mRNA_P-littoralis_Contig143.105.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig143.105.1
Unique NamemRNA_P-littoralis_Contig143.105.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig143.105.1 vs. uniprot
Match: D8LC34_ECTSI (Transmembrane protein 138 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LC34_ECTSI)

HSP 1 Score: 186 bits (471), Expect = 3.040e-54
Identity = 97/117 (82.91%), Postives = 102/117 (87.18%), Query Frame = 1 
Query:  112 VSRNATTTTGGDSILFKLKLFIMVFLMVFDMGLNSSVEHETFGTWDHGEGDDTILALILGFQLVVQVGTFASLFLMMFETYPFRVGLMGMLTSQYLTVYVINVVYFVMTICVYGYRV 462
            V+RNA+ TTGGDSILF++KLFIMVFL V DM LNSSVEHETFGTWD    D T L LILGFQLVVQVG FA LFLMMFETYPFRVGLMGMLTSQYLTVYVINV+YFV T CVYGYRV
Sbjct:    4 VARNASVTTGGDSILFRVKLFIMVFLTVVDMTLNSSVEHETFGTWDGTGRDGTALVLILGFQLVVQVGNFACLFLMMFETYPFRVGLMGMLTSQYLTVYVINVLYFVTTACVYGYRV 120
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BLAST of mRNA_P-littoralis_Contig143.105.1 vs. uniprot
Match: A0A6H5JIR8_9PHAE (Transmembrane protein 138 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIR8_9PHAE)

HSP 1 Score: 183 bits (465), Expect = 2.260e-53
Identity = 95/117 (81.20%), Postives = 101/117 (86.32%), Query Frame = 1 
Query:  112 VSRNATTTTGGDSILFKLKLFIMVFLMVFDMGLNSSVEHETFGTWDHGEGDDTILALILGFQLVVQVGTFASLFLMMFETYPFRVGLMGMLTSQYLTVYVINVVYFVMTICVYGYRV 462
            V+RNA+ TTGGD ILF++KLFIMVFL V DM LNSSVEHETFGTWD    D T L LILGFQLVVQVG FA LFLMMFETYPFRVGLMGMLTSQYLTVY+INV+YFV T CVYGYRV
Sbjct:    4 VARNASVTTGGDCILFRVKLFIMVFLTVVDMTLNSSVEHETFGTWDGTGRDGTALVLILGFQLVVQVGNFACLFLMMFETYPFRVGLMGMLTSQYLTVYIINVLYFVTTACVYGYRV 120
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BLAST of mRNA_P-littoralis_Contig143.105.1 vs. uniprot
Match: A0A836CBT6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CBT6_9STRA)

HSP 1 Score: 90.1 bits (222), Expect = 6.220e-16
Identity = 50/113 (44.25%), Postives = 73/113 (64.60%), Query Frame = 1 
Query:  139 GGDSILFKLKLFIMVFLMVFDMGLNSSVEHETFG--TWDHGEGD-DTILALILGFQLVVQVGTFASLFLMMFETYPFRVGLMGMLTSQYLTVYVINVVYFVMTICVYGYRVLR 468
            GG    F+ KL +++ LM+ D+ LN SVE++++   T D G  D DTIL L+ G QL+VQV    +LF+MMF+T+PF+ GLMG++   Y  VY +N  Y   T  +YGYR+ +
Sbjct: 1288 GGADAWFQAKLTVLMLLMLADVLLNGSVEYDSYSQLTLDGGGDDVDTILVLVHGVQLLVQVAVLLTLFIMMFDTWPFKAGLMGLVAVHYKWVYAVNGAYITATALLYGYRLAK 1400
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig143.105.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LC34_ECTSI3.040e-5482.91Transmembrane protein 138 n=1 Tax=Ectocarpus silic... [more]
A0A6H5JIR8_9PHAE2.260e-5381.20Transmembrane protein 138 n=1 Tax=Ectocarpus sp. C... [more]
