mRNA_P-littoralis_Contig143.17.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig143.17.1
Unique NamemRNA_P-littoralis_Contig143.17.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig143.17.1 vs. uniprot
Match: D8LC03_ECTSI (HET-R n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LC03_ECTSI)

HSP 1 Score: 495 bits (1274), Expect = 1.700e-163
Identity = 341/715 (47.69%), Postives = 411/715 (57.48%), Query Frame = 1
Query:    1 AIVNDTPPSSKSPNPYKRRGLLPRRSPPPLQQKFDVDDCSSSKGTTGGLRPAPPTSPPGIYF-DGRGSPILLDSSCRDSRASSGSASPHIRLWYPADPRPSSGGNGEVNDGGGDESAYVVHPTFRRMFDDRV-------------------------GGIGGGGSQRASSRRP-----THGAVGLSRSQPAETAAVSKPSERGRKTGPATRGGGREGTNAYFSVEQTDTSGKQRRSAPTTGPHRVVDGRRSLSTQDGG--APSPPTKSTARVGPNLKAFPGACSNNLNTRP-----QRAHAGRGEVERQKPSREPSAETAATVRGRVRDLQISPGRPRRRESPGRLSTRDNCTAGGDQRFKASAVFLGHTEQVLALARHKDILFSAAVDGTAKAWDTYSQHCLATYEGHRKAVWGMQVSNRTLITGSADCTVRFWDIETAQSLHVVDLRSSVRDVVIVGDFLAVATSNPGVEVIDLHHMKRRGRLEGHLLAVSAVAAIEGEGLLVTGSHDTFLRQVFYLCPHVQTVWDPFSGNCEAVLGGHGGTVGALCTMSRPPPVQANRKTLMNEGALIVSGSGDSTVRVWGRAGVVGE-LREWACRAVLEGHRHGVWAVHGSSTSGVFATXXXXXXXXXXXXXXXT----GNVSGDNVMLGGGQIVSEEHDQRQHHRWECVGGVRGAAGAVGAVLVNEEALVFGTSEALIARFPLKSCMPTR 2016
            A  N++   S SPNPYKRRGLL R  P P Q+KFD+D  SSS G    +RP   TSP       G GSP     S   +  S+   SP  R WYPA  RPSS  NGE    G D+SAYVVHP+FR +F +R                          GG+ GG +   S RRP     + G    S S   +   V++ SER  +  PAT G  R     +FS  +     +QRR   TTG     D   + S Q GG  A   PT   +  G    A P    +N +  P     QR + GR  VE++        +T A +RGRVRD+Q    RPRR+E  GR+   D+    GD + ++SAVF+GH+EQVLALAR +DILFSA+ DGTAKAWDT SQ CLATY+GH  AVWGMQV+ R                ETAQSL V+DLRS+VRDVV+VGDFLAVATSNPG+E+++L  M+R G LEGHLLAVSA+A++EGE LLV+GSHDTF+R           VWDP +   +AVLGGHGGTVGA+CT+S P     + K    E ALIVSGSGD T RVWG+ GV  +  REW CRAVLEGHRHGVWAV+GSS SG FAT                    GN   +   LG G+  S          WE VGGVRG AGAVGAVL++E+ALVFGTSEALIARFPL+ CMP R
Sbjct:   27 AAANNSSDCSTSPNPYKRRGLLRRIDPQP-QRKFDIDRNSSSTG----VRPPSLTSPTSTSVAPGGGSPSWNSLSAPGTPRSN---SPSKRPWYPASRRPSSRDNGES---GADDSAYVVHPSFRHLFTERAHSSSANDPSRSRQVYSQGPHHGASGGGVSGGEN---SGRRPGTAVFSVGGWDPSYSSSTKETTVARRSERPGEVEPATAGRWR---GVHFSKAKHSPPEQQRRDT-TTGIGSAPD---ASSRQRGGERASFSPTDRWSGFGSKSDASPARLRSNDHRSPREMGGQRPYVGRETVEQEGAP----LKTVAAMRGRVRDMQAR-RRPRRQERGGRMPPADSRRGEGDPKLRSSAVFIGHSEQVLALARCEDILFSASADGTAKAWDTCSQQCLATYKGHHGAVWGMQVTGRXXXXXXXXXXXXXXXXETAQSLSVLDLRSAVRDVVMVGDFLAVATSNPGIEIVELKRMRRHGTLEGHLLAVSALASLEGENLLVSGSHDTFIR-----------VWDPDTLTSKAVLGGHGGTVGAICTVSWPQGGHDHAKRAAEE-ALIVSGSGDGTARVWGQQGVGDKGQREWTCRAVLEGHRHGVWAVYGSSLSGAFATGGGDATVKLWAPTTTNNAEHGNEEAERGNLGSGE--SRHQXXXXXXXWELVGGVRGTAGAVGAVLIDEQALVFGTSEALIARFPLQLCMPAR 701          
BLAST of mRNA_P-littoralis_Contig143.17.1 vs. uniprot
Match: A0A6H5JEV4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEV4_9PHAE)

HSP 1 Score: 160 bits (405), Expect = 1.970e-39
Identity = 157/420 (37.38%), Postives = 206/420 (49.05%), Query Frame = 1
