mRNA_P-littoralis_Contig143.14.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig143.14.1
Unique NamemRNA_P-littoralis_Contig143.14.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig143.14.1 vs. uniprot
Match: A0A6H5JKZ2_9PHAE (DLH domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JKZ2_9PHAE)

HSP 1 Score: 466 bits (1198), Expect = 8.620e-158
Identity = 253/381 (66.40%), Postives = 284/381 (74.54%), Query Frame = 3
Query:   21 MCRRLALVATLLSFSFTSARAWLCAVRPPCRGRNGFCTRTRSIKLNQPAARTMSSCKDSIDVEEIWPHLAGKRTCATEATGKVIREAWAQDTRS--TAVGYGTSISSSSWSIRRSVVHYTHGETALEGLFARPEGEGLPDRLPGVIIAHTAVGPQEDMILWKLDAIARLGYAAFALDMFGTGHALWDRPQSLAARRPITEDRSLMQDRAMAAVRTLGLMEEVDQDRLAAVGYCFGGMAMLDLARMTARSSDGVDDDDVTGDPRLKAVASLHGILAPILPGAGGGNNVVGAKPDDALIGVPRVLVLHATADPFVPPKQIQAMEEEFARRGANVEIVRYGGEALHAFTRPEKTGQADKDAGLQYCKHADEDSWRRVVALLQEE 1157
            MCR LA    L+S    SAR W  A+ P       F  +T   +L     R  S     I V++IWP LAGK TCA EA GKVIR AWA  T +  T  G G S SS+SWSIRRSVV Y  G+TAL+GL+ RPEGEGLPDRLPGVI+AHTAVGPQEDMILWKLD IA LGYAAFALDMFGTG ALW+R +SLAARRPITEDRSLMQ RA AAVRTL  ME +D++RLAAVGYCFGGM +LDLARM     DG DD      PRLKAVASLHGILAPI PG GG +   G   DDA + VPRVLVLHATADPFVPP+Q++AMEEE +RRGA +E+VRYGG A+HAFTRPEKT Q D+DAGL YCK+A+EDSWRRVV LL+EE
Sbjct:    1 MCRGLAQFVALVSV-LPSARGWQFALSPR------FAGKTPGTRLR----RVQSMDMKMISVDDIWPQLAGKETCANEAAGKVIRAAWAVATTNPDTTNGRGASSSSASWSIRRSVVEYNDGDTALQGLYTRPEGEGLPDRLPGVILAHTAVGPQEDMILWKLDQIALLGYAAFALDMFGTGRALWNRAESLAARRPITEDRSLMQARATAAVRTLSQMEGIDEERLAAVGYCFGGMTVLDLARMVR--PDG-DDAGANTPPRLKAVASLHGILAPISPGTGGEDGA-GLAADDAALAVPRVLVLHATADPFVPPEQVRAMEEELSRRGARLEVVRYGGSAMHAFTRPEKTSQVDRDAGLSYCKYAEEDSWRRVVELLREE 366          
BLAST of mRNA_P-littoralis_Contig143.14.1 vs. uniprot
Match: A0A836CLU0_9STRA (Dienelactone hydrolase family protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CLU0_9STRA)

HSP 1 Score: 200 bits (508), Expect = 7.480e-56
Identity = 129/329 (39.21%), Postives = 169/329 (51.37%), Query Frame = 3
Query:  204 VEEIWPHLAGKRTCATEATGKVIREAWAQDTRSTAVGYGTSISSSSWSIRRSVVHYT-HGETALEGLFARPEGEGLPDRLPGVIIAHTAVGPQEDMILWKLDAIARLGYAAFALDMFGTGHALWDRPQSLAARRPITEDRSLMQDRAMAAVRTLGLMEEVDQDRLAAVGYCFGGMAMLDLARMTARSSDGVDDDDVTGDPRLKAVASLHGILAPILPGAGGGNNVVGAKPDDALIGVP------RVLVLHATADPFVPPKQIQAMEEEFARRGAN-VEIVRYGGEALHAFTRPEKTGQADKDAGLQYCKHADEDSWRRVVALLQEELKQ 1166
            +++ WP L G RT A+     ++   W+Q                 + ++R +V Y  H    L+G   RP  +   + LP V++AHTAVG Q+D++L  LD +A LGY AF LDMFG G A+WDR QSLAAR P+T DRSL+  RA AA+     +  VD  R+A VGYCFGG+  LD    T R+  G+            A  + HGILAP               PD  L          RVLVLH  ADPFVPP Q++A E E A  G     ++ Y G A HAFTRPEK   +D+ AGL Y   A E  W  +   L++  +Q
Sbjct:    2 IDKCWPQLTGLRTSASAEAAAILNNRWSQFELERL-----------FDLQRQIVPYIDHTGLPLQGFVVRPAAQAA-ESLPCVLVAHTAVGIQDDLLLQILDGVAGLGYVAFGLDMFGAGQAVWDREQSLAARAPLTSDRSLLARRAEAALHCATQLRGVDARRVAVVGYCFGGIVALD----TVRAGCGI-----------AAAITFHGILAP-------------PPPDQDLSWCKHYSTGCRVLVLHGGADPFVPPDQVRAFEAEMAAAGVQQCSVIVYDG-ARHAFTRPEKVLDSDRSAGLFYDAAAAEAGWAAMRGCLEQAFEQ 289          