A0A836CBT6_9STRA6.220e-1644.25Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig143contigP-littoralis_Contig143:418585..422689 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog164328.Phyra74730
PFAMsTMEM138
Model size1061
Max annot lvl4776|Peronosporales
Hectar predicted targeting categoryother localisation
Exons4
Evalue9.17e-05
EggNOG OGs2E45E@1|root,2SB3Q@2759|Eukaryota,3QG83@4776|Peronosporales
Ec32 ortholog descriptionTransmembrane protein 138
Ec32 orthologEc-20_004270.1
DescriptionTransmembrane protein 138
Cds size384
COG categoryS
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig143.105.1prot_P-littoralis_Contig143.105.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig143 418684..422111 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789674.8543131-UTR-P-littoralis_Contig143:418584..4186831680789674.8543131-UTR-P-littoralis_Contig143:418584..418683Pylaiella littoralis U1_48UTRP-littoralis_Contig143 418585..418683 +
1680789674.9015763-UTR-P-littoralis_Contig143:422111..4226891680789674.9015763-UTR-P-littoralis_Contig143:422111..422689Pylaiella littoralis U1_48UTRP-littoralis_Contig143 422112..422689 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789674.865077-CDS-P-littoralis_Contig143:418683..4187211680789674.865077-CDS-P-littoralis_Contig143:418683..418721Pylaiella littoralis U1_48CDSP-littoralis_Contig143 418684..418721 +
1680789674.873944-CDS-P-littoralis_Contig143:419501..4196541680789674.873944-CDS-P-littoralis_Contig143:419501..419654Pylaiella littoralis U1_48CDSP-littoralis_Contig143 419502..419654 +
1680789674.882467-CDS-P-littoralis_Contig143:419817..4199891680789674.882467-CDS-P-littoralis_Contig143:419817..419989Pylaiella littoralis U1_48CDSP-littoralis_Contig143 419818..419989 +
1680789674.8913553-CDS-P-littoralis_Contig143:422090..4221111680789674.8913553-CDS-P-littoralis_Contig143:422090..422111Pylaiella littoralis U1_48CDSP-littoralis_Contig143 422091..422111 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig143.105.1

>prot_P-littoralis_Contig143.105.1 ID=prot_P-littoralis_Contig143.105.1|Name=mRNA_P-littoralis_Contig143.105.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=128bp
MRPGVSRNATTTTGGDSILFKLKLFIMVFLMVFDMGLNSSVEHETFGTWD
HGEGDDTILALILGFQLVVQVGTFASLFLMMFETYPFRVGLMGMLTSQYL
TVYVINVVYFVMTICVYGYRVLRRYTT*
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mRNA from alignment at P-littoralis_Contig143:418585..422689+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig143.105.1 ID=mRNA_P-littoralis_Contig143.105.1|Name=mRNA_P-littoralis_Contig143.105.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=4105bp|location=Sequence derived from alignment at P-littoralis_Contig143:418585..422689+ (Pylaiella littoralis U1_48)