Query:    1 AIVNDTPPSSKSPNPYKRRGLLPRRSPPPLQQKFDVDDCSSSKGTTGGLRPAPPTSPPGIYF-DGRGSPILLDSSCRDSRASSGSASPHIRLWYPADPRPSSGGNGEVNDGGGDESAYVVHPTFRRMFDDRVGGIG---------------------GGGSQRASS-RRPTHGAVGLSRSQPAETAA-----VSKPSERGRKTGPATRGGGREGTNAYFSVEQTDTSGKQRRSAPTTGPHRVVDGRRSLSTQDGG--APSPPTKSTARVGPNLKAFPGACSNNLNTRP-----QRAHAGRGEVERQKPSREPSAETAATVRGRVRDLQISPGRPRRRESPGRLSTRDNCTAGGDQRFKASAVFLGHTEQVLALARHKDILFSAAVDGTAK----AWDTY------SQHCLATYEGHRKAV 1125
            A  ND+P  S S NPYKRRGLL RR P P Q+KFD+D  SSS G    +RP   TSP       G  SP     S   +  S+   SP+ R WYPA  RPSS  +GE    G D+SAYVVHP+FR +F +     G                     GGGS   +S RRP      +    P+ +++     V++ SER  +  PA  G  R    A+FS  + +   +Q R+  TTG     D   + S Q GG  A   PT  ++  G    A P     N +  P     QR +A R  VE+     EP     A +R RVRD+Q   GRPRR+E  GR+   D+    GD R ++S VF+GH++QVLALAR +DILFSA+ DGTAK    +W  +      S +   +  GH  A+
Sbjct:   27 AAANDSPDCSMSSNPYKRRGLLRRRDPQP-QRKFDIDRNSSSAG----VRPPLLTSPVSTSVAPGGESPSWNSLSVPGTPRSN---SPNKRPWYPAGRRPSSRDSGES---GADDSAYVVHPSFRHLFTESAHSSGANDPSRSRQVYSQGPHHGSSRGGGSXXENSGRRPGTAVFSVGGGDPSYSSSTTETTVARQSERSGEVEPAAAGRWR---GAHFSKAEHNPREQQHRNTTTTGIGSAPD---ASSRQRGGERASFSPTGRSSVFGSESDASPPRPRRNDHRSPREMGGQRPYAERETVEQGGAPLEP----VAAMRSRVRDMQAR-GRPRRKERGGRMPPADSRRGEGDPRLRSS-VFIGHSKQVLALARREDILFSASADGTAKVNQPSWSPFVASIGRSSNLCISLSGHEGAM 423          
BLAST of mRNA_P-littoralis_Contig143.17.1 vs. uniprot
Match: A0A7J9A7E3_9ROSI (Uncharacterized protein n=1 Tax=Gossypium laxum TaxID=34288 RepID=A0A7J9A7E3_9ROSI)

HSP 1 Score: 79.0 bits (193), Expect = 2.530e-13
Identity = 47/110 (42.73%), Postives = 61/110 (55.45%), Query Frame = 1
Query: 1018 RHKDILFSAAVDGTAKAWDTYSQHCLATYEGHRKAVWGMQVSNRT--LITGSADCTVRFWDIETAQSLHVVDLRSSVRDVVI-VGDFLAVATSNPGVEVIDLHHMKRRGR 1338
            R  D+LFS A D T   W   +   L TY GH  AVW   VS  +  LITGSAD TV+ W+++T   L+  +  S  R V   VGD LAV T++P +E+    H+KR  R
Sbjct:   20 RDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWSCDVSRDSTRLITGSADQTVKLWNVQTGAQLYTFNFGSPARSVDFSVGDKLAVITTDPFMELTSAIHVKRIAR 129          
BLAST of mRNA_P-littoralis_Contig143.17.1 vs. uniprot
Match: L8GQ19_ACACA (WD repeatcontaining protein 69, putative n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8GQ19_ACACA)

HSP 1 Score: 81.3 bits (199), Expect = 3.440e-13
Identity = 72/253 (28.46%), Postives = 105/253 (41.50%), Query Frame = 1
Query:  946 AGGDQRFKASAVFLGHTEQVLALARHKD--ILFSAAVDGTAKAWDTYSQHCLATYEGHRKAVWGMQVSNRTLITGSADCTVRFWDIETAQSLHVVDLRSSVRDVVIVGDFLAVATSNPGVEVIDLHHMKRRGRLEGHLLAVSAVAAIEGEGLLVTGSHDTFLRQVFYLCPHVQTVWDPFSGNCEAVLGGHGGTVGALCTMSRPPPVQANRKTLMNEGALIVSGSGDSTVRVWGRAGVVGELREWACRAVLEGH 1698
            AG DQ  +A  V   H E V  +  H+     FS + DGTAK WDT SQ  + + + H   V  +Q ++R LITGS D TV+ W+++  +                VG   ++   N  V  +              L  V+++A   G+ LL +G +   L            VWD  +G   A L GHGG V A         VQA+          I++G  D TV++W       + R W C   ++ H
