mRNA_P-littoralis_Contig143.17.1 (mRNA) Pylaiella littoralis U1_48
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Overview
Homology
BLAST of mRNA_P-littoralis_Contig143.17.1 vs. uniprot
Match: D8LC03_ECTSI (HET-R n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LC03_ECTSI) HSP 1 Score: 495 bits (1274), Expect = 1.700e-163 Identity = 341/715 (47.69%), Postives = 411/715 (57.48%), Query Frame = 1
Query: 1 AIVNDTPPSSKSPNPYKRRGLLPRRSPPPLQQKFDVDDCSSSKGTTGGLRPAPPTSPPGIYF-DGRGSPILLDSSCRDSRASSGSASPHIRLWYPADPRPSSGGNGEVNDGGGDESAYVVHPTFRRMFDDRV-------------------------GGIGGGGSQRASSRRP-----THGAVGLSRSQPAETAAVSKPSERGRKTGPATRGGGREGTNAYFSVEQTDTSGKQRRSAPTTGPHRVVDGRRSLSTQDGG--APSPPTKSTARVGPNLKAFPGACSNNLNTRP-----QRAHAGRGEVERQKPSREPSAETAATVRGRVRDLQISPGRPRRRESPGRLSTRDNCTAGGDQRFKASAVFLGHTEQVLALARHKDILFSAAVDGTAKAWDTYSQHCLATYEGHRKAVWGMQVSNRTLITGSADCTVRFWDIETAQSLHVVDLRSSVRDVVIVGDFLAVATSNPGVEVIDLHHMKRRGRLEGHLLAVSAVAAIEGEGLLVTGSHDTFLRQVFYLCPHVQTVWDPFSGNCEAVLGGHGGTVGALCTMSRPPPVQANRKTLMNEGALIVSGSGDSTVRVWGRAGVVGE-LREWACRAVLEGHRHGVWAVHGSSTSGVFATXXXXXXXXXXXXXXXT----GNVSGDNVMLGGGQIVSEEHDQRQHHRWECVGGVRGAAGAVGAVLVNEEALVFGTSEALIARFPLKSCMPTR 2016
A N++ S SPNPYKRRGLL R P P Q+KFD+D SSS G +RP TSP G GSP S + S+ SP R WYPA RPSS NGE G D+SAYVVHP+FR +F +R GG+ GG + S RRP + G S S + V++ SER + PAT G R +FS + +QRR TTG D + S Q GG A PT + G A P +N + P QR + GR VE++ +T A +RGRVRD+Q RPRR+E GR+ D+ GD + ++SAVF+GH+EQVLALAR +DILFSA+ DGTAKAWDT SQ CLATY+GH AVWGMQV+ R ETAQSL V+DLRS+VRDVV+VGDFLAVATSNPG+E+++L M+R G LEGHLLAVSA+A++EGE LLV+GSHDTF+R VWDP + +AVLGGHGGTVGA+CT+S P + K E ALIVSGSGD T RVWG+ GV + REW CRAVLEGHRHGVWAV+GSS SG FAT GN + LG G+ S WE VGGVRG AGAVGAVL++E+ALVFGTSEALIARFPL+ CMP R
Sbjct: 27 AAANNSSDCSTSPNPYKRRGLLRRIDPQP-QRKFDIDRNSSSTG----VRPPSLTSPTSTSVAPGGGSPSWNSLSAPGTPRSN---SPSKRPWYPASRRPSSRDNGES---GADDSAYVVHPSFRHLFTERAHSSSANDPSRSRQVYSQGPHHGASGGGVSGGEN---SGRRPGTAVFSVGGWDPSYSSSTKETTVARRSERPGEVEPATAGRWR---GVHFSKAKHSPPEQQRRDT-TTGIGSAPD---ASSRQRGGERASFSPTDRWSGFGSKSDASPARLRSNDHRSPREMGGQRPYVGRETVEQEGAP----LKTVAAMRGRVRDMQAR-RRPRRQERGGRMPPADSRRGEGDPKLRSSAVFIGHSEQVLALARCEDILFSASADGTAKAWDTCSQQCLATYKGHHGAVWGMQVTGRXXXXXXXXXXXXXXXXETAQSLSVLDLRSAVRDVVMVGDFLAVATSNPGIEIVELKRMRRHGTLEGHLLAVSALASLEGENLLVSGSHDTFIR-----------VWDPDTLTSKAVLGGHGGTVGAICTVSWPQGGHDHAKRAAEE-ALIVSGSGDGTARVWGQQGVGDKGQREWTCRAVLEGHRHGVWAVYGSSLSGAFATGGGDATVKLWAPTTTNNAEHGNEEAERGNLGSGE--SRHQXXXXXXXWELVGGVRGTAGAVGAVLIDEQALVFGTSEALIARFPLQLCMPAR 701