CTTACGTGTCAGCGGGAGAGATGCCCCTGCCGTTGATAACATTGCCTGAA
TTGGCGTGATCCCGGATAAGCTCCTCACCTAGTAAGGGGATCTTCCCTGA
TGAGGCCTGGTGTGTCGAGGAATGCCACGACAACAACGTGAGGCATGCAT
ACGTAGTCATTTGGGGCAGGAAGAAGTTGGAAATTGTGTACAAGTGAGGC
GATATCGTTGAGATAGCGCTGACGCATCTCGCTTTAATGCCGCAGAAGTT
TACGACCAGCAAAAGTCAGCGTGCTACTTCTCTACTCCCCTACAATATAT
CATTAGACTCGCGACACCGCGACACCCGCACAAACAGCTCTCAAGTTTTA
CATTATACCGGTGCGTGATTAATCTCGCCGCATTTTTGGCACCGCCCACC
GTCTCCAAACTCCAGCTGTGGGTGCGTGCTGGACGAAACCTTACGCATCA
ATTTGTGCACACATGGGCATTAGAAGTACTCGTGCATTCGCTCGCGTTCC
AGGCTTGATTGACATACGCAGATCGCCAACGCCCACAATTTGGGGTATGT
GTACAGGAGGCAACGAGCGGGGAACCACGCAGCCTCTTTCACAGCTACAG
CAGACGCCCGCTGACAAGAAACGTGAAATTTGGGTCGAGGCTCAATTTCT
TCTTTCGCCACCACCGGTGGCCAAAGGTCTTTGTATAGTGTTTAGTGTAG
GATCGACGGCTGAGCTCTATTTCTTACCCCGAATTTCTTATTTTTCGGGG
ACAGGTGAGCTTCATTTTCTTATGAAAATTTTTCTACTTTACAACCCGGT
CCAAGTGCTACCAACTGCCGAAGTATGCCATATGCAAAAGCACGCATCCA
ATGATGAAGACCACGAACACTTATTGTGTGCACGCGTTATCGTAATTGTG
TCGGTCCGTCTTTCCAGCGGGGGCGACTCTATCCTATTCAAGTTAAAGTT
GTTCATCATGGTATTTCTGATGGTCTTCGACATGGGTCTCAACAGCAGCG
TGGAGCACGAAACATTCGGCACGTGGGATCATGGGGAGGGGGACGACACT
ATCCTCGCCCTCATCCTTGGGTAAGGACGAGAGTCATCGTAAGACAGCAG
GGATTTTGAAGATGCAGAGTAGCTTGGCGGCGCCGTAGTGAGTGTTGACT
GCAGGTGGCTGATAGCCCGTGTGCTTTGTCTATATCCCATCAGATGGAGA
CACTCATACCTTCCCGCCCTCTGTTACCAACAGGTTTCAGCTGGTCGTCC
AGGTTGGGACGTTCGCGAGTCTGTTCCTGATGATGTTCGAGACTTACCCG
TTTCGAGTGGGGCTGATGGGCATGCTGACATCGCAGTACCTGACGGTGTA
CGTCATCAACGTCGTGTATTTCGTCATGACGATTTGCGTCTACGGCTATA
GAGTGGTGAGAAATCCACTTGATCGCCTCAACGAGCAACGTCGTTGCTGC
AGCAGAGTAGGACGATCTTTCGTTGGACAAAACCAAAAGTGCAGGTTTTA
ATTCCACGGTACAACGAGGCTACTGCACGCTTTCAAGAGCGTAACGTAGG
TGGAATATGTATTTCTTTATTGCATGTGGCCCAAGGTTTAAATAAATATG
ATCGGCCCGCCCCGGATTCGGTTTCTTTCGTGTTTAATGGCAAGGTGTAG
GTACGCGCCGTACGTATAAAAATTCGCGGCCAATCGGTAACATAGCTCGT
AGATATTTGAGAGCGCCAGCCACTCTTCTTTTCGCAATGCAACGCAGCTC
CTCATCTGACGACAGCCAATTTTCTCGCGTCCTGGCACGACTATTCTCAG
CTCAGTTTCACAAAATGGTTCAAGAGACCTACAGTAGTAGTGTGGTTCTT
GGTGTTTGTCTTCCTCAAAACCGAAGCCAAACAATTCCCCCAAGGCCGTC
GCAAAACAATTGGTGAACTCAAATAGTCCCTGGAATGTGTTGTTAACACA
TCGTAGCGAAAGATGGCAAAGAAACGGACGCACAGCAACAGTTGTTGGTC
CTGCATCATCCATTGCCTTGTTCAATCAAGCAGCTTTCAAGCAGGCGCCG
TCGAAACAATTTCTGTAACCATGCTGCATGTGAAAACCTACACAACATCT
GTGATCTTCTGTGTGTACGCCCCCTTCACGCGCTCTCGTCATCCATGGGC
TTCTCGGACTTGATTTTCATTTGTTTGACAGACATCTATGGTGCAAAGCG
AAAGTGACATGGGCATCTGGCAGGTGTGGGACTTGCGCGGCTACTTGCCC
CTGTCAATCGTTCACAAGATAGGTGAATACCACCGTACGATAACCGAAGC
CCCGCCGACCCTGATTGCGAAGTCTCTCCCTCTTCCCACGACCGAACAGG
CACCCAATCGCGCATATCGACGAAGCAACAAGCTACTTTCTTCGTGGTAC