BLAST of mRNA_P-littoralis_Contig143.14.1 vs. uniprot
Match: A0A7S0HUL7_9CRYP (Hypothetical protein n=1 Tax=Hanusia phi TaxID=3032 RepID=A0A7S0HUL7_9CRYP)

HSP 1 Score: 186 bits (471), Expect = 1.370e-50
Identity = 121/311 (38.91%), Postives = 160/311 (51.45%), Query Frame = 3
Query:  237 RTCATEATGKVIREAWAQDTRSTAVGYGTSISSSSWSIRRSVVHYTHGETALEGLFARPEGEGLPDRLPGVIIAHTAVGPQEDMILWKLDAIARLGYAAFALDMFGTGHALWDRPQSLAARRPITEDRSLMQDRAMAAVRTLGLMEEVDQDRLAAVGYCFGGMAMLDLARMTARSSDGVDDDDVTGDPRLKAVASLHGILA-PILPGAGGGNNVVGAKPDDALIGVPRVLVLHATADPFVPPKQIQAMEEEFARRGANVEIVRYGGEALHAFTRPEKTGQADKDAGLQYCKHADEDSWRRVVALLQEELKQ 1166
            RT   +  G+ I+ AW  D           I      +++S V Y+ G   L G    P+      ++P V++ HTAVG QED + WKL+A+A LG+ AF  DMFGTG ALWDR ++L ARR +  DR  M DR  AA  T+  + +VD     A+G+CFGGMA+LDLAR                 P L+A  S HGIL  P LP   GG    G  P +       +LV H   DPFV  + +    E    R +N  +  Y G A HAFTRPEKT  +D  AGL Y + AD DS  R+  +L+  L++
Sbjct:    8 RTSYNDEAGRKIQAAWRDD---------ADILQCKHQLKKSSVSYSEGGRELMGEACWPDVGN--QKMPAVLLVHTAVGLQEDFMRWKLEAVASLGFVAFGADMFGTGRALWDREEALEARRELVCDRRRMIDRVKAAATTMMSLPQVDPRGFGALGFCFGGMAVLDLARSGCM-------------PNLEATVSFHGILDDPDLPDDYGGRE--GPVPGE-------ILVCHGEDDPFVSSENLNLFLENLKLRKSNFHLQAYPG-AKHAFTRPEKTEPSDFSAGLFYNEQADRDSSERMKGMLRRRLRR 284          
BLAST of mRNA_P-littoralis_Contig143.14.1 vs. uniprot
Match: A0A7S1HA30_HEMAN (Hypothetical protein n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S1HA30_HEMAN)

HSP 1 Score: 177 bits (448), Expect = 2.610e-48
Identity = 105/230 (45.65%), Postives = 131/230 (56.96%), Query Frame = 3
Query:  480 EDMILWKLDAIARLGYAAFALDMFGTGHALWDRPQSLAARRPITEDRSLMQDRAMAAVRTLGLMEEVDQDRLAAVGYCFGGMAMLDLARMTARSSDGVDDDDVTGDPRLKAVASLHGILAPILPGAGGGNNVVGAKPDDALIGVPRVLVLHATADPFVPPKQIQAMEEEFARRGA-NVEIVRYGGEALHAFTRPEKTGQADKDAGLQYCKHADEDSWRRVVALLQEELKQ 1166
            ED + WKLD +A  GY AF +DMFG G ALWD+ ++LAAR+P+ EDRS M +R M A  T   ME  D  R+ A+GYCFGGMA+LDLAR     S             LKA  SLHGIL           + +   P D    V +VLV H  +DPFV P+ ++  E + A R A ++ I  Y G + HAFTRPEKT + D  AGL YC+ AD  SW    ALL   L+Q
Sbjct:    1 EDFMFWKLDKLASQGYLAFGVDMFGAGRALWDKEEALAARKPLREDRSQMIERMMCAYETACSMEVADSARVGAIGYCFGGMAVLDLARSGLPKS-------------LKATVSLHGIL-----------DRLDTPPTDV---VGKVLVCHGGSDPFVTPEMLRDFESDMAARNAEDLHIHTYSG-SKHAFTRPEKTTEGDSAAGLYYCELADAASWAAASALLDSCLRQ 202          
BLAST of mRNA_P-littoralis_Contig143.14.1 vs. uniprot
Match: A0A0G4EJ35_VITBC (DLH domain-containing protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4EJ35_VITBC)

HSP 1 Score: 171 bits (434), Expect = 4.050e-45
Identity = 109/276 (39.49%), Postives = 153/276 (55.43%), Query Frame = 3
