mRNA_P-littoralis_Contig143.108.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig143.108.1
Unique NamemRNA_P-littoralis_Contig143.108.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig143.108.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig143contigP-littoralis_Contig143:437703..440327 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size315
Hectar predicted targeting categoryother localisation
Exons2
Cds size183
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789670.6355257-UTR-P-littoralis_Contig143:437702..4377041680789670.6355257-UTR-P-littoralis_Contig143:437702..437704Pylaiella littoralis U1_48UTRP-littoralis_Contig143 437703..437704 +
1680789670.6683056-UTR-P-littoralis_Contig143:440197..4403271680789670.6683056-UTR-P-littoralis_Contig143:440197..440327Pylaiella littoralis U1_48UTRP-littoralis_Contig143 440198..440327 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789670.6475756-CDS-P-littoralis_Contig143:437704..4378011680789670.6475756-CDS-P-littoralis_Contig143:437704..437801Pylaiella littoralis U1_48CDSP-littoralis_Contig143 437705..437801 +
1680789670.65755-CDS-P-littoralis_Contig143:440111..4401971680789670.65755-CDS-P-littoralis_Contig143:440111..440197Pylaiella littoralis U1_48CDSP-littoralis_Contig143 440112..440197 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig143.108.1prot_P-littoralis_Contig143.108.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig143 437705..440197 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig143.108.1

>prot_P-littoralis_Contig143.108.1 ID=prot_P-littoralis_Contig143.108.1|Name=mRNA_P-littoralis_Contig143.108.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=61bp
MQGRRYLAICCDGKPPNVHTSNVSLSERAKKKGTRRNRSQDKEGCRRWGP
DRTSRRKKRF*
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mRNA from alignment at P-littoralis_Contig143:437703..440327+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig143.108.1 ID=mRNA_P-littoralis_Contig143.108.1|Name=mRNA_P-littoralis_Contig143.108.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=2625bp|location=Sequence derived from alignment at P-littoralis_Contig143:437703..440327+ (Pylaiella littoralis U1_48)
TTATGCAAGGTCGTCGGTACCTAGCTATCTGCTGTGATGGCAAGCCTCCA
AATGTCCATACCAGCAACGTGAGCTTGTCTGAGAGAGCAAAAAAAAAAGG
TGAAGTGCAACACATCGGAACTATTTCTCACCTCCTCCTCCAAGCAGACA
TCTTTCCGGGTAACCCGAGACATGGCACTACCCTTCTCATTCTCCCAAGT
CCCACATAGCACTACAAACAACAACAGTGGTAGCAGTAGTGCTGCTGATA
ACAGAAACGCGGCGAACCGTCCCTGAGAAAATGTGCGTGTGTGTGCTGTC
GCAAAGCTGCTTGCTTGCTGCTACTGATGATCTGATCTGATCTGTGCTGC
TGCTGCTGCTGCTGTGTGCGGCTTCTTCTTCTATTCCGCTTCTCTGATCT
GATGATATAGTACAGAGTTGCACAAACATCATATCACACCCTTGGTCTGT
CATGGCCCTGGGCCCTGGTTCGATGTACGAAGTACTTCGAAGTGTGTGTG
TTGTCATCCCATATTCTCTGGCACACTAGTCTGCAAACTACAGGCTAGGC