BLAST of mRNA_P-littoralis_Contig143.17.1 vs. uniprot
Match: A0A6H5JEV4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEV4_9PHAE) HSP 1 Score: 160 bits (405), Expect = 1.970e-39 Identity = 157/420 (37.38%), Postives = 206/420 (49.05%), Query Frame = 1
Query: 1 AIVNDTPPSSKSPNPYKRRGLLPRRSPPPLQQKFDVDDCSSSKGTTGGLRPAPPTSPPGIYF-DGRGSPILLDSSCRDSRASSGSASPHIRLWYPADPRPSSGGNGEVNDGGGDESAYVVHPTFRRMFDDRVGGIG---------------------GGGSQRASS-RRPTHGAVGLSRSQPAETAA-----VSKPSERGRKTGPATRGGGREGTNAYFSVEQTDTSGKQRRSAPTTGPHRVVDGRRSLSTQDGG--APSPPTKSTARVGPNLKAFPGACSNNLNTRP-----QRAHAGRGEVERQKPSREPSAETAATVRGRVRDLQISPGRPRRRESPGRLSTRDNCTAGGDQRFKASAVFLGHTEQVLALARHKDILFSAAVDGTAK----AWDTY------SQHCLATYEGHRKAV 1125
A ND+P S S NPYKRRGLL RR P P Q+KFD+D SSS G +RP TSP G SP S + S+ SP+ R WYPA RPSS +GE G D+SAYVVHP+FR +F + G GGGS +S RRP + P+ +++ V++ SER + PA G R A+FS + + +Q R+ TTG D + S Q GG A PT ++ G A P N + P QR +A R VE+ EP A +R RVRD+Q GRPRR+E GR+ D+ GD R ++S VF+GH++QVLALAR +DILFSA+ DGTAK +W + S + + GH A+
Sbjct: 27 AAANDSPDCSMSSNPYKRRGLLRRRDPQP-QRKFDIDRNSSSAG----VRPPLLTSPVSTSVAPGGESPSWNSLSVPGTPRSN---SPNKRPWYPAGRRPSSRDSGES---GADDSAYVVHPSFRHLFTESAHSSGANDPSRSRQVYSQGPHHGSSRGGGSXXENSGRRPGTAVFSVGGGDPSYSSSTTETTVARQSERSGEVEPAAAGRWR---GAHFSKAEHNPREQQHRNTTTTGIGSAPD---ASSRQRGGERASFSPTGRSSVFGSESDASPPRPRRNDHRSPREMGGQRPYAERETVEQGGAPLEP----VAAMRSRVRDMQAR-GRPRRKERGGRMPPADSRRGEGDPRLRSS-VFIGHSKQVLALARREDILFSASADGTAKVNQPSWSPFVASIGRSSNLCISLSGHEGAM 423
BLAST of mRNA_P-littoralis_Contig143.17.1 vs. uniprot
Match: A0A7J9A7E3_9ROSI (Uncharacterized protein n=1 Tax=Gossypium laxum TaxID=34288 RepID=A0A7J9A7E3_9ROSI) HSP 1 Score: 79.0 bits (193), Expect = 2.530e-13 Identity = 47/110 (42.73%), Postives = 61/110 (55.45%), Query Frame = 1
Query: 1018 RHKDILFSAAVDGTAKAWDTYSQHCLATYEGHRKAVWGMQVSNRT--LITGSADCTVRFWDIETAQSLHVVDLRSSVRDVVI-VGDFLAVATSNPGVEVIDLHHMKRRGR 1338
R D+LFS A D T W + L TY GH AVW VS + LITGSAD TV+ W+++T L+ + S R V VGD LAV T++P +E+ H+KR R
Sbjct: 20 RDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWSCDVSRDSTRLITGSADQTVKLWNVQTGAQLYTFNFGSPARSVDFSVGDKLAVITTDPFMELTSAIHVKRIAR 129
BLAST of mRNA_P-littoralis_Contig143.17.1 vs. uniprot
Match: L8GQ19_ACACA (WD repeatcontaining protein 69, putative n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8GQ19_ACACA) HSP 1 Score: 81.3 bits (199), Expect = 3.440e-13 Identity = 72/253 (28.46%), Postives = 105/253 (41.50%), Query Frame = 1