Sbjct:   15 AGADQ-TRAVWVMKDHQEPVAGVHMHRSGTYFFSCSFDGTAKVWDTGSQRVVGSTKVHLDIVSAIQATDRHLITGSWDRTVKVWELQGTR----------------VGRCTSILKHNGKVNCLGSAASLLATGASDRLSEVNSLAFWRGDELLCSGGNRETL------------VWDLATGTSVATLPGHGGEVNA---------VQADESR-------IITGGWDKTVKLW-------DPRSWLCEHTVKAH 215          
BLAST of mRNA_P-littoralis_Contig143.17.1 vs. uniprot
Match: A0A6P4LXL8_GOSAR (Eukaryotic translation initiation factor 3 subunit I n=16 Tax=Gossypium TaxID=3633 RepID=A0A6P4LXL8_GOSAR)

HSP 1 Score: 80.1 bits (196), Expect = 1.380e-12
Identity = 65/219 (29.68%), Postives = 98/219 (44.75%), Query Frame = 1
Query: 1018 RHKDILFSAAVDGTAKAWDTYSQHCLATYEGHRKAVWGMQVSNRT--LITGSADCTVRFWDIETAQSLHVVDLRSSVRDVVI-VGDFLAVATSNPGVEVIDLHHMKRRGRLEGHLLAVSAVAAIEGEGLLVTGSHDTFLRQVFYLCPHVQTVWDPF-----SGNCEAVLGGHGGTVGALCTMSRPPPVQANRKTLMN-----EGALIVSGSGDSTVRVW 1635
            R  D+LFS A D T   W   +   L TY GH  AVW   VS  +  LITGSAD TV+ W+++T   L+  +  S  R V   VGD LAV T++P +E+    H+KR        +A       E   L++ G      R           VW P      S   +A++       G L  +        ++KT+ +     +G+ +++GS D + ++W
Sbjct:   20 RDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWSCDVSRDSMRLITGSADQTVKLWNVQTGSQLYTFNFGSPARSVDFSVGDKLAVITTDPFMELTSAIHVKR--------IARDPAEQTEESELVIKGPQGRINR----------AVWGPLNRTIISAGEDAIIRIWDSETGKL--LREADKESGHKKTITSLTKSADGSHLLTGSLDKSAKLW 218          
BLAST of mRNA_P-littoralis_Contig143.17.1 vs. uniprot
Match: A0A443P1B3_9MAGN (Eukaryotic translation initiation factor 3 subunit I-like protein n=1 Tax=Cinnamomum micranthum f. kanehirae TaxID=337451 RepID=A0A443P1B3_9MAGN)

HSP 1 Score: 75.5 bits (184), Expect = 1.410e-12
Identity = 48/122 (39.34%), Postives = 65/122 (53.28%), Query Frame = 1
Query:  988 GHTEQVLALARHK--DILFSAAVDGTAKAWDTYSQHCLATYEGHRKAVWGMQVSNRT--LITGSADCTVRFWDIETAQSLHVVDLRSSVRDVVI-VGDFLAVATSNPGVEVIDLHHMKRRGR 1338
            GH   +  L  +K  D+LFS A D T  AW   +   L TY+GH  AVW   VS  +  LITGSAD +V+ W+++T   L+     S  R V   +GD L V T++P +E     H+KR  R
Sbjct:    8 GHERPLTFLKYNKEGDLLFSCAKDHTPNAWFADNGERLGTYKGHNGAVWCCDVSRDSMRLITGSADQSVKLWNVQTGAQLYTFSFASPARSVDFSIGDQLTVITTDPFMEQTAAIHVKRIAR 129          
BLAST of mRNA_P-littoralis_Contig143.17.1 vs. uniprot
Match: D8SYB1_SELML (Eukaryotic translation initiation factor 3 subunit I n=1 Tax=Selaginella moellendorffii TaxID=88036 RepID=D8SYB1_SELML)

HSP 1 Score: 79.7 bits (195), Expect = 1.790e-12
Identity = 63/222 (28.38%), Postives = 95/222 (42.79%), Query Frame = 1
Query: 1018 RHKDILFSAAVDGTAKAWDTYSQHCLATYEGHRKAVWGMQVSNRT--LITGSADCTVRFWDIETAQSLHVVDLRSSVRDVVIV-GDFLAVATSNPGVEVIDLHHMKRRGRLEGHLLAVSAVAAIEG-------------EGLLVTGSHDTFLRQVFYLCPHVQTVWDPFSGNCEAVLGGHGGTVGALCTMSRPPPVQANRKTLMNEGALIVSGSGDSTVRVW 1635
            R  D+LFS A D     W  ++   L TY GH  AVW   VS  +  LITGSAD +V+ WD+ET   LH  +  S  R V    GD LAV +++P +E +   H+K    +E   L   ++    G                +++   DT +R           +WD  +G          G   A+ ++S           L  +G+  ++GS D T ++W