Query:  342 WSIRRSVVHYTHGETALEGLFARPEGEGLPDRL----PGVIIAHTAVGPQEDMILWKLDAIARLGYAAFALDMFGTGHALWDRPQSLAARRPITEDRSLMQDRAMAAVRTLGLMEEVDQDRLAAVGYCFGGMAMLDLARMTARSSDGVDDDDVTGDPRLKAVASLHGIL-APILPGAGGGNNVVGAKPDDALIGVPRVLVLHATADPFVPPKQIQAMEEEFARRGANVEIVRYGGEALHAFTRPEKTGQADKDAGLQYCKHADEDSWRRVVALLQE 1154
            W+ +++ V Y    T L GL    E +    ++    P V++  TAVG +ED +   LD  A LGY AF +DM+G G A+WD+ +S A R+P+T DR+ +Q R +AA +    + +V +D +A VGYCFGGM  LDLAR               G P +K V S HG+L  P +    GG            +  P VLV H + DPF+ P Q QA ++E + +  + +I  YGG A H+FTRPEK  QAD+DAGLQYC  ++  S+R   A LQ+
Sbjct:   42 WTYKQTDVAYQDEGTELMGLAVWVERDDASRQILGERPCVLVCPTAVGLREDFLFGALDRYASLGYVAFGVDMYGEG-AVWDKGRSRAIRQPLTADRTKLQRRMVAAYQAAQSLPQVQEDNIAVVGYCFGGMCALDLAR--------------AGVP-MKGVVSFHGVLDRPAVDKVPGG------------LSCP-VLVHHGSDDPFISPDQFQAFQQELSDQRTDWQIHIYGG-AKHSFTRPEKVTQADRDAGLQYCPKSERRSYRTTKAFLQD 287          
BLAST of mRNA_P-littoralis_Contig143.14.1 vs. uniprot
Match: A0A7S2XY83_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XY83_9STRA)

HSP 1 Score: 161 bits (408), Expect = 7.240e-41
Identity = 120/335 (35.82%), Postives = 166/335 (49.55%), Query Frame = 3
Query:  204 VEEIWPHLAGKRTCATEATGKVIREAWAQDTRSTAVGYGTSISSSSWSIRRSVVHYTHGETA-LEGLFARPEGE--------GLPDRLPGVIIAHTAVGPQEDMILWKLDAIARLGYAAFALDMFGT------GHALWDRPQSLAARRPITEDRSLMQDRAMAAVRTLGLMEEVDQDRLAAVGYCFGGMAMLDLARMTARSSDGVDDDDVTGDPRLKAVASLHGILAPILPGAGGGNNVVGAKPDDALIGVPRVLVLHATADPFVPPKQIQAMEEEFARRGANVEIVRYGGEALHAFTRPEKTGQADKDAGLQYCKHADEDSWRRVVALLQEELK 1163
            ++ +W      +T A+E   +V++ A+  D     V +G       ++IRR+ + Y+    A L GL A P  +         LP +LPGV++AHTAVG  +D ILWKL+AIA LGYAAFALDM+G           WDR  +   RR + EDR   Q RA A          VD+ R+AA+GYC+GGM +LDLA+              +G P LK V ++HGIL             V  + D +LI  P V + H  ADPFV  +Q+ A +E+  +   +  I  + G   HAFTRPEK    ++D G      A E SW      L +  K
Sbjct:   54 LKTLWDFTGDFKTSASEPEAQVLQNAYENDLD---VAHGHE---QGYTIRRTKIPYSDSTQARLSGLLAWPVQDPLPPAGAPALPPKLPGVLVAHTAVGNGDDFILWKLEAIASLGYAAFALDMYGEEASGAHNEGAWDRAVNAEVRRSLREDRLSQQARARAGYEVFASQPMVDESRMAALGYCYGGMVVLDLAK--------------SGVP-LKGVGTMHGILD------------VPKELDTSLIQCP-VQLYHGKADPFVSQEQLVAFQEDMNKNDISWNIHSFPGIG-HAFTRPEKL-LFEEDVGQN---DASEKSWNSFKVFLDKVFK 349          
BLAST of mRNA_P-littoralis_Contig143.14.1 vs. uniprot
Match: A0A1Y6D2S3_9GAMM (Dienelactone hydrolase n=2 Tax=Methylomagnum ishizawai TaxID=1760988 RepID=A0A1Y6D2S3_9GAMM)

HSP 1 Score: 157 bits (396), Expect = 1.980e-40
Identity = 112/273 (41.03%), Postives = 142/273 (52.01%), Query Frame = 3
Query:  348 IRRSVVHYTHGETALEGLFARPEGEGLPDRLPGVIIAHTAVGPQEDMILWKLDAIARLGYAAFALDMFGTGHALWDRPQSLAA-RRPITEDRSLMQDRAMAAVRTLGLMEEVDQDRLAAVGYCFGGMAMLDLARMTARSSDGVDDDDVTGDPRLKAVASLHGILAPILPGAGGGNNVVGAKPDDALIGVPRVLVLHATADPFVPPKQIQAMEEEFARRGANVEIVRYGGEALHAFTRPEKTGQADKDAGLQYCKHADEDSWRRVVALLQEELK 1163
