mRNA_P-littoralis_Contig143.1.1 (mRNA) Pylaiella littoralis U1_48
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Overview
Homology
BLAST of mRNA_P-littoralis_Contig143.1.1 vs. uniprot
Match: D8LIY5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIY5_ECTSI) HSP 1 Score: 439 bits (1129), Expect = 6.540e-120 Identity = 614/1542 (39.82%), Postives = 768/1542 (49.81%), Query Frame = 1
Query: 1 IWDNPPPVRATARSAGSKRNRTSGHAGFSSPAA-HLWGDAEGSSFTTSDDQQVPGRRPSTAPAVPVSYMDGGQARKRSRSPGGQNXXXXXXXXXXXSPTSAHRRSARNSTGLERGGGGNTAEFNHLRRRSGFVPVRALLLLPDWRIGHEVSAVVVSRFDSVSFLRAAIQADIVRDTSTANTTTLDNA-GFRQG--RRGSXXXXXXXXXGCPPFAFSYADGVAVDRGQEERLSVKDIAVTSSPAASSTSSAAGEVFLDQRWEEDITSDDSERKELRVFLRACDPRTQQPTADNGAGGVLHRWEDLQGGSWGNEATLRGPSSGSPESSFSK-GGSPVPSSSSFFLGATSPTSFDSDA-VGDQRRGQGYGMFGPNGGVALGTGNG-VSSSSFTTGGVRQHQLRSQQQSRRFSVSFDEAKAARRRTIQEQVTRLAASKVTLITKIFRGYRERVLFRERLDRHRGASAIQLCVRRRAATKELGHRTRRREKAVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQLRYDKTEMAEAARTREEHLAREXXXXXXXXXXAREMARLARENEEEDAIIRIQTLARVSGAKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRAAQIEAXERRKRKK-----AAAQMRKENRRKEEASIKIEALARGRRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXALCKPTKEC-----DRKMNRLDLYDTPGDGRKYGNVPGIDSAENDQVVIPPCEQRQAGALS-RRKRSSVNHVEFLTGRQARDEIVALVARGVDEHVKSFVTSQTAVTRCEARAGKEAVAERGTPATSPQTGGD--DGSDNGMKK---DRLVYVSAEHHKKGFQSEPRLDSSHSGSFAEEASEEQ-RDTAWKSDFA--------LDDESGSTLADIGGILAR--DDQEHGEETEVPEGGSEEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEGREILKCDFAPGDDLGDAMTSTTKSIRTEGGDEHKGGTPTRSSEGEEEMWESDFALDSLKQPGTEEDARLDTVQGLEARGD--------GTQMQSAGVAAEGVPAEACWAGVETESASPP-----VDDTNAESSNSDPEPFVAVDDL-VSEPVLDGPSSSEEDKSAVVISVK---TDQEVQDTVPTGDQDVDKLQSAGVAAEGEA----SEACSPEAEKEEAPPAADDTNADSPSLELEPAAATAAAAPDD--VLFEAGGVVQGILDSGNKDVDQLQSAGIAAEGEPEEACHPRAEKEAQSPIVND----------TNADSQTSEPEASVAGDDVRSKPVLDGPSMLD------EEASAVA-----------NSAEGDMAVQGVVASGDEVVDRLQPAGVAPEGESEEAWTTEAENEASSPAVDDTNADSPSEPK----AATAGDAALSESVLDRPSLLGGETIALRNSNDRSPPSVEEVQENGAEVAEGLTVSCGETGAPAPTVLDKGADEVPPPAAPDDKQDAPAAVEE 4362
IW+NPPP RAT RSAG R+R HAG SS +A +LWGDAE SS T + Q VPGRRP TAPAV + DGGQ KRSR PG N SP HR ++ S N A ++H+RRRS VPVRALL+LPD +GHEVS V +S FDSVSFLRAAIQAD+ RDT A T+ ++A G R G RRG CPPF F YADGVA+D GQEERLSVKDIAV + A+ ++A G DQ ++ E+RVFLRAC+P T+Q A +G GGVLHRWE LQGG+W EA LRG SSGSP+S+FSK GG+ SSS F S +SFD +A G QR G G G GGV LG G G VSSSS TTGGV+ H SRR SVSFDEAK ARRRTIQEQV LAASKVTLITK+FRGYR R+LFRERL+ H+ A IQ C RR+AA ELG R RR+K XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX R + AE AR +E RE XXXXXXX +E AI+RIQ+LAR GAK XXXXXXXXXXXXXXXXXXXXX X AAAQ+R+ +R+ +AS KI XXXXXXXXXXXXXXX XXXXXX + + + DLY + R G G +++ND+ IPP + +Q G LS + +S HVEFLTG A D++ A +A V+E + SFV Q + R EA K TP T P+ D DGS G+ D ++ + + +P LDSSHS S ++++E ++ AWKSDF L DE L G +AR ++++ EE V E E+ K DF + + I G + H EEE W SDFA L+ PG + + R + + L+ D GT+ Q V AEA +GV+TE AS V+D + ++ P+ AV + V + G ++EE A SV T + + + + Q G A E E S A AE A + P+ + A A A P+D VL AG +V + S K+ L++ E P + H R VN TN +TS+ +A ++G+ +S + G S LD EE A A +S D+ +Q + +S ++V L+P GV E T AEN DS PK A + D AL++ L RP LG E + PS+ E V G+ +S G G APT +++G V P A PD+++D PA VE+