Sbjct:   20 RDGDLLFSCAKDHNPTVWYGHNGERLGTYRGHNGAVWCCDVSRHSTRLITGSADQSVKLWDVETGTQLHTFNFVSPARAVDFAEGDKLAVISTDPFMESVSAIHIKS---VESSGLQQGSIKTFTGPTGRINRVVWGPLNKTIISAGEDTVIR-----------IWDVETGEVIKKTDKENGHSRAITSLS-----------LSADGSHFITGSQDKTAKLW 216          
BLAST of mRNA_P-littoralis_Contig143.17.1 vs. uniprot
Match: A0A0D2QDE2_GOSRA (Uncharacterized protein n=1 Tax=Gossypium raimondii TaxID=29730 RepID=A0A0D2QDE2_GOSRA)

HSP 1 Score: 79.3 bits (194), Expect = 2.270e-12
Identity = 66/219 (30.14%), Postives = 97/219 (44.29%), Query Frame = 1
Query: 1018 RHKDILFSAAVDGTAKAWDTYSQHCLATYEGHRKAVWGMQVSNRT--LITGSADCTVRFWDIETAQSLHVVDLRSSVRDVVI-VGDFLAVATSNPGVEVIDLHHMKRRGRLEGHLLAVSAVAAIEGEGLLVTGSHDTFLRQVFYLCPHVQTVWDPF-----SGNCEAVLGGHGGTVGALCTMSRPPPVQANRKTLMN-----EGALIVSGSGDSTVRVW 1635
            R  D+LFS A D T   W   +   L TY GH  AVW   VS  +  LITGSAD TV+ W+++T   L+  +  S  R V   VGD LAV T++P +E+    H+KR        +A       E   L++ G      R           VW P      S   +AV+       G L  +        ++KT+ +     +G+  ++GS D + ++W
Sbjct:   20 RDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWSCDVSRDSMRLITGSADQTVKLWNVQTGAQLYTFNFGSPARSVDFSVGDKLAVITTDPFMELTSAIHVKR--------IARDPTEQTEESELVIKGPQGRINR----------AVWGPLNRTIVSAGEDAVIRIWDSETGKL--LREADKESGHKKTITSLTKSADGSHFLTGSLDKSAKLW 218          
BLAST of mRNA_P-littoralis_Contig143.17.1 vs. uniprot
Match: A0A7J9GH50_9ROSI (Uncharacterized protein (Fragment) n=1 Tax=Gossypium harknessii TaxID=34285 RepID=A0A7J9GH50_9ROSI)

HSP 1 Score: 78.6 bits (192), Expect = 2.860e-12
Identity = 66/219 (30.14%), Postives = 97/219 (44.29%), Query Frame = 1
Query: 1018 RHKDILFSAAVDGTAKAWDTYSQHCLATYEGHRKAVWGMQVSNRT--LITGSADCTVRFWDIETAQSLHVVDLRSSVRDVVI-VGDFLAVATSNPGVEVIDLHHMKRRGRLEGHLLAVSAVAAIEGEGLLVTGSHDTFLRQVFYLCPHVQTVWDPF-----SGNCEAVLGGHGGTVGALCTMSRPPPVQANRKTLMN-----EGALIVSGSGDSTVRVW 1635
            R  D+LFS A D T   W   +   L TY GH  AVW   VS  +  LITGSAD TV+ W+++    L+  +  S  R V   +GD LAV T++P +E+    H+KR        +A  +    E   L+V G      R           VW P      S   +AV+       G L  +        ++KT+ +     +G+  +SGS D + ++W
Sbjct:    9 RDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWTCDVSRDSMRLITGSADQTVKLWNVQKGTQLYTFNFGSPARSVEFAIGDKLAVITTDPFMELTSAIHVKR--------IAGDSTEQTEESVLVVKGPQGRINR----------AVWGPLNRTIISAGEDAVIRIWDSETGKL--LKESDKESGHKKTITSLTKAADGSHFLSGSLDKSAKLW 207          
BLAST of mRNA_P-littoralis_Contig143.17.1 vs. uniprot
Match: A0A2G5CEJ7_AQUCA (Eukaryotic translation initiation factor 3 subunit I n=4 Tax=Thalictroideae TaxID=1463137 RepID=A0A2G5CEJ7_AQUCA)

HSP 1 Score: 78.6 bits (192), Expect = 4.490e-12
Identity = 62/210 (29.52%), Postives = 94/210 (44.76%), Query Frame = 1
Query: 1018 RHKDILFSAAVDGTAKAWDTYSQHCLATYEGHRKAVWGMQVSNRT--LITGSADCTVRFWDIETAQSLHVVDLRSSVRDVVI-VGDFLAVATSNPGVEVIDLHHMKRRGRLEGHLLAVSAVAAIEGEGLLVTGSHDTFLRQVFYLCPH-VQTVWDPFSGNCEAVLGGHGGTVGALCTMSRPPPVQANRKTLMNEGALIVSGSGDSTVRVW 1635
