mRNA_P-littoralis_Contig1426.2.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1426.2.1
Unique NamemRNA_P-littoralis_Contig1426.2.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1426.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1426contigP-littoralis_Contig1426:6057..6890 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size834
Hectar predicted targeting categoryother localisation
Exons1
Cds size576
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789670.0813828-UTR-P-littoralis_Contig1426:6056..62731680789670.0813828-UTR-P-littoralis_Contig1426:6056..6273Pylaiella littoralis U1_48UTRP-littoralis_Contig1426 6057..6273 +
1680789670.1013713-UTR-P-littoralis_Contig1426:6849..68901680789670.1013713-UTR-P-littoralis_Contig1426:6849..6890Pylaiella littoralis U1_48UTRP-littoralis_Contig1426 6850..6890 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789670.0920055-CDS-P-littoralis_Contig1426:6273..68491680789670.0920055-CDS-P-littoralis_Contig1426:6273..6849Pylaiella littoralis U1_48CDSP-littoralis_Contig1426 6274..6849 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1426.2.1prot_P-littoralis_Contig1426.2.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1426 6274..6849 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1426.2.1

>prot_P-littoralis_Contig1426.2.1 ID=prot_P-littoralis_Contig1426.2.1|Name=mRNA_P-littoralis_Contig1426.2.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=192bp
MSEQQPEQHSPVVAAAAVAAAAAAGDAVDQDGNPGGDIQEQAGEGGGAQG
DPVPLPPPAGLADVLQQLVASQQAFLAAAGPRATAAAAAAATAATAAAAS
AAAAADTAAATSAAATTAAATAAATRPPRRWGHQCPARGGEFVDGCAAPG
RPGCPADRCWRSPAAIAATTPAAAAATTLTAWTISGCGRPN*
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mRNA from alignment at P-littoralis_Contig1426:6057..6890+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1426.2.1 ID=mRNA_P-littoralis_Contig1426.2.1|Name=mRNA_P-littoralis_Contig1426.2.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=834bp|location=Sequence derived from alignment at P-littoralis_Contig1426:6057..6890+ (Pylaiella littoralis U1_48)
GAGCTGGAGCGTCCCCTCCCAATACAGACAGGTCTTGGGTCATGCATTCA
TTGTGTTGGAAGAAGGCAAGAAGAAGAGAGTGCCTACTACACCTAACTGT
TGCCGGGCCATAGAGAAGAGACTGCTGTGCGTTAGGTGGGTGCTAGCAGT
AGTGGTGGAAAAAATTCCTGCGGGAAGCAAGGGTTCAATCGTTGTTGTTG
GTTTGTTCGACTTTCTCATGAGTGAACAGCAGCCAGAGCAGCACTCGCCA
GTGGTGGCGGCTGCGGCCGTCGCCGCGGCAGCTGCTGCCGGAGACGCGGT
TGATCAAGACGGAAACCCCGGAGGGGACATTCAAGAGCAGGCCGGGGAGG
GTGGAGGCGCCCAAGGAGACCCTGTTCCTCTCCCCCCTCCGGCCGGTCTC
GCCGACGTGCTCCAGCAACTCGTGGCGTCGCAACAAGCCTTCCTTGCAGC
AGCAGGTCCAAGAGCTACAGCAGCAGCAGCAGCAGCAGCAACAGCAGCCA
CCGCCGCAGCCGCCTCAGCAGCAGCCGCAGCCGATACAGCAGCCGCAACA
TCAGCAGCAGCAACAACAGCAGCCGCCACCGCAGCAGCAACCCGTCCACC
CCGTCGCTGGGGACATCAATGCCCAGCCCGCGGGGGAGAATTTGTTGATG
GGTGTGCAGCCCCTGGCCGACCCGGGTGCCCCGCAGATAGATGTTGGCGA
TCTCCTGCGGCAATTGCTGCAACAACACCAGCAGCAGCAGCAGCGACTAC
ACTTACCGCCTGGACCATCTCCGGCTGCGGCAGACCCAATTAAAAGTGCT
GGTATGAAGCTGGCGGCGAAGCGGCAGGCGGACC
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Coding sequence (CDS) from alignment at P-littoralis_Contig1426:6057..6890+

>mRNA_P-littoralis_Contig1426.2.1 ID=mRNA_P-littoralis_Contig1426.2.1|Name=mRNA_P-littoralis_Contig1426.2.1|organism=Pylaiella littoralis U1_48|type=CDS|length=576bp|location=Sequence derived from alignment at P-littoralis_Contig1426:6057..6890+ (Pylaiella littoralis U1_48)
ATGAGTGAACAGCAGCCAGAGCAGCACTCGCCAGTGGTGGCGGCTGCGGC
CGTCGCCGCGGCAGCTGCTGCCGGAGACGCGGTTGATCAAGACGGAAACC
CCGGAGGGGACATTCAAGAGCAGGCCGGGGAGGGTGGAGGCGCCCAAGGA
GACCCTGTTCCTCTCCCCCCTCCGGCCGGTCTCGCCGACGTGCTCCAGCA
ACTCGTGGCGTCGCAACAAGCCTTCCTTGCAGCAGCAGGTCCAAGAGCTA
CAGCAGCAGCAGCAGCAGCAGCAACAGCAGCCACCGCCGCAGCCGCCTCA
GCAGCAGCCGCAGCCGATACAGCAGCCGCAACATCAGCAGCAGCAACAAC
AGCAGCCGCCACCGCAGCAGCAACCCGTCCACCCCGTCGCTGGGGACATC
AATGCCCAGCCCGCGGGGGAGAATTTGTTGATGGGTGTGCAGCCCCTGGC
CGACCCGGGTGCCCCGCAGATAGATGTTGGCGATCTCCTGCGGCAATTGC
TGCAACAACACCAGCAGCAGCAGCAGCGACTACACTTACCGCCTGGACCA
TCTCCGGCTGCGGCAGACCCAATTAA
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