            I+   V YTH +TALEG FA       P  LP V+IAH   G +E+ +  K   +A LGYAAFALDM+G G  L   P+  A   +P  +DR L+Q R  AA+ TL L  EVD  R+AA+G+CFGG+ +LDLAR       G D         L+ V S HG+  P  PG   GNN + AK          VL LH   DP V P+Q+ A+  E  + GA+ +I  YG   +HAFT P      D   G  Y + AD  SW  +   L E LK
Sbjct:    3 IQTRTVDYTHADTALEGFFAYDNRRAQP--LPAVLIAHAWAG-REEFVCDKARKLAELGYAAFALDMYGKG-VLGSGPEENAQLMQPFVQDRVLLQSRITAALDTLRLQPEVDARRIAAMGFCFGGLCVLDLART------GAD---------LRGVVSFHGLFIP--PG-NTGNNKIKAK----------VLALHGFDDPMVKPEQMVALGHELTQAGADWQIHAYG-HTVHAFTNPRAN---DPGFGTVYQETADRRSWESLKDFLAEVLK 239          
BLAST of mRNA_P-littoralis_Contig143.14.1 vs. uniprot
Match: A0A4V1Z9F2_9GAMM (Dienelactone hydrolase family protein n=2 Tax=Methylococcaceae TaxID=403 RepID=A0A4V1Z9F2_9GAMM)

HSP 1 Score: 150 bits (378), Expect = 6.850e-38
Identity = 101/266 (37.97%), Postives = 134/266 (50.38%), Query Frame = 3
Query:  363 VHYTHGETALEGLFARPEGEGLPDRLPGVIIAHTAVGPQEDMILWKLDAIARLGYAAFALDMFGTGHALWDRPQSLAARRPITEDRSLMQDRAMAAVRTLGLMEEVDQDRLAAVGYCFGGMAMLDLARMTARSSDGVDDDDVTGDPRLKAVASLHGILAPILPGAGGGNNVVGAKPDDALIGVPRVLVLHATADPFVPPKQIQAMEEEFARRGANVEIVRYGGEALHAFTRPEKTGQADKDAGLQYCKHADEDSWRRVVALLQEEL 1160
            + Y HG   LEG  A  E   LP  LP V+IAH A G ++D +  K   +A LGYAAFALDM+G G       Q+    +P   DR+L+Q R   A+  +  + +VD DR+AA+G+CFGG+ +LDLAR  A                L+ V S HG+    +P AG  N  + AK          VL LH   DP VPP+Q+ A+ +E    GA+ +I  YG    HAFT P      D   G  Y   AD  SW  + + L+E L
Sbjct:    8 IDYRHGPQPLEGFLAYDES--LPGPLPAVLIAH-AWGGRDDFVCGKARRLAELGYAAFALDMYGKGVLGTGPEQNAQLMQPFMADRALLQGRMQQALEVVKALPQVDPDRVAAMGFCFGGLCVLDLARSGAE---------------LRGVISFHGLF---VPPAGVPNQPIRAK----------VLALHGYDDPMVPPEQVTALAQELTAAGADWQIHMYG-RTTHAFTNPAAN---DPGFGTVYDATADARSWLSLQSFLREVL 238          
BLAST of mRNA_P-littoralis_Contig143.14.1 vs. uniprot
Match: UPI0005EBEB14 (dienelactone hydrolase family protein n=1 Tax=Methyloterricola oryzae TaxID=1495050 RepID=UPI0005EBEB14)

HSP 1 Score: 147 bits (370), Expect = 9.620e-37
Identity = 98/267 (36.70%), Postives = 138/267 (51.69%), Query Frame = 3
Query:  363 VHYTHGETALEGLFARPEGEGLPDRLPGVIIAHTAVGPQEDMILWKLDAIARLGYAAFALDMFGTGHALWDRPQSLAARRPITEDRSLMQDRAMAAVRTLGLMEEVDQDRLAAVGYCFGGMAMLDLARMTARSSDGVDDDDVTGDPRLKAVASLHGILAPILPGAGGGNNVVGAKPDDALIGVPRVLVLHATADPFVPPKQIQAMEEEFARRGANVEIVRYGGEALHAFTRPEKTGQADKDAGLQYCKHADEDSWRRVVALLQEELK 1163
            V Y HG T L G  A  +   LP  LP V+++H A G +++    K  A+ARLGYA FALDM+G         ++     P  +DR+L+Q R +AA++ +  + EVD  R+AA+G+CFGG+ +LDLAR       G D         ++ V S HG+L P         N+ G +P  A     +VL LH   DP  PP+Q+ A++ E    GA+ ++  YG   LHAFT P      D   G  Y + AD  SW+ +   L E LK
Sbjct:   10 VEYAHGSTRLLGFLAWDDS--LPKPLPAVLVSH-AWGGRDEFACGKAQALARLGYAGFALDMYGDARVGSGPEENSRLMAPFMKDRALLQARQLAALQAVRALSEVDGTRVAAIGFCFGGLCVLDLART------GAD---------IRGVVSFHGLLNPP-------ENIAG-RPILA-----KVLALHGHDDPMAPPEQVLALQRELTTAGADWQVQVYG-HTLHAFTNPRAN---DPGFGTVYKEIADRRSWQSMQNFLSEVLK 241          