Sbjct: 26 IWENPPPARATTRSAGPIRSRIPRHAGLSSSSAGNLWGDAEISSNTLGNGQ-VPGRRPRTAPAVQTMF-DGGQTGKRSRFPG-YNRDRLPELSRSTSPP-PHRSTSNTSAIFGHDSNHNHAGYSHVRRRSDLVPVRALLILPDSSVGHEVSTVDMSAFDSVSFLRAAIQADVARDTHWAEETSANSAAGHRHGNGRRGRGDL-------CPPFTFCYADGVAIDPGQEERLSVKDIAVDPALQATGAAAAVGRSDSDQ-----LSDQGGGSGEMRVFLRACEPLTEQG-ASHGGGGVLHRWESLQGGAWNTEAYLRGSSSGSPDSAFSKHGGADGSLSSSTFQNPASSSSFDPNAGYGAQRGGNGSGSSRLPGGVVLGAGAGSVSSSSLTTGGVQPHH------SRRISVSFDEAKDARRRTIQEQVMLLAASKVTLITKVFRGYRARILFRERLELHQRACKIQQCARRKAAKNELGRRAYRRDKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRNEAK--AELARKEKEEEERELAAXXXXXXXXXXXXXXXXXDE---AIVRIQSLARARGAKKEAIVRRDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAAQVRELKKRRYDASAKIAXXXXXXXXXXXXXXXXXXXXXXILIQRTARGRRGRSRAKILADQHRREAHAEENAXXXXXXXXXXNSSRTLLHRLETDTSTSDLYGIENNPRDSGYAGG--ASDNDKGSIPPYKHQQGGDLSVQAGHASSKHVEFLTGLSAPDDVAARLALDVNEQINSFVVVQAQIRRLEAGVAK-------TP-TGPEEKSDEEDGSSRGVDNHGDDDSPPEGSDEQEHPSEFDPTLDSSHSASAEQQSAEGGGQEEAWKSDFEXXXXXXFLLHDEPVDALVVAKGTMARVGEERDTKEEGVVDRRAEEGQDVFKSGFSLGGEPESGLAAPAEENQPAQNEAHAEEPEVPGQATEEVFKSDFVLDNGSAGTLAVDAADINMMGDESH-----------EEEEWRSDFA--PLETPGEDNELRGEGLDELDKVSDVNEEPSVSGTEHQLKKAV---VSAEAEKSGVKTELASSDGDCSAVEDDDDRKISTPPQSPEAVQEAGVVQQEGPGAETAEETSVAEEPSVPPLPTMMSENEPLMLQHEPSTEPQLPGAAQEQEGDRTYSSAACDNAEPAPMVSAKGTLDEQQPTGGVSGARGVAPATPEDDHVLVLAGEIVA-LAVSEAKEALLLEAKKARPESSPHDDTHRRISLSGHFIDVNTGILEWTGRDGTNGKGETSD-KAEISGETSKSSDIASGDSGLDRSTPQGEEMPAAAIGGHHPTPGVHSSPNLDLRLQDLPSSREDV--ELRPTGVGSE------MATMAENLEGERGPTSRTIDSTEPPKLEQDAGDSADGALADLGLGRPGSLGEEMAETATKEGDALPSLVLPDEQQDGVDTGVEISSGVEGGSAPTAVEEGEQAVSPLAVPDEERDVPAPVEQ 1503 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig143.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 1
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig143.1.1 >prot_P-littoralis_Contig143.1.1 ID=prot_P-littoralis_Contig143.1.1|Name=mRNA_P-littoralis_Contig143.1.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=2488bp IWDNPPPVRATARSAGSKRNRTSGHAGFSSPAAHLWGDAEGSSFTTSDDQback to top mRNA from alignment at P-littoralis_Contig143:5796..23547- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig143.1.1 ID=mRNA_P-littoralis_Contig143.1.1|Name=mRNA_P-littoralis_Contig143.1.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=17752bp|location=Sequence derived from alignment at P-littoralis_Contig143:5796..23547- (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig143:5796..23547- >mRNA_P-littoralis_Contig143.1.1 ID=mRNA_P-littoralis_Contig143.1.1|Name=mRNA_P-littoralis_Contig143.1.1|organism=Pylaiella littoralis U1_48|type=CDS|length=7464bp|location=Sequence derived from alignment at P-littoralis_Contig143:5796..23547- (Pylaiella littoralis U1_48)back to top |