mRNA_P-littoralis_Contig1427.10.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1427.10.1
Unique NamemRNA_P-littoralis_Contig1427.10.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1427.10.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1427contigP-littoralis_Contig1427:14261..18966 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size182
Hectar predicted targeting categoryother localisation
Exons2
Cds size180
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789670.1345792-CDS-P-littoralis_Contig1427:14260..143151680789670.1345792-CDS-P-littoralis_Contig1427:14260..14315Pylaiella littoralis U1_48CDSP-littoralis_Contig1427 14261..14315 -
1680789670.1462338-CDS-P-littoralis_Contig1427:18841..189661680789670.1462338-CDS-P-littoralis_Contig1427:18841..18966Pylaiella littoralis U1_48CDSP-littoralis_Contig1427 18842..18966 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1427.10.1prot_P-littoralis_Contig1427.10.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1427 14261..18966 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1427.10.1

>prot_P-littoralis_Contig1427.10.1 ID=prot_P-littoralis_Contig1427.10.1|Name=mRNA_P-littoralis_Contig1427.10.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=60bp
VLKLATAGTPEIGSLDSGRSGNDGKFDVEQEKFSSIDAQGQQALVSATEG
VHDSSTTTAV
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mRNA from alignment at P-littoralis_Contig1427:14261..18966-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1427.10.1 ID=mRNA_P-littoralis_Contig1427.10.1|Name=mRNA_P-littoralis_Contig1427.10.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=4706bp|location=Sequence derived from alignment at P-littoralis_Contig1427:14261..18966- (Pylaiella littoralis U1_48)
GTGTTGAAGCTTGCTACGGCAGGCACACCGGAGATCGGCAGCCTCGACTC
CGGCCGCTCTGGAAATGACGGCAAATTCGATGTCGAGCAAGAAAAGTTCT
CCTCGATTGACGCTCAGGGGCAACAAATGGGAAAGACCGGGATTGCAATA
TCATTTGCCATGCCACATATAAACGGCTTCCGTGGCACACCGGGCCGGGT
AGACCCCGTCTTGGCGGAGCTATCCGAAATTAACATCGCTATTCAGGCTT
AGGGTTATCGATATTGAAATTGTCATCACAAGACCAAAAAAAATTTGGCA
TTGTTTTCATGGTGGGTGCGTGCGCGTTGTTTTCGGCGTCATGGAACTGT
ATCGAAATCAGGCTGTTTCCAGCGAACGGGGTGCGTGGAAGATAAAACTA
CCGTAAATACATACTCCGGAGTATAAGCTTTTGTGTTTTCTTCTTCGGAA
AATTCTCTCAATTCCTTGGGTCGAAAACGGCCGGAGATGACAGCTGACTG
TTTTTATGTGAGCGGTTCAGCGAACGGCCCAAAAAACACGTCAGGTCCAA
CAGCTGTTTGGTGAACAGTAACAAAGCAACAGCTGTTGACGGGTGAACAG
ACCGACGTCAGCAGCACCAGCTGGTGATTGGCCCCACAAAAAACGTCAGC