BLAST of mRNA_P-littoralis_Contig143.14.1 vs. uniprot
Match: A0A7S1J2W1_9EUGL (Hypothetical protein n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S1J2W1_9EUGL)

HSP 1 Score: 145 bits (366), Expect = 1.240e-36
Identity = 100/232 (43.10%), Postives = 124/232 (53.45%), Query Frame = 3
Query:  504 DAIARLGYAAFALDMFGTGHALWDRPQSLAARRPITEDRSLMQDRAMAAV---------RTLGLMEEVDQDRLAAVGYCFGGMAMLDLARMTARSSDGVDDDDVTGDPRLKAVASLHGILAPILPGAGGGNNVVGAKPD---DALIGVPRVLVLHATADPFVPPKQIQAMEEEFARRGANVEIVRYGGEALHAFTRPEKTGQADKDAGLQYCKHADEDSWRRVVALLQEELK 1163
            +A+A LGY AFA+DM G G ALWD  ++  AR P+ EDR L++ R  AA+         + LG    +D DR+AAVGYCFGG+ +LDLAR  A              P L+ V S HGIL       GGG       PD   DAL   PR+LV +  ADPFVPP + +    E  RR A +E V + G A H FTRPEK   AD  AG  Y   AD  SW  + A L + L+
Sbjct:    1 EALASLGYVAFAVDMLGAGRALWDGAEAKTARAPLYEDRRLLRSRMQAALTAASADSFAQALGPNVALDLDRVAAVGYCFGGLCVLDLARGNA--------------PGLRGVVSFHGILD------GGG------LPDPETDALR--PRILVHNGDADPFVPPDKREQFLAEMGRRHAPLEFVSHPG-ARHGFTRPEKVQPADFAAGFGYDPQADAASWGSMKAFLADVLQ 203          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig143.14.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JKZ2_9PHAE8.620e-15866.40DLH domain-containing protein n=2 Tax=Ectocarpus T... [more]
A0A836CLU0_9STRA7.480e-5639.21Dienelactone hydrolase family protein n=1 Tax=Trib... [more]
A0A7S0HUL7_9CRYP1.370e-5038.91Hypothetical protein n=1 Tax=Hanusia phi TaxID=303... [more]
A0A7S1HA30_HEMAN2.610e-4845.65Hypothetical protein n=1 Tax=Hemiselmis andersenii... [more]
A0A0G4EJ35_VITBC4.050e-4539.49DLH domain-containing protein n=1 Tax=Vitrella bra... [more]
A0A7S2XY83_9STRA7.240e-4135.82Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
A0A1Y6D2S3_9GAMM1.980e-4041.03Dienelactone hydrolase n=2 Tax=Methylomagnum ishiz... [more]
A0A4V1Z9F2_9GAMM6.850e-3837.97Dienelactone hydrolase family protein n=2 Tax=Meth... [more]
UPI0005EBEB149.620e-3736.70dienelactone hydrolase family protein n=1 Tax=Meth... [more]
A0A7S1J2W1_9EUGL1.240e-3643.10Hypothetical protein n=1 Tax=Eutreptiella gymnasti... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig143contigP-littoralis_Contig143:92239..96478 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LC04
PFAMsDLH
Model size1825
Max annot lvl2759|Eukaryota
Hectar predicted targeting categorysignal peptide
Exons6
Evalue1.54e-159
EggNOG OGsCOG0412@1|root,2SB8C@2759|Eukaryota
DescriptionDienelactone hydrolase family
Cds size1149
COG categoryQ
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig143.14.1prot_P-littoralis_Contig143.14.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig143 92259..95822 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789671.4892974-UTR-P-littoralis_Contig143:92238..922581680789671.4892974-UTR-P-littoralis_Contig143:92238..92258Pylaiella littoralis U1_48UTRP-littoralis_Contig143 92239..92258 +