CCATCGACGGGGTCACACAGGAGGAAGGTCAACACAGGAGGAGTTACCCC
CACCTTCCTTCTGCGGTACATGCGTGAGATTTTTTCTCGCGAGCAGGGGT
CCGCGGTCCCTACCCTCGTCGGCGAAGAAGCCGAATCTGCTTTTACTGAC
GGCTAGAAGTATTTCGTTATGGTTGATGAGGTTTGTCTCGGTTATTTTTT
TTTTTGTTTGTCGGACTGTTTCCAATTTTTGTTCTTCTTTCGAGCCTGTT
ATCTTTTCTGTGGTATTTATTTGGTATTCTGGCCGCCACAGATGGTACCC
CAACGGTACCATATCTGACCTGACTGTGGGTAATCATAGTCCATGGTATA
TTTTATTTTTTCATTTTTTTTCCTCCTAGCACTATATGTGCCTGGTTTGT
GACCACGGGCTAGACTGCGGCGGTAGTGAGCTAATGTGAGAATCAACAAA
CAACAAACAAAAACCCTAAAGCACGAGCAGCAGCAGCAGTAGTAGCAGCA
GCACGGCAGCAGCCGCATCCGACCTTTCATATGGTCGTGTTCTTCGGCTT
TTGGGGCGAGCACGTCTCATTCGAAGAGGTGCTGACAGATGGTTTGACAC
TCCGACTGCTCTGCTGAGCTGTGGTGTCATCAAAGCGAAGAGGAGCTGTT
TTTGCGCTCTCTCTGTGTGGGTGTATTGGGACAAGTGTGTAAGAACGGCA
GCAGCAACCATCATTACTTTGTCCTTGAAACTACCAAGAAACTACTAGAT
ATCCACACACACAGCGAACGACCAACCGGCACAAAGGCATCAATCATTTA
ATTATAACAACAACATGGAAGACACGAAGAAACCACGAAAAAAGTTTTTC
AGACTTTTCCGGATTTTTTTCAAGTTATGAAAATCAAGTCATCGCGGCGG
GGGATTGCTCCAATAATAACAACGTGAAAAAAACGCGGGATCTAACTTGA
AAAACAAAACTAACTGTAACTTGAAAAACATCTGTTACGGGGAATCCGTC
TATTACTTGTATATATATTTTGTTCGTCAGATGTGGAGGACATGGATGGA
TATGTCCATCTGACGAACGAACAGTATCATCCGGTTCCGGTGTGCTTGTT
CCTGCTGCTTGCTGTCTATACTATAGTACGTCAAGTAGACTAGACTATAC
GTCCCATTGCCCGGAAAAAATGCCCGATTTTTCCCGGGTGAAGGTTTATT
CCTGTACAGTATGTGTGTTGTCATCCCATATTCTCTGGCACACTAGTCTG
CACCCTGCGGTTCAAACTACAGGCTAGGCCCATCGACGGGGCCACACAGG
AGGAAGGTCAACACAGGAGGAGTTACCCCCACCTTCCTTCTGCGGTACAT
GCGTGAGATTTTTTCTCGCGAGCAGAGATCCGCGGTTCCTACCCTCGTCG
GCGAAGCCGAATCTGCTCTTACTAGCAGCATAGCCGCTTTCAAAGTAGCA
AAGGATCACATTCACCGGGAATCGAACCCCCGTTCCTCTGCATCTAGTGG
TTAACGAGGGGACCACTAGTCCACCGGGGCGACGAGTGTATCAATCTGTA
ATTCTCTAACCCCTGGTGTGGAGGCCTTCGGCCTATTGAGCGTACCCATT
GCTGTGCTGCTGCTGCTGTTGCCTAGTGAAGGCTCTCGTAAAGAACGCAA
CCAGCCATCCACACCTGTTCTTCCCGCGGTTGACGCTACCACTACCGCCT
ACTACGTATAGAGGGCGCCACAACCATCCGCCTGCTACACAAAACCAATT
CGTCTTGTTCACGCACAATAATATAATAATAGTTCTTTCACACATACATA
TTTCAATCGTTGTTCACTTTCCATTTTGATTTGCTTGCACGGACGTCGGA
TGCCTGCAGGTACACGCCGAAACCGTTCACAAGACAAGGAGGGCTGTCGG
AGGTGGGGTCCAGACCGAACGTCACGCCGTAAAAAGCGGTTTTAGGCCTG
TCTATGGGTGACCATTTCAGGCCTGAAACTGTTTCAGGCATTAGACTGTT
TCGGACTGGGAAATTCTTTCGGAATTAACATTTTAGATTTAGCAATAAGG
AACGTACCCCCGAACGTACCCGACA
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Coding sequence (CDS) from alignment at P-littoralis_Contig143:437703..440327+

>mRNA_P-littoralis_Contig143.108.1 ID=mRNA_P-littoralis_Contig143.108.1|Name=mRNA_P-littoralis_Contig143.108.1|organism=Pylaiella littoralis U1_48|type=CDS|length=183bp|location=Sequence derived from alignment at P-littoralis_Contig143:437703..440327+ (Pylaiella littoralis U1_48)
ATGCAAGGTCGTCGGTACCTAGCTATCTGCTGTGATGGCAAGCCTCCAAA
TGTCCATACCAGCAACGTGAGCTTGTCTGAGAGAGCAAAAAAAAAAGGTA
CACGCCGAAACCGTTCACAAGACAAGGAGGGCTGTCGGAGGTGGGGTCCA
GACCGAACGTCACGCCGTAAAAAGCGGTTTTAG
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