            R  D+LFS A D T   W   +   L TY GH  AVW   VS  +  LITGSAD +V+ WD++T   L   +  S  R V   VGD LAV T++P +E+    H+KR  +      A S +      G +         + +  +    V  +WD  +G          G   A+ ++S+             +G+  ++GS D++ R+W
Sbjct:   20 REGDLLFSCAKDHTPNVWFADNGERLGTYRGHNGAVWCCDVSRNSTRLITGSADQSVKLWDVQTGTQLFSFNFESPARSVEFGVGDELAVITTDPFMELTSAIHVKRISKDPNEQTAKSLLEIKGPRGRINRAVWGPLNKTIISVGEDAVVRLWDSETGKLLKESEKETGHRDAITSLSKSA-----------DGSHFLTGSLDNSARLW 218          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig143.17.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LC03_ECTSI1.700e-16347.69HET-R n=1 Tax=Ectocarpus siliculosus TaxID=2880 Re... [more]
A0A6H5JEV4_9PHAE1.970e-3937.38Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7J9A7E3_9ROSI2.530e-1342.73Uncharacterized protein n=1 Tax=Gossypium laxum Ta... [more]
L8GQ19_ACACA3.440e-1328.46WD repeatcontaining protein 69, putative n=1 Tax=A... [more]
A0A6P4LXL8_GOSAR1.380e-1229.68Eukaryotic translation initiation factor 3 subunit... [more]
A0A443P1B3_9MAGN1.410e-1239.34Eukaryotic translation initiation factor 3 subunit... [more]
D8SYB1_SELML1.790e-1228.38Eukaryotic translation initiation factor 3 subunit... [more]
A0A0D2QDE2_GOSRA2.270e-1230.14Uncharacterized protein n=1 Tax=Gossypium raimondi... [more]
A0A7J9GH50_9ROSI2.860e-1230.14Uncharacterized protein (Fragment) n=1 Tax=Gossypi... [more]
A0A2G5CEJ7_AQUCA4.490e-1229.52Eukaryotic translation initiation factor 3 subunit... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig143contigP-littoralis_Contig143:95983..99660 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog2880.D8LC03
PFAMsF-box-like,HET,NACHT,WD40
Model size2019
Max annot lvl2759|Eukaryota
KEGG koko:K03361,ko:K22071
KEGG Pathwayko04111,ko04120,map04111,map04120
KEGG ModuleM00407
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000151,GO:0000746,GO:0000747,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0006508,GO:0006511,GO:0006807,GO:0007346,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009987,GO:0010498,GO:0019005,GO:0019538,GO:0019941,GO:0019953,GO:0022414,GO:0030163,GO:0030674,GO:0031145,GO:0031461,GO:0032991,GO:0043161,GO:0043170,GO:0043632,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044424,GO:0044464,GO:0044703,GO:0044764,GO:0050789,GO:0050794,GO:0051603,GO:0051704,GO:0051726,GO:0060090,GO:0065007,GO:0071704,GO:1901564,GO:1901565,GO:1901575,GO:1902494,GO:1990234
Exons6
Evalue2.79e-164
EggNOG OGsKOG0274@1|root,KOG0274@2759|Eukaryota
Ec32 ortholog descriptionWD40 repeat
Ec32 orthologEc-20_003950.1
DescriptionSCF-dependent proteasomal ubiquitin-dependent protein catabolic process
Cds size2019
COG categoryM
BRITEko00000,ko00001,ko00002,ko03029,ko04121
