAGCGTAAATCAGAGATTGATTATTT
CTCACCAAAATAATCTGCTTCCACCCGTATCCACGTATGGGGGACGCGAT
CGCAGGAGTACGCCAACCGAGTGAGCTACGTCAAACACACCTGGAAAAAA
AAAGGATCACTAGCGCGCGGCGTGTCTGAGCCAACCGTAGAGCGAGATCC
GAAATGTTGGCAACAACCCGAGACAGCGGCCCGTGTAACGTCACCCTTGG
CCCATCAGCAGCAACCAAAGCGAG
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Coding sequence (CDS) from alignment at P-littoralis_Contig143:99716..101539-

>mRNA_P-littoralis_Contig143.18.1 ID=mRNA_P-littoralis_Contig143.18.1|Name=mRNA_P-littoralis_Contig143.18.1|organism=Pylaiella littoralis U1_48|type=CDS|length=252bp|location=Sequence derived from alignment at P-littoralis_Contig143:99716..101539- (Pylaiella littoralis U1_48)
ATGGGTGTGACACTCTCTGCGTGGTGTGGCGCATCTCAAACGACCTCGTG
CGTGGATGGATTGGTCGAAGCACGTCCTTTATCTCTCTCTCTCTTGATCG
TTGTTCTAGCCTACATCTCCCAACACCTACGAGTAGCGATACCCTACACC
AAGGGAGCACACGTTGGCACGCGATGTGGAGTACGCCAACCGAGTGAGCT
ACGTCAAACACACCTGGAAAAAAAAAGGATCACTAGCGCGCGGCGTGTCT
GA
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