Query: 946 AGGDQRFKASAVFLGHTEQVLALARHKD--ILFSAAVDGTAKAWDTYSQHCLATYEGHRKAVWGMQVSNRTLITGSADCTVRFWDIETAQSLHVVDLRSSVRDVVIVGDFLAVATSNPGVEVIDLHHMKRRGRLEGHLLAVSAVAAIEGEGLLVTGSHDTFLRQVFYLCPHVQTVWDPFSGNCEAVLGGHGGTVGALCTMSRPPPVQANRKTLMNEGALIVSGSGDSTVRVWGRAGVVGELREWACRAVLEGH 1698
AG DQ +A V H E V + H+ FS + DGTAK WDT SQ + + + H V +Q ++R LITGS D TV+ W+++ + VG ++ N V + L V+++A G+ LL +G + L VWD +G A L GHGG V A VQA+ I++G D TV++W + R W C ++ H
Sbjct: 15 AGADQ-TRAVWVMKDHQEPVAGVHMHRSGTYFFSCSFDGTAKVWDTGSQRVVGSTKVHLDIVSAIQATDRHLITGSWDRTVKVWELQGTR----------------VGRCTSILKHNGKVNCLGSAASLLATGASDRLSEVNSLAFWRGDELLCSGGNRETL------------VWDLATGTSVATLPGHGGEVNA---------VQADESR-------IITGGWDKTVKLW-------DPRSWLCEHTVKAH 215
BLAST of mRNA_P-littoralis_Contig143.17.1 vs. uniprot
Match: A0A6P4LXL8_GOSAR (Eukaryotic translation initiation factor 3 subunit I n=16 Tax=Gossypium TaxID=3633 RepID=A0A6P4LXL8_GOSAR) HSP 1 Score: 80.1 bits (196), Expect = 1.380e-12 Identity = 65/219 (29.68%), Postives = 98/219 (44.75%), Query Frame = 1
Query: 1018 RHKDILFSAAVDGTAKAWDTYSQHCLATYEGHRKAVWGMQVSNRT--LITGSADCTVRFWDIETAQSLHVVDLRSSVRDVVI-VGDFLAVATSNPGVEVIDLHHMKRRGRLEGHLLAVSAVAAIEGEGLLVTGSHDTFLRQVFYLCPHVQTVWDPF-----SGNCEAVLGGHGGTVGALCTMSRPPPVQANRKTLMN-----EGALIVSGSGDSTVRVW 1635
R D+LFS A D T W + L TY GH AVW VS + LITGSAD TV+ W+++T L+ + S R V VGD LAV T++P +E+ H+KR +A E L++ G R VW P S +A++ G L + ++KT+ + +G+ +++GS D + ++W
Sbjct: 20 RDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWSCDVSRDSMRLITGSADQTVKLWNVQTGSQLYTFNFGSPARSVDFSVGDKLAVITTDPFMELTSAIHVKR--------IARDPAEQTEESELVIKGPQGRINR----------AVWGPLNRTIISAGEDAIIRIWDSETGKL--LREADKESGHKKTITSLTKSADGSHLLTGSLDKSAKLW 218
BLAST of mRNA_P-littoralis_Contig143.17.1 vs. uniprot
Match: A0A443P1B3_9MAGN (Eukaryotic translation initiation factor 3 subunit I-like protein n=1 Tax=Cinnamomum micranthum f. kanehirae TaxID=337451 RepID=A0A443P1B3_9MAGN) HSP 1 Score: 75.5 bits (184), Expect = 1.410e-12 Identity = 48/122 (39.34%), Postives = 65/122 (53.28%), Query Frame = 1
Query: 988 GHTEQVLALARHK--DILFSAAVDGTAKAWDTYSQHCLATYEGHRKAVWGMQVSNRT--LITGSADCTVRFWDIETAQSLHVVDLRSSVRDVVI-VGDFLAVATSNPGVEVIDLHHMKRRGR 1338
GH + L +K D+LFS A D T AW + L TY+GH AVW VS + LITGSAD +V+ W+++T L+ S R V +GD L V T++P +E H+KR R
Sbjct: 8 GHERPLTFLKYNKEGDLLFSCAKDHTPNAWFADNGERLGTYKGHNGAVWCCDVSRDSMRLITGSADQSVKLWNVQTGAQLYTFSFASPARSVDFSIGDQLTVITTDPFMEQTAAIHVKRIAR 129