ACGCCAGCTGATGAATGTTTTACATGCGCCTGATTCCACAAACAGGCGGC
TAGACTACATATATGGACGCACGCAACGTACGTGTACATAAAGCACAGCA
GTAGTATAGTCATGCACACGTGTGTACATAGCAAGCAAGCCCAGATCGCC
TCGCATCTCACTTTTGCCGCGCTCGATGTCCAGCATCGCGTACCTGATGC
TACACTGCTGTGACAACCAGTCAGAGCGAAAAAGAAAAGTCAAACGCGCT
GCGTACGGACGGGTGACTGCTGTGTGAGACCTGTTTTTACTTTGCGATAG
TAATAGTGAGACAACAACCAGATAGATAGACAAATGCTGCTTTCAGTGCT
TCCGCGCCGGAGCTCCATATCTATCTGCACATGTCTGAGAGTGTCGGATT
GGCTGGTTGAGGCTTGCGGTTGTGAGCTCGTGGCATGAGAGCGGGGATTA
AACCCTTTGACCCCCCACGGGTCTGAAAAAAATAATCATGGAGCCAAAAA
TTAACTTAATCCCGGTGCGCCGATGATTGGCGAATGGTGGGCAGTCTCAA
AAAAAAAAAGGCACTGACGTCTCGCTGGCTCTGTCCGGTGAAAAAAGGGT
GTGACTTGGTTATACACAGAAATCTGTCCCCGATTTGCCCTGAAAAAAAT
GGGGACAGATTCCAGTCTAAAGCTACACAAACCTTTTTGGCGGGGTCAAC
TACATAAAAGTTGTTTGTTTAGTTTTGCAGAATGTTTACTTCAAAGGGAT
ACTGCTGTATGCCAGGTAGCACGCAGCGACACCGCCACTTAGCATGGCAG
ATCAGGGTACCCCGCTCGACAACCACACAGCAGTAGGGTTCCACTCCGCA
AGGTTGTACCCGCGCACGACACTCAATCAGGGTCTATAGCATCTCATCAG
CAGCAGGCTCACCAACCCATCGCACGACACATCATCAGCTAGCTGCTTGC
TGCAGCATGCACAGCAGCAGCAGTACAATAATAGTTGCAGAAATAAGGGT
ATGTATGTGAGTGCAGCAGTACGTCAGCATCAGCGTTTCATATGATATGA
GCCGTAGTCTAACATATAGTCTATGTATCATGTCTTATGTATGTGTGCAT
GTTGTGTGCAATGTAGGGAGGGTTGCCGGCATGAAGTGTGATGCAACAAG
ACGATCGCCGTTGTGTCTACCATGCTGTCGAGGGAAGAGAAAATCACACA
ACAAACCTAAGTATTCACCAGATTGAGAGCAAACTGTCTAATTGAGAACG
AGATGACAGCCGGGCGCTCTTGAACCTCTCCCATAGTAATAGTAAAAAAC
AAATGTGGCACCATTTGGAGGCAGCCAACTATTGGTTGATCCACACACAT
TCCATCGAGCTCACGGAACCACACCCAAAATACCTGTAGATACGCGCCTT
CAAAACCCAAGTAAAAAAAAAAAGTTGTCCCCAAATTGTCCCCAATTGGG
ATTGGGGGGTTCAAAGGGTTAACGGAAGGCCAAGAGCCCGTATTAACGGA
AGGCCAAAAAAAACGAAATAGCGAAAACGAAAACGAGGTTGAGCTCTGAT
TGGTCGGGAAAAAAAAACGAAAGAGGCGTGTTTTCGTTTCAACGTCCTCC
GGGGAGGCGTTCCTTCGTTTTCGATTTCGCAAAAATAAGGTGTTTCGGAC
CTTTTTTTTTTTGCGAAAACGAAAACGAAATGCACGGAGTTTGGTAACCT
CGGAGGCTTGCCCATGAGCCTCCCAGGCAGCGAACTCCTTCACACAGACT
GCGACTGCGGTACACGGCGGTGCAACAGGCACCAACCAACCCCAACAGAG
CGAGGCCCAATCCACACACTACAGCAGCGCAGCAGACAGCGCCAAGCCGT
CATACCCGCCAGTCAGTGCAACAGACAGCACACCACGGCCGTCTACGATA
CCCACACACTGACACGATGCATTCCACCGCGTTATTTGAAATTGGGCCCC
GCGCGTTCTGGGTTTACATCATTTTTGGCGTTATCTCCTCTATTCCGCTG
CTCCAGCTCCTCGCAGCAGAAATGCGTTAATACCGAAATGGAGTTTTTTA
TCTTTTTCCCAGAAGAACGGAGTTATTTCGTTTTTGTTTCCGCTATTTCG
TTTTTTTTGAGCGGGGATTAACAGAAGGCAAAAAAAAACGAAATAGCGGA
AACAAAAACGAAATAACTTCGTTCTTCAGGAAAAAAAAAAAAAAAAACTC
CATTTCGGTATTAACGCGTTTCTGCTGCGAGGAGCTGGAGCAGCGGAATA
GAGGAGATAACGCCAAAAATGATGTAAACCCAGAACGCGCGGGGCCCAAT
TTCAAATAACGCGGTGGAATGCATCGTGTCAGTGTGTGGGTATCGTAGAC