ACGTGCAGTAGCAACAAGCTGCTTTCCCCCGATCCCGATCCCAGCGAGGC
GTAGTTGCGTGGGTAGATGCACGTACAGTGTGTGTGCGTCCTGTGATTTA
ACGAAAACGGCTTGCGTTAAGTTGCTCTAACGGGCTTTACATACAGTATG
CTGATTTCCTTCGCGGCCACACTCGCCCTCCCCGAAATAACAACAATACA
CACAAATATGACGACGGGCTGAGTAAGAGGCCTCTACAAATCATAAAGCA
ATGGAACATGTCAGCCTTCCGTCGCCCTCGCACACGCGTTGGCTGGGCGA
ACATTTGTGTATTCACGTTGTCAAAGCACCGTTTTTTCCCGATCTTCCTT
CTCTCCTCACCATCAAGACACCGGATGTTTACTGCTAGATGGCATGACTC
CAACCCTTGTAGACAAATCTTCCCACGGAATGTTAGAGGAATATCCCGTA
TTTCCTTTGTACTTCCAAAAATGTATACTGCAATCCTCGTATCATAGAAC
CAGTGCAGATCGAGTCGGAAGAACCTCTGTAGCGCCGACCTCCTCCGTCA
AGACATGCACTTCGAAGTAGATCGCAAACTGTTCCCCGCCTGGGCATCAA
ATATGCAATCGCATATGCCACAGGTCCGTCTACCGTCGTGCGAACAAGTA
CTGGTTCGGTCAAGTCATAGACAAGTCGTCGACGCCCACCCGCATCTAGG
AACTTTTTTTATTCGCCCCAAGAGTTCGGCTCCAGCAAATACGCCTCAAA
TGTAGCTCTTTGCAACCTCCGCGCGTATTCCCCAGATGGAATGGCCGTCG
TTGTCTTCAGTGTTGACGACTACCAGTTACATCTGTATACACCTTCTTCC
CGCGGATCTACGTCACCATAGCTGTTGGGTTGGTGCAAGATTGATCGAAT
GCAGGTCGCCTCAAAACGTGACAATTGCGCGCTGAATATCGGCATTCCAT
GAATAAAATGGGGGGAAGCAAAGCACAGACGACCTACTTTTGTAATGGCC
CCCCGCTTGAACCTTATTTTTTGGGCAAACACAATATTCAACATTGCAAC
GTGTGTGGCCAACGTGCGCCTCCCCCCCCCCCCCAACCCTGCACTACCCG
TCACAGTTGCGACGGTATACTACGTGACAAACATTCGCGCGGCGCTACTT
CTAGGGGACCCAATGTTTTACAGCAAACAGGCATGGGTGGGGATGTACTT
CGATCGGGTAGGAGGGCTGGGTGGCGGCGGTTCAACGGGCGAGCACCAGG
GCAAGGGGGAGGGCAATCAGCAACCCGCCCCGGAGAGCGGCGATGCTCGA
TTGTTTGGGGCAACGGCGGAGATGCTGGGCGATGTATCTGGTGGCTTTTT
GTAGCAGCACGAGTAAAGAAATCGGGTGGGGCGGAACGTCAAGAACACCG
ACCAAAGTGTAACCAGTTCTGGTCTTCATCGCGAGACAACCCTCGATATG
TTCTTCGTAAATTGATCGAGACCGAATATCTCAGTGATACGCTTGCGGTC
TTGTTTTCATATTGTAAACGATACAACCTATAAAAGCAGGGCTTCATCGC
TCAGCGTGATGCCCAAGTTCAAAATTAGGAGCTGAGTGTGTCATGTACAT
GCCTATCCCTCCTCCCATCGTTTGTGTCTAATCAACGCGCAGTAGCACAA
CACCTCATCCCCCATGTTTTTGGGAGCCAGATCTTGATCTTGATCTTGAC
TGTTG
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Coding sequence (CDS) from alignment at P-littoralis_Contig143:418585..422689+

>mRNA_P-littoralis_Contig143.105.1 ID=mRNA_P-littoralis_Contig143.105.1|Name=mRNA_P-littoralis_Contig143.105.1|organism=Pylaiella littoralis U1_48|type=CDS|length=384bp|location=Sequence derived from alignment at P-littoralis_Contig143:418585..422689+ (Pylaiella littoralis U1_48)
ATGAGGCCTGGTGTGTCGAGGAATGCCACGACAACAACCGGGGGCGACTC
TATCCTATTCAAGTTAAAGTTGTTCATCATGGTATTTCTGATGGTCTTCG
ACATGGGTCTCAACAGCAGCGTGGAGCACGAAACATTCGGCACGTGGGAT
CATGGGGAGGGGGACGACACTATCCTCGCCCTCATCCTTGGGTTTCAGCT
GGTCGTCCAGGTTGGGACGTTCGCGAGTCTGTTCCTGATGATGTTCGAGA
CTTACCCGTTTCGAGTGGGGCTGATGGGCATGCTGACATCGCAGTACCTG
ACGGTGTACGTCATCAACGTCGTGTATTTCGTCATGACGATTTGCGTCTA
CGGCTATAGAGTGTTGCGACGGTATACTACGTGA
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