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig143.17.1prot_P-littoralis_Contig143.17.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig143 95983..99660 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789671.6041198-CDS-P-littoralis_Contig143:95982..963011680789671.6041198-CDS-P-littoralis_Contig143:95982..96301Pylaiella littoralis U1_48CDSP-littoralis_Contig143 95983..96301 -
1680789671.617027-CDS-P-littoralis_Contig143:96785..970251680789671.617027-CDS-P-littoralis_Contig143:96785..97025Pylaiella littoralis U1_48CDSP-littoralis_Contig143 96786..97025 -
1680789671.6282961-CDS-P-littoralis_Contig143:97502..977321680789671.6282961-CDS-P-littoralis_Contig143:97502..97732Pylaiella littoralis U1_48CDSP-littoralis_Contig143 97503..97732 -
1680789671.6371925-CDS-P-littoralis_Contig143:98144..983091680789671.6371925-CDS-P-littoralis_Contig143:98144..98309Pylaiella littoralis U1_48CDSP-littoralis_Contig143 98145..98309 -
1680789671.6459923-CDS-P-littoralis_Contig143:98502..993741680789671.6459923-CDS-P-littoralis_Contig143:98502..99374Pylaiella littoralis U1_48CDSP-littoralis_Contig143 98503..99374 -
1680789671.6545494-CDS-P-littoralis_Contig143:99467..996601680789671.6545494-CDS-P-littoralis_Contig143:99467..99660Pylaiella littoralis U1_48CDSP-littoralis_Contig143 99468..99660 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig143.17.1

>prot_P-littoralis_Contig143.17.1 ID=prot_P-littoralis_Contig143.17.1|Name=mRNA_P-littoralis_Contig143.17.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=673bp
AIVNDTPPSSKSPNPYKRRGLLPRRSPPPLQQKFDVDDCSSSKGTTGGLR
PAPPTSPPGIYFDGRGSPILLDSSCRDSRASSGSASPHIRLWYPADPRPS
SGGNGEVNDGGGDESAYVVHPTFRRMFDDRVGGIGGGGSQRASSRRPTHG
AVGLSRSQPAETAAVSKPSERGRKTGPATRGGGREGTNAYFSVEQTDTSG
KQRRSAPTTGPHRVVDGRRSLSTQDGGAPSPPTKSTARVGPNLKAFPGAC
SNNLNTRPQRAHAGRGEVERQKPSREPSAETAATVRGRVRDLQISPGRPR
RRESPGRLSTRDNCTAGGDQRFKASAVFLGHTEQVLALARHKDILFSAAV
DGTAKAWDTYSQHCLATYEGHRKAVWGMQVSNRTLITGSADCTVRFWDIE
TAQSLHVVDLRSSVRDVVIVGDFLAVATSNPGVEVIDLHHMKRRGRLEGH
LLAVSAVAAIEGEGLLVTGSHDTFLRQVFYLCPHVQTVWDPFSGNCEAVL
GGHGGTVGALCTMSRPPPVQANRKTLMNEGALIVSGSGDSTVRVWGRAGV
VGELREWACRAVLEGHRHGVWAVHGSSTSGVFATGGGDATVKIWAPRAVT
GNVSGDNVMLGGGQIVSEEHDQRQHHRWECVGGVRGAAGAVGAVLVNEEA
LVFGTSEALIARFPLKSCMPTR*
back to top

mRNA from alignment at P-littoralis_Contig143:95983..99660-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig143.17.1 ID=mRNA_P-littoralis_Contig143.17.1|Name=mRNA_P-littoralis_Contig143.17.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=3678bp|location=Sequence derived from alignment at P-littoralis_Contig143:95983..99660- (Pylaiella littoralis U1_48)
GCTATTGTCAACGATACCCCACCTTCATCAAAGTCGCCAAACCCTTACAA ACGAAGAGGGTTGCTTCCGCGAAGGAGCCCGCCACCGCTCCAGCAAAAGT TCGACGTCGACGATTGTTCTAGCAGCAAAGGTACCACCGGAGGATTGCGA CCCGCGCCGCCGACGAGCCCACCCGGAATTTACTTCGACGGCAGTACTGG TACCGACGTGAAAAACGCACCAACAACAGGCGGTGGTGGCAACACTTACA GTGCGACTCCTGCAGGAGGACCGCCGACTCTTGCAGGAGGTTCGCCGATA CTGTTGGACTCTTCTTGCCGCGACAGCCGGGCATCTTCCGGAAGCGCTTC TCCGCACATCCGGCTGTGGTACCCGGCGGACCCCCGCCCTTCTTCTGGCG GAAATGGTGAAGTAAATGATGGCGGTGGCGACGAAAGCGCGTACGTCGTG