1680789671.5681427-UTR-P-littoralis_Contig143:95822..964781680789671.5681427-UTR-P-littoralis_Contig143:95822..96478Pylaiella littoralis U1_48UTRP-littoralis_Contig143 95823..96478 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789671.5071735-CDS-P-littoralis_Contig143:92258..925041680789671.5071735-CDS-P-littoralis_Contig143:92258..92504Pylaiella littoralis U1_48CDSP-littoralis_Contig143 92259..92504 +
1680789671.5202157-CDS-P-littoralis_Contig143:92788..930051680789671.5202157-CDS-P-littoralis_Contig143:92788..93005Pylaiella littoralis U1_48CDSP-littoralis_Contig143 92789..93005 +
1680789671.529369-CDS-P-littoralis_Contig143:93718..938671680789671.529369-CDS-P-littoralis_Contig143:93718..93867Pylaiella littoralis U1_48CDSP-littoralis_Contig143 93719..93867 +
1680789671.5414271-CDS-P-littoralis_Contig143:94309..943831680789671.5414271-CDS-P-littoralis_Contig143:94309..94383Pylaiella littoralis U1_48CDSP-littoralis_Contig143 94310..94383 +
1680789671.5501149-CDS-P-littoralis_Contig143:94734..949931680789671.5501149-CDS-P-littoralis_Contig143:94734..94993Pylaiella littoralis U1_48CDSP-littoralis_Contig143 94735..94993 +
1680789671.5583923-CDS-P-littoralis_Contig143:95618..958221680789671.5583923-CDS-P-littoralis_Contig143:95618..95822Pylaiella littoralis U1_48CDSP-littoralis_Contig143 95619..95822 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig143.14.1

>prot_P-littoralis_Contig143.14.1 ID=prot_P-littoralis_Contig143.14.1|Name=mRNA_P-littoralis_Contig143.14.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=383bp
MCRRLALVATLLSFSFTSARAWLCAVRPPCRGRNGFCTRTRSIKLNQPAA
RTMSSCKDSIDVEEIWPHLAGKRTCATEATGKVIREAWAQDTRSTAVGYG
TSISSSSWSIRRSVVHYTHGETALEGLFARPEGEGLPDRLPGVIIAHTAV
GPQEDMILWKLDAIARLGYAAFALDMFGTGHALWDRPQSLAARRPITEDR
SLMQDRAMAAVRTLGLMEEVDQDRLAAVGYCFGGMAMLDLARMTARSSDG
VDDDDVTGDPRLKAVASLHGILAPILPGAGGGNNVVGAKPDDALIGVPRV
LVLHATADPFVPPKQIQAMEEEFARRGANVEIVRYGGEALHAFTRPEKTG
QADKDAGLQYCKHADEDSWRRVVALLQEELKQ*
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mRNA from alignment at P-littoralis_Contig143:92239..96478+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig143.14.1 ID=mRNA_P-littoralis_Contig143.14.1|Name=mRNA_P-littoralis_Contig143.14.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=4240bp|location=Sequence derived from alignment at P-littoralis_Contig143:92239..96478+ (Pylaiella littoralis U1_48)