BLAST of mRNA_P-littoralis_Contig143.17.1 vs. uniprot
Match: D8SYB1_SELML (Eukaryotic translation initiation factor 3 subunit I n=1 Tax=Selaginella moellendorffii TaxID=88036 RepID=D8SYB1_SELML) HSP 1 Score: 79.7 bits (195), Expect = 1.790e-12 Identity = 63/222 (28.38%), Postives = 95/222 (42.79%), Query Frame = 1
Query: 1018 RHKDILFSAAVDGTAKAWDTYSQHCLATYEGHRKAVWGMQVSNRT--LITGSADCTVRFWDIETAQSLHVVDLRSSVRDVVIV-GDFLAVATSNPGVEVIDLHHMKRRGRLEGHLLAVSAVAAIEG-------------EGLLVTGSHDTFLRQVFYLCPHVQTVWDPFSGNCEAVLGGHGGTVGALCTMSRPPPVQANRKTLMNEGALIVSGSGDSTVRVW 1635
R D+LFS A D W ++ L TY GH AVW VS + LITGSAD +V+ WD+ET LH + S R V GD LAV +++P +E + H+K +E L ++ G +++ DT +R +WD +G G A+ ++S L +G+ ++GS D T ++W
Sbjct: 20 RDGDLLFSCAKDHNPTVWYGHNGERLGTYRGHNGAVWCCDVSRHSTRLITGSADQSVKLWDVETGTQLHTFNFVSPARAVDFAEGDKLAVISTDPFMESVSAIHIKS---VESSGLQQGSIKTFTGPTGRINRVVWGPLNKTIISAGEDTVIR-----------IWDVETGEVIKKTDKENGHSRAITSLS-----------LSADGSHFITGSQDKTAKLW 216
BLAST of mRNA_P-littoralis_Contig143.17.1 vs. uniprot
Match: A0A0D2QDE2_GOSRA (Uncharacterized protein n=1 Tax=Gossypium raimondii TaxID=29730 RepID=A0A0D2QDE2_GOSRA) HSP 1 Score: 79.3 bits (194), Expect = 2.270e-12 Identity = 66/219 (30.14%), Postives = 97/219 (44.29%), Query Frame = 1
Query: 1018 RHKDILFSAAVDGTAKAWDTYSQHCLATYEGHRKAVWGMQVSNRT--LITGSADCTVRFWDIETAQSLHVVDLRSSVRDVVI-VGDFLAVATSNPGVEVIDLHHMKRRGRLEGHLLAVSAVAAIEGEGLLVTGSHDTFLRQVFYLCPHVQTVWDPF-----SGNCEAVLGGHGGTVGALCTMSRPPPVQANRKTLMN-----EGALIVSGSGDSTVRVW 1635
R D+LFS A D T W + L TY GH AVW VS + LITGSAD TV+ W+++T L+ + S R V VGD LAV T++P +E+ H+KR +A E L++ G R VW P S +AV+ G L + ++KT+ + +G+ ++GS D + ++W
Sbjct: 20 RDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWSCDVSRDSMRLITGSADQTVKLWNVQTGAQLYTFNFGSPARSVDFSVGDKLAVITTDPFMELTSAIHVKR--------IARDPTEQTEESELVIKGPQGRINR----------AVWGPLNRTIVSAGEDAVIRIWDSETGKL--LREADKESGHKKTITSLTKSADGSHFLTGSLDKSAKLW 218
BLAST of mRNA_P-littoralis_Contig143.17.1 vs. uniprot
Match: A0A7J9GH50_9ROSI (Uncharacterized protein (Fragment) n=1 Tax=Gossypium harknessii TaxID=34285 RepID=A0A7J9GH50_9ROSI) HSP 1 Score: 78.6 bits (192), Expect = 2.860e-12 Identity = 66/219 (30.14%), Postives = 97/219 (44.29%), Query Frame = 1
Query: 1018 RHKDILFSAAVDGTAKAWDTYSQHCLATYEGHRKAVWGMQVSNRT--LITGSADCTVRFWDIETAQSLHVVDLRSSVRDVVI-VGDFLAVATSNPGVEVIDLHHMKRRGRLEGHLLAVSAVAAIEGEGLLVTGSHDTFLRQVFYLCPHVQTVWDPF-----SGNCEAVLGGHGGTVGALCTMSRPPPVQANRKTLMN-----EGALIVSGSGDSTVRVW 1635