CACCCCACCTTTCGACGCATGTTCGACGACAGGGTCGGCGGCATCGGCGG TGGCGGCAGTCAAAGAGCATCATCACGTCGACCAACGCATGGTGCGGTTG GATTATCGCGCTCGCAGCCAGCAGAAACAGCGGCGGTATCGAAACCTTCC GAGAGAGGCAGGAAAACAGGGCCGGCCACTAGGGGAGGGGGGAGAGAGGG GACAAACGCTTACTTTTCAGTAGAGCAGACTGACACCTCCGGCAAGCAAC GGCGGAGTGCACCCACGACAGGCCCTCACCGGGTCGTCGACGGCCGCCGC TCTTTGAGCACCCAAGATGGTGGTGCTCCGTCACCGCCCACCAAAAGTAC GGCGCGCGTAGGTCCGAACTTGAAAGCTTTCCCTGGTGCGTGCAGCAACA ACTTAAATACCCGGCCTCAACGAGCACACGCCGGGAGAGGAGAAGTAGAA CGACAAAAACCTTCCAGAGAACCGTCTGCGGAAACGGCTGCCACGGTGAG GGGTCGCGTTAGGGATCTCCAGATCTCACCCGGAAGGCCACGACGCCGAG AGAGTCCGGGAAGGTTGTCAACGCGCGACAACTGCACGGCGGGCGGCGAC CAGAGGTTCAAGGCTTCCGCCGTGTTCCTCGGACATACCGAGCAGGTGCT GGCTCTAGCCCGCCACAAGGACATCTTGTTTTCAGCGGCAGTCGACGGCA CCGCGAAGGTAAACACGCTCAGCTCCTTGACAGCCACAACTACAGGACGA CGGTAATCACCGCGTTTTGTCACGATGGACGCTCAGTCGTCATTTGGAGG AGTGAGAGAGAAGCCATACGCTCGCTAACGACCCTGCCCGTGCCCCTCTT GTTGTGCTTTTTATTTTGTGTCATTTGTCCCACGCTGACGGCGGCTACTA GGCCTGGGATACCTACTCTCAGCATTGCCTTGCTACGTATGAGGGCCACC GGAAAGCTGTGTGGGGAATGCAGGTTTCAAACCGTACGCTAATCACGGGT AGCGCCGACTGCACCGTTCGATTCTGGGACATCGAGACAGCCCAGTCCCT TCACGTTGTTGACTTGGTGAGCCAGCCCAGATGGAAGCGGCCCATTGTAT CACACTCAGGCTCAACATATTTTTTAATTTGACCAATTATGATTGAATTT CACTGGTTTCAGCTTTCGCATATTATTTTGGCATGGATACGGCAGACTGC GTGCGACTCTCTTTTCATTATACAAGAGATGGTTGCAGTAGACAACACGC AGAACACACCAAATCGGAAAACGGCATCCAATCCGAATCGTATTTAGACA AATTGGTTCCCTATCGTGTAGTGTTTTCTTTCCTTTATTTATTTATTTTT TTTTACCTCCTCCGGTACGTTGTTGTGTCTAGTTTGTGACCACGGGCTAG ATTTTGGAGATGAGCTAACGTGAGAACCAATAGCGAAAATAATCTACTGC GGGGTGGATGCCCACGGACTTGTTTCAGCGCTCGTCAGTACGGGATGTGG TTATCGTCGGAGATTTCCTGGCCGTAGCGACGTCCAACCCCGGCGTCGAA GTCATCGACTTACACCACATGAAGCGGCGTGGAAGGCTCGAGGGCCACCT ATTGGCAGTTTCCGCCGTGGCTGCGATTGAAGGAGAGGGGCTTTTGGTCA CCGGCTCACACGACACGTTCCTCAGGCAAGTATTTTATCTATGCCCTCAT GTACAAACGTATAAAGAAAACGTGTTTTCCAGCTCAGCTCACACACAAGC AGCCGTACGGTTGTGAGAGCACGAAGAATCGAGCTCACAAAGCTTGCCAC CATCAAGGCAAGCACAAACAAATTAAAATACTTCTTTGAGGTCTATGAGA AAAAAAAGTGTCAACTGGTACTGGCACAGCCGCGCAGCTTAGTCAGCTCC TCTCAAGTGCAGGGCGAATATGTGGTCCGTGTTGTATTCGTCTAATGCGT TTGTTCGACGAGAACCTCCGCTTGAATAAAATAATTTCAGACTTCCAGCC CAACGCCACCATCAACTAAAACCTCGGTGATGTCGCAGTAGGAGGTGAAA TAGTTGCATGTATCATCTCCTCTGTCGCTCTGCCTCTGTTTTTTCCCCAA GACTTCGGGAGCAAATTGTTCTACGATCATAATGACTTGTCTGAGTATTG GCGCAACGACTTGTTCTCCAACATGCATCCGACAGGGTCTGGGACCCCTT TTCTGGGAACTGCGAAGCCGTGCTAGGTGGCCATGGTGGCACCGTCGGCG CTCTTTGCACAATGTCTAGGCCACCGCCGGTACAGGCCAATAGAAAAACC TTGATGAATGAAGGAGCGCTCATTGTTAGCGGGTCGGGGGATTCTACCGT CAGGGTGTGGGGCCGAGCTGGTGTTGTCGGGGAGTTGAGAGAATGGGCAT GCCGGGCGGTGCTAGAAGGACACAGGTGTGTGAGTGTGTGTATATGTGTG TGTCTTTGTGTGTGTACATCTACTACGACTGTGCGCGCGTGTGTTCTTTT TGTGCTGAAAGTACGACTCGCATGGTCAAACGGGCCTACGCCGCCATCGG GCCGGTCCGGCGAATCACTTTCAGCCGGACACCCTGTGAAATGGCGATAA ATACCCGAGTCAATGTCTCGCTGGTTGTCTGCCGTGTGCTATATTACACG TGCACGCACCGACGGGGGCGACAAAGCGCCTGAGGCGGACTCAGCGGCCG CGTCTCTTAATGCTCTCTCCCCTGTTGAGGTTACGCTCTGCACGAGTTTA CCGTACACACGTTTTCATGCTCGGAAAAAAAAACGAAAGGCGTACAATCG