ACCCACACTGCTCTACCGACATGTGCAGAAGGCTGGCCCTGGTGGCAACA CTGCTGTCATTTTCTTTCACCTCTGCCCGAGCATGGCTGTGCGCGGTTAG GCCACCCTGCCGTGGTAGGAACGGCTTCTGCACGCGAACGAGGAGTATAA AACTAAATCAGCCCGCTGCAAGAACAATGTCTTCCTGTAAGGACAGCATC GACGTTGAGGAGATATGGCCCCACCTGGCAGGGAAGCGGACATGCGCTAC CGAGGCCACCGGCAAGGTGCAGCAGCAGCGTGGTATTATACGTGATACGT GGGACTGCGGGAATCCACGGTCACATACGGTTTCAGACGGGGTATCCTAC GTATGATACAAGTTCCAATGTTTTGGAACGGGACTGTTCGTTTGAGGAAA GACGCCTCCTGGTTGGACGACCACACTGCTACCGGTTGTACTTGTGTATC ATACTGGCCAAAACTTCAAACTTTCCAGAGCAGAACCCCCCTACTACCTC AGCGCCCCCCTCCGCGTTGCTGATATGAACCTACTTCAACATACAAGTAG GTAATACGGGAAGCCTGGGCACAAGACACACGAAGTACTGCCGTGGGGTA CGGCACTAGCATCTCTTCTTCTTCATGGAGCATCCGGCGCAGCGTCGTGC ATTACACCCACGGCGAAACCGCCCTCGAAGGACTATTCGCGAGGCCCGAG GGCGAGGGGCTTCCCGACAGGCTTCCAGGAGTGATTATCGCCCACACTGC GGTTGGCCCACAAGAAGGTTAGGACGGGTCTAACAGAGGTATGCCAGGGT GCACGGCGAAATCTCGCCCGCATGACTGACTGCCAGCATTCACTCGGAAG TTTTGTTGTGTTTGTTATTATTGATTATCGCATTAGCTCACCACCCGTAT ATTATAGGCCGGGGAGGTGATTCTCGTGCTCCTTGCTTACAAGCGTGCGA CCGTGCGTTACGGCTCATGTACACGTCGATTTCGCCTGCGTGGGGGAGCC TCTCGCGAGAGAGAGACAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA GAGAGAGCGGAGACTCAGCAACACTCTTTCCCGACCTGACTCTTTCGCGC TGCTGAAAAGAGCGCATGTCCATCGTATTTGCGAATTAGTCCGCGCGTAA TTTATGGGTGCCCCTTGTGTGTGCGCGCGCGCGCGCGTGTGTGTGTTGGT GTGTGTAGATTGGTGAGCTTCTATCCTGGTCCTGGCCCGAGGCTACCTAC GTCTGCGTCCCACGCTCCTTCAGCAGCGACTTTCAATGTTAATATTTCTA CATACTTCACCCGTTAAGCGCACGACATATGATTGTACACGAATTGTCCT TCGCCTCCCGCCCACGCGGTCGATACCAACAACTCCCGGCTCCATCTTTG TGAGCCCTCTGGCACACCTTCTCCCCGACGTcCCCCCCCCCCCCTTCCTC CCCACCAAACAAATAAACAACATACAACAGACATGATTCTGTGGAAGCTT GACGCCATCGCGCGGCTCGGCTACGCGGCGTTCGCGCTAGACATGTTCGG GACCGGGCACGCCCTGTGGGACCGCCCCCAGTCCCTTGCGGCGAGACGGC CCATCACCGAGGACCGATCTCTCATGCAGGTGGTGTCGTGTGGAAACCAA CAACACTTTCAAAAAGGGCTCGTATAAGAGATGCAAATACTCAGCAATTT TGAGTGGGACAGAATTCCTTGGGCCGTATCATATACGGAGTAGAGGATAG AAGATTTCTTTGGGTGGCGGGGGAATAGGTAAGGATACGGTATATATGTG TTCAAGCGAGTGTGGGTTTGAAACGTATGTATAATAGGTAAATTCTGTCA GGATGATTCAAAGGCGAAGCCCGGCTGTGCCATCGTGGCGGGGGCAGGCA TCCCTCCTTGCTTTCAATGTCACTTGTGTGTTATCGAGACCGTTGGCAGA AATGCACTGCTGACAGATCAGAGCTGCCATTTTTTTAGCTGCGGATTACA AGGGTCTCTGACCGTCATGTCACTCGTGCCCTCGTTACCCCTTTGTCCCT CCATCCCATGCCATTCCGCAGGATCGCGCGATGGCAGCCGTCCGGACCCT CGGTCTGATGGAAGAGGTCGATCAAGATAGATTAGCGGCGGTGGGGTAAG CACGTTGCACTCTATATGCGATGAGGGCAGATGCTGTTTTGACTCTACGC CCATAAATAAGAGGCCAAGAGTATCTTTTACGCTGGGTATGCCGCTGTAA CTTGTACCCAAATTGTTTGTCCAGAGTATAGGATGCGGTACTTCGTCGGA CAAAGCGTGGAGTACGTGAACATCCTGCTCGTGAACACCGTCCAAGCGAA GAACCTCGCACACAGAAGAGCAGCGGCGCCATCGGGCTTTCATCAATCAC TGCTAGTCTGAATCAATCAAGAGCGTGTGAAAGGAGCCGCATGGATATTT GGGCTGTCAACGGGTGACCTGAACAAGATGCATGCTGTTGTTGCAGGTAC TGCTTCGGCGGCATGGCTATGTTGGATCTCGCGAGGATGACAGCACGGTC GAGCGACGGCGTAGACGACGATGACGTAACCGGAGATCCACGGCTGAAGG CCGTGGCGTCGCTGCACGGGATTTTAGCGCCGATTTTACCAGGGGCAGGG GGCGGGAACAACGTCGTTGGCGCGAAACCTGATGATGCTCTCATCGGCGT ACCGAGGGTGCTTGTCTTGCATGCAACGGCAGACCCGTTTGTGCCGCCAA AGCAGGTAAGCAAATGCGATTTTTTGTGAAAAGTACAAGTCGTTGTGTGA GTGAGGTACCGTAGGTGACATGAGATACCACACCCCCCTGGGTTGATTGA TGGTCAAAGCTCGATTACACAGCAGGACGAGTTTCAGTCAGTGCCGACCA TACTATGGTGGCGTTCGGAAGATCTCGCGTTGAGAGCTTTTCGGAAATAT ATCGCCTTTGGTATTGGCATTCTCTTCGTTGCGAAGGAATTGACCTGTAA AAAGTGGCTCAAGGGGTGTGGTATCTTGTGTCAAGCACGATATAATTCCA AAAGCGGGTGCGGTGGAACGCAACGCGACGAAACGAGTCTTAAGCGAGTC