GGCCGTGGTGTGCTGTCTGTTGCACTGACTGGCGGGTATGACGGCTTGGC
GCTGTCTGCTGCGCTGCTGTAGTGTGTGGATTGGGCCTCGCTCTGTTGGG
GTTGGTTGGTGCCTGTTGCACCGCCGTGTACCGCAGTCGCAGTCTCTGTG
AAGGAGTTCGCTGCCTGGGAGGCTCATGGGCAAGCCTCCCAGGTTGTTAC
CAAACTCCATGCATTTCGTTTTCGTTTTTTGCTTAAAAAAGGTCCGAAAC
ACCTTATTTTTGCGAAATCGAAAACGAAGGAATGCCTCTCCGGAGGACGT
TGAAACGAAAACAATCCTCTTTCGTTTTTTTTTCCCGACCAATCAGAGCC
CAATTTAGTTTTTGTTTTCGCTATTTCGTTTTTTTTGGCCTTCCGTCAAT
CCCGGCTCTGTGAAAGCGGTGCCCTGGAGAAATGAAAAGTTCGTGTGTTT
TGCGGCGAGACGAGCGTGTGTATCCCATAATCTTTCCGGCTCTCCGCGCT
CCGCCATACCACACAGACATTGCCACTTCTCTGCAGGAGGCATCCCCTGA
TGTGCATGCCACTGTCGATCACGAGCGTAATTTTGAGAGGCACCACTTCC
CTCCGCCCGGAGTTATCCCTATCGTTGGGGTTGATGTTGTGCTGCAAAGC
TGGGTCAACAATTAAAATAAAATTGGGGGTCGTCGGTGGTGTGGATTTCC
TAGGTCCTGGAGGGGTGGGGGGCGGGTGTAAAAAAAAACAGCTTTTAACG
AGGTGGGGGGGGGTTCAACCGTGAACCGTTACAGGCAGTAAGTAGTCTCC
CGTTTTTTATTTGTCTCTCCAACACACCACAGCAGGCGCTTCCGCAAAAT
AAATGTGTCTTCGGCTTAGTTAGTTAGTCTTGAATCACCCCCTATCGCAC
TCTTTATACCCTAATTCATTAGCTCACTCTGAAAGGGGATCTTGTATATG
TACATATTTTTTTCGCGGCTGCAATCCGTCCCACGGGTGAAAGGGTGCCG
TTGGGAATTGCAAAGTTCAGGGGCGGTGCTGGCATACACCGCGGAGTCAA
ACGTGCTTTCCAGCCGACCTCTCTTCTCCCTCACATTTAACTTTTATTTT
TTACGTCACGCCTGACACCCCGCCTCTCCGAATCCTGGACCTGCCCGGTG
AACTGTTCGGCAATCTCTCCTATACTGCAGTCGACGGGCATTCGCGCCCG
TTCGTCACAATAAACAAAATTACCTTTGCTGCGGTGCTACAGTCAAGAAG
ACATCTCCTGCAAAGCACACTATCGTTGCCGTAAGAAAAGCGTCCCGTAT
CCATTTGCCATACTACATTTAGGAAAAGTAAACCTCGTCTGGCACAAGAA
CGCCCAGCGTGCGTCTGATGCGAACAATGACGTGTCATTCAATCGGGCAA
ACAGTCACCTAATATAGTGGTGAGAGAAAGCGATGTGAGAGAAAAAAGCG
TACCACGTGTTGTACGTCGTCCGTGTCTGACTTCCGTAGTATGGGGTATA
TAATTTGTGGGCAAAAACACCCCCCCCCCTGGCCCCAAGGAAGACAAGGG
TGCGACGGTGCCGCGCAACTTTAAGAGTGACGTGTACAAGTTGTAGTGAT
ACGTTTCCCAACCGCCATTACTTTCGTTCTATCGCCGCGCCTACCCTTGC
AGGCGCTCGTGTCGGCCACGGAGGGCGTTCACGACTCGTCGACAACCACT
GCCGTC
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Coding sequence (CDS) from alignment at P-littoralis_Contig1427:14261..18966-

>mRNA_P-littoralis_Contig1427.10.1 ID=mRNA_P-littoralis_Contig1427.10.1|Name=mRNA_P-littoralis_Contig1427.10.1|organism=Pylaiella littoralis U1_48|type=CDS|length=180bp|location=Sequence derived from alignment at P-littoralis_Contig1427:14261..18966- (Pylaiella littoralis U1_48)
GTGTTGAAGCTTGCTACGGCAGGCACACCGGAGATCGGCAGCCTCGACTC
CGGCCGCTCTGGAAATGACGGCAAATTCGATGTCGAGCAAGAAAAGTTCT
CCTCGATTGACGCTCAGGGGCAACAGGCGCTCGTGTCGGCCACGGAGGGC
GTTCACGACTCGTCGACAACCACTGCCGTC
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