R D+LFS A D T W + L TY GH AVW VS + LITGSAD TV+ W+++ L+ + S R V +GD LAV T++P +E+ H+KR +A + E L+V G R VW P S +AV+ G L + ++KT+ + +G+ +SGS D + ++W
Sbjct: 9 RDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWTCDVSRDSMRLITGSADQTVKLWNVQKGTQLYTFNFGSPARSVEFAIGDKLAVITTDPFMELTSAIHVKR--------IAGDSTEQTEESVLVVKGPQGRINR----------AVWGPLNRTIISAGEDAVIRIWDSETGKL--LKESDKESGHKKTITSLTKAADGSHFLSGSLDKSAKLW 207
BLAST of mRNA_P-littoralis_Contig143.17.1 vs. uniprot
Match: A0A2G5CEJ7_AQUCA (Eukaryotic translation initiation factor 3 subunit I n=4 Tax=Thalictroideae TaxID=1463137 RepID=A0A2G5CEJ7_AQUCA) HSP 1 Score: 78.6 bits (192), Expect = 4.490e-12 Identity = 62/210 (29.52%), Postives = 94/210 (44.76%), Query Frame = 1
Query: 1018 RHKDILFSAAVDGTAKAWDTYSQHCLATYEGHRKAVWGMQVSNRT--LITGSADCTVRFWDIETAQSLHVVDLRSSVRDVVI-VGDFLAVATSNPGVEVIDLHHMKRRGRLEGHLLAVSAVAAIEGEGLLVTGSHDTFLRQVFYLCPH-VQTVWDPFSGNCEAVLGGHGGTVGALCTMSRPPPVQANRKTLMNEGALIVSGSGDSTVRVW 1635
R D+LFS A D T W + L TY GH AVW VS + LITGSAD +V+ WD++T L + S R V VGD LAV T++P +E+ H+KR + A S + G + + + + V +WD +G G A+ ++S+ +G+ ++GS D++ R+W
Sbjct: 20 REGDLLFSCAKDHTPNVWFADNGERLGTYRGHNGAVWCCDVSRNSTRLITGSADQSVKLWDVQTGTQLFSFNFESPARSVEFGVGDELAVITTDPFMELTSAIHVKRISKDPNEQTAKSLLEIKGPRGRINRAVWGPLNKTIISVGEDAVVRLWDSETGKLLKESEKETGHRDAITSLSKSA-----------DGSHFLTGSLDNSARLW 218 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig143.17.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig143.17.1 >prot_P-littoralis_Contig143.17.1 ID=prot_P-littoralis_Contig143.17.1|Name=mRNA_P-littoralis_Contig143.17.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=673bp AIVNDTPPSSKSPNPYKRRGLLPRRSPPPLQQKFDVDDCSSSKGTTGGLRback to top mRNA from alignment at P-littoralis_Contig143:95983..99660- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig143.17.1 ID=mRNA_P-littoralis_Contig143.17.1|Name=mRNA_P-littoralis_Contig143.17.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=3678bp|location=Sequence derived from alignment at P-littoralis_Contig143:95983..99660- (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig143:95983..99660- >mRNA_P-littoralis_Contig143.17.1 ID=mRNA_P-littoralis_Contig143.17.1|Name=mRNA_P-littoralis_Contig143.17.1|organism=Pylaiella littoralis U1_48|type=CDS|length=2019bp|location=Sequence derived from alignment at P-littoralis_Contig143:95983..99660- (Pylaiella littoralis U1_48)back to top |