TTGACTCGACCAAACTAGGTTGTACCTATAATGAACAAAATATTGCGTGA TTCAGTCGGTTTTGAGCTGGCTTTTTGTTGCGGCGTTGGTGTTGATTTGA CCCACGGAGACATGTATCCGCTGCACGCGAGAGTGATAGGCGACCCGAAT CTCATACCCGATTACAGTACTCAGGCAACGGGCAGCCCACACAATTGAAA ATCCACCGCCACCCCAACCCCCACCCCAACCCCAACCCCCACCCATATCA TCTCATCTCATTTTATGATTGATCGATCAGATACAGGCGATGGAAGAAGA GTTCGCGCGGCGAGGGGCGAATGTCGAAATTGTGAGGTACGGCGGCGAGG CGTTGCACGCCTTCACGCGGCCTGAAAAGACCGGTCAGGCAGACAAGGAC GCCGGGCTGCAGTACTGCAAGCATGCCGATGAGGACTCGTGGCGGCGCGT TGTCGCCTTGCTACAGGAGGAGTTGAAGCAATAGCTCATGTGAATAAACG GCAGTTGTCGAGTCATTTGCTTTGTCGTGTTTCTTGACTGCTGTGCCAAA TCGTCTTCATGCTTTCAGTTGATGTGCGTTTTTTGTCGTCGGCTGGTTTT GAAGTTAGAAGAGGCGAAGGACGACTGTGAAGTGAAAGTCTAAGTTAACG TGTCGGCATGCACGACTTCAACGGAAATCTTGCTATAAGCGCCTCCGATG TACCGAATACCAACGCCTCTTCGTTCACGAGAACCGCCCCAACGGCTCCG GCGGCGCCCCTCACGCCCCCGACGCACTCCCATCTGTGATGCTGCCGCTG GTCGTGCTCTTCGCTGACAATCTGCCCCCCCCCGAGCATAACGTTGTCAC CGCTGACGTTGCCGGTGACTGCGCGTGGTGCCCAAATTTTGACGGTGGCA TCCCCCCCGCCCGTGGCAAAGACGCCGGAGGTAGACGAGCCGTGCACCGC CCATACCCCGTGCCTAGTGATGCAAGTTTTGGTTCGACGGAGCGTTCAGA TTAACGTCGAGCAAGTTTTTGTGGTACAATACTCGGACGATGCAAGAAAC TATAAGGAGTGCGTTGCTGGATCGATTGTACGCCTTTCGTTTTTTTTTCC GAGCATGAAAACGTGTGTACGGTAAACTCGTGCAGAGCGT
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Coding sequence (CDS) from alignment at P-littoralis_Contig143:92239..96478+

>mRNA_P-littoralis_Contig143.14.1 ID=mRNA_P-littoralis_Contig143.14.1|Name=mRNA_P-littoralis_Contig143.14.1|organism=Pylaiella littoralis U1_48|type=CDS|length=1149bp|location=Sequence derived from alignment at P-littoralis_Contig143:92239..96478+ (Pylaiella littoralis U1_48)
ATGTGCAGAAGGCTGGCCCTGGTGGCAACACTGCTGTCATTTTCTTTCAC
CTCTGCCCGAGCATGGCTGTGCGCGGTTAGGCCACCCTGCCGTGGTAGGA
ACGGCTTCTGCACGCGAACGAGGAGTATAAAACTAAATCAGCCCGCTGCA
AGAACAATGTCTTCCTGTAAGGACAGCATCGACGTTGAGGAGATATGGCC
CCACCTGGCAGGGAAGCGGACATGCGCTACCGAGGCCACCGGCAAGGTAA
TACGGGAAGCCTGGGCACAAGACACACGAAGTACTGCCGTGGGGTACGGC
ACTAGCATCTCTTCTTCTTCATGGAGCATCCGGCGCAGCGTCGTGCATTA
CACCCACGGCGAAACCGCCCTCGAAGGACTATTCGCGAGGCCCGAGGGCG
AGGGGCTTCCCGACAGGCTTCCAGGAGTGATTATCGCCCACACTGCGGTT
GGCCCACAAGAAGACATGATTCTGTGGAAGCTTGACGCCATCGCGCGGCT
CGGCTACGCGGCGTTCGCGCTAGACATGTTCGGGACCGGGCACGCCCTGT
GGGACCGCCCCCAGTCCCTTGCGGCGAGACGGCCCATCACCGAGGACCGA
TCTCTCATGCAGGATCGCGCGATGGCAGCCGTCCGGACCCTCGGTCTGAT
GGAAGAGGTCGATCAAGATAGATTAGCGGCGGTGGGGTACTGCTTCGGCG
GCATGGCTATGTTGGATCTCGCGAGGATGACAGCACGGTCGAGCGACGGC
GTAGACGACGATGACGTAACCGGAGATCCACGGCTGAAGGCCGTGGCGTC
GCTGCACGGGATTTTAGCGCCGATTTTACCAGGGGCAGGGGGCGGGAACA
ACGTCGTTGGCGCGAAACCTGATGATGCTCTCATCGGCGTACCGAGGGTG
CTTGTCTTGCATGCAACGGCAGACCCGTTTGTGCCGCCAAAGCAGATACA
GGCGATGGAAGAAGAGTTCGCGCGGCGAGGGGCGAATGTCGAAATTGTGA
GGTACGGCGGCGAGGCGTTGCACGCCTTCACGCGGCCTGAAAAGACCGGT
CAGGCAGACAAGGACGCCGGGCTGCAGTACTGCAAGCATGCCGATGAGGA
CTCGTGGCGGCGCGTTGTCGCCTTGCTACAGGAGGAGTTGAAGCAATAG
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