ATCCAGCAACGCACTCCTTATAGTTTCTTGCATCGTCCGAGTATTGTACC ACAAAAACTTGCTCGACGTTAATCTGAACGCTCCGTCGAACCAAAACTTG CATCACTAGGCACGGGGTATGGGCGGTGCACGGCTCGTCTACCTCCGGCG TCTTTGCCACGGGCGGGGGGGATGCCACCGTCAAAATTTGGGCACCACGC GCAGTCACCGGCAACGTCAGCGGTGACAACGTTATGCTCGGGGGGGGGCA GATTGTCAGCGAAGAGCACGACCAGCGGCAGCATCACAGATGGGAGTGCG TCGGGGGCGTGAGGGGCGCCGCCGGAGCCGTTGGGGCGGTTCTCGTGAAC GAAGAGGCGTTGGTATTCGGTACATCGGAGGCGCTTATAGCAAGATTTCC GTTGAAGTCGTGCATGCCGACACGTTAA
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig143:95983..99660-

>mRNA_P-littoralis_Contig143.17.1 ID=mRNA_P-littoralis_Contig143.17.1|Name=mRNA_P-littoralis_Contig143.17.1|organism=Pylaiella littoralis U1_48|type=CDS|length=2019bp|location=Sequence derived from alignment at P-littoralis_Contig143:95983..99660- (Pylaiella littoralis U1_48)
GCTATTGTCAACGATACCCCACCTTCATCAAAGTCGCCAAACCCTTACAA
ACGAAGAGGGTTGCTTCCGCGAAGGAGCCCGCCACCGCTCCAGCAAAAGT
TCGACGTCGACGATTGTTCTAGCAGCAAAGGTACCACCGGAGGATTGCGA
CCCGCGCCGCCGACGAGCCCACCCGGAATTTACTTCGACGGCAGAGGTTC
GCCGATACTGTTGGACTCTTCTTGCCGCGACAGCCGGGCATCTTCCGGAA
GCGCTTCTCCGCACATCCGGCTGTGGTACCCGGCGGACCCCCGCCCTTCT
TCTGGCGGAAATGGTGAAGTAAATGATGGCGGTGGCGACGAAAGCGCGTA
CGTCGTGCACCCCACCTTTCGACGCATGTTCGACGACAGGGTCGGCGGCA
TCGGCGGTGGCGGCAGTCAAAGAGCATCATCACGTCGACCAACGCATGGT
GCGGTTGGATTATCGCGCTCGCAGCCAGCAGAAACAGCGGCGGTATCGAA
ACCTTCCGAGAGAGGCAGGAAAACAGGGCCGGCCACTAGGGGAGGGGGGA
GAGAGGGGACAAACGCTTACTTTTCAGTAGAGCAGACTGACACCTCCGGC
AAGCAACGGCGGAGTGCACCCACGACAGGCCCTCACCGGGTCGTCGACGG
CCGCCGCTCTTTGAGCACCCAAGATGGTGGTGCTCCGTCACCGCCCACCA
AAAGTACGGCGCGCGTAGGTCCGAACTTGAAAGCTTTCCCTGGTGCGTGC
AGCAACAACTTAAATACCCGGCCTCAACGAGCACACGCCGGGAGAGGAGA
AGTAGAACGACAAAAACCTTCCAGAGAACCGTCTGCGGAAACGGCTGCCA
CGGTGAGGGGTCGCGTTAGGGATCTCCAGATCTCACCCGGAAGGCCACGA
CGCCGAGAGAGTCCGGGAAGGTTGTCAACGCGCGACAACTGCACGGCGGG
CGGCGACCAGAGGTTCAAGGCTTCCGCCGTGTTCCTCGGACATACCGAGC
AGGTGCTGGCTCTAGCCCGCCACAAGGACATCTTGTTTTCAGCGGCAGTC
GACGGCACCGCGAAGGCCTGGGATACCTACTCTCAGCATTGCCTTGCTAC
GTATGAGGGCCACCGGAAAGCTGTGTGGGGAATGCAGGTTTCAAACCGTA
CGCTAATCACGGGTAGCGCCGACTGCACCGTTCGATTCTGGGACATCGAG
ACAGCCCAGTCCCTTCACGTTGTTGACTTGCGCTCGTCAGTACGGGATGT
GGTTATCGTCGGAGATTTCCTGGCCGTAGCGACGTCCAACCCCGGCGTCG
AAGTCATCGACTTACACCACATGAAGCGGCGTGGAAGGCTCGAGGGCCAC
CTATTGGCAGTTTCCGCCGTGGCTGCGATTGAAGGAGAGGGGCTTTTGGT
CACCGGCTCACACGACACGTTCCTCAGGCAAGTATTTTATCTATGCCCTC
ATGTACAAACGGTCTGGGACCCCTTTTCTGGGAACTGCGAAGCCGTGCTA
GGTGGCCATGGTGGCACCGTCGGCGCTCTTTGCACAATGTCTAGGCCACC
GCCGGTACAGGCCAATAGAAAAACCTTGATGAATGAAGGAGCGCTCATTG
TTAGCGGGTCGGGGGATTCTACCGTCAGGGTGTGGGGCCGAGCTGGTGTT
GTCGGGGAGTTGAGAGAATGGGCATGCCGGGCGGTGCTAGAAGGACACAG
GCACGGGGTATGGGCGGTGCACGGCTCGTCTACCTCCGGCGTCTTTGCCA
CGGGCGGGGGGGATGCCACCGTCAAAATTTGGGCACCACGCGCAGTCACC
GGCAACGTCAGCGGTGACAACGTTATGCTCGGGGGGGGGCAGATTGTCAG
CGAAGAGCACGACCAGCGGCAGCATCACAGATGGGAGTGCGTCGGGGGCG
TGAGGGGCGCCGCCGGAGCCGTTGGGGCGGTTCTCGTGAACGAAGAGGCG
TTGGTATTCGGTACATCGGAGGCGCTTATAGCAAGATTTCCGTTGAAGTC
GTGCATGCCGACACGTTAA
back to top