mRNA_P-littoralis_Contig1423.3.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1423.3.1
Unique NamemRNA_P-littoralis_Contig1423.3.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig1423.3.1 vs. uniprot
Match: A0A6H5KL66_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KL66_9PHAE)

HSP 1 Score: 221 bits (563), Expect = 1.680e-62
Identity = 117/278 (42.09%), Postives = 158/278 (56.83%), Query Frame = 1
Query:    1 VVVEGDEETHSFMVNLKKSQPTKYEWLLSVPGAWRLLLHASKALIGRYYAAGLESVCEVLGADDKHMFAAKNYRRSHHFLLVMYEGLWSGVVDRYL--------------EERGTPETGLQTNE---------------MNDKFVPWFKRQCTINDTMCFWSGFLLNDMPAYLAIRFGVRASNFKLRVAGIRQFAPFFAGTGKNRYQPLCIEFLTQLSRMPDDDIPVLGKLTSASWDKPP---FASVALDEMMEMFNRVIKQSLTKVTVPYIMKLGMI 738
            V+VEGDEET+  MV LKK  P KY+W+L  PG W ++LH +KALI RYY AG+E V + LG D+KH  A   YRRSHH L V YE +W  V+++Y+               +  TP  G    E               + +  VPW + +   + T+  W+ FLL+D P YL  R G R +N+KL VAG R+ AP FA TGKNRYQ L    L  L+RM D+D+  +  L S+ ++      F +V LDE MEM NR +KQ+L ++T  Y++KL  I
Sbjct:  108 VLVEGDEETYRIMVQLKKGNPEKYKWMLPHPGGWHIMLHMTKALISRYYGAGVEVVAKALGGDNKHAAAGSKYRRSHHLLTVTYEAMWWAVIEKYIVAKKEEAASPAMTTADSATPSNGASAGEGAPGAGGRARGVPVNVEEDVVPWLREEAKEHKTLRLWATFLLDDYPRYLMFRTGGRTANYKLCVAGFRKIAPLFAATGKNRYQQLASWHLLNLARMTDNDLEAVSCLFSSQYNTKNYRNFNNVFLDEFMEMENRTVKQNLGRITQAYMVKLPRI 385          
BLAST of mRNA_P-littoralis_Contig1423.3.1 vs. uniprot
Match: D7FTC0_ECTSI (Similar to solute carrier family 35, member F4 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTC0_ECTSI)

HSP 1 Score: 216 bits (551), Expect = 9.560e-61
Identity = 113/257 (43.97%), Postives = 155/257 (60.31%), Query Frame = 1
Query:    1 VVVEGDEETHSFMVNLKKSQPTKYEWLLSVPGAWRLLLHASKALIGRYYAAGLESVCEVLGADDKHMFAAKNYRRSHHFLLVMYEGLWSGVVDRYLEER------GTPETG--LQTNEMNDKFVPWFKRQCTINDTMCFWSGFLLNDMPAYLAIRFGVRASNFKLRVAGIRQFAPFFAGTGKNRYQPLCIEFLTQLSRMPDDDIPVLGKLTSASWDKPP---FASVALDEMMEMFNRVIKQSLTKVTVPYIMKLGMI 738
            V+VEGDEET+  MV LKK  P KY+W++  PG W ++LH +KAL+ RYY AG+E V + LG DD H  A   YRRS+H L V YE LW  V+++Y+  +      G P      Q  ++    VPW K Q   + T+ FW+ FLL+D P YL  R G R +N+KL VA  R  AP FA TGKNRYQ L +  +  L+RM D D+  +  L S+ ++      F +V L E+ EM NRV+KQ+L ++T  Y+ +L +I
Sbjct:  360 VLVEGDEETYRIMVQLKKGNPEKYKWMVPHPGGWHIMLHVTKALMTRYYGAGIEVVAKALGGDDVHAAAGSKYRRSNHLLTVTYEALWWVVIEQYVAAKQKEAREGPPGAAPPAQPVDIQGDVVPWLKEQAKEHKTLRFWATFLLDDYPTYLMFRTGGRTTNYKLCVAVFRNIAPLFAATGKNRYQQLALWHMLTLARMTDSDLEAVATLFSSQFNTKNYRNFNNVFLGEIQEMMNRVVKQNLGRITQAYMTRLPLI 616          
BLAST of mRNA_P-littoralis_Contig1423.3.1 vs. uniprot
Match: A0A6H5LAS0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LAS0_9PHAE)

HSP 1 Score: 185 bits (470), Expect = 7.280e-50
Identity = 106/278 (38.13%), Postives = 142/278 (51.08%), Query Frame = 1
Query:    1 VVVEGDEETHSFMVNLKKSQPTKYEWLLSVPGAWRLLLHASKALIGRYYAAGLESVCEVLGADDKHMFAAKNYRRSHHFLLVMYEGLWSGVVDRYLE--------------ERGTPETGLQTNE---------------MNDKFVPWFKRQCTINDTMCFWSGFLLNDMPAYLAIRFGVRASNFKLRVAGIRQFAPFFAGTGKNRYQPLCIEFLTQLSRMPDDDIPVLGKLTSASWDKPP---FASVALDEMMEMFNRVIKQSLTKVTVPYIMKLGMI 738
            V+VEGDEET+  MV LKK  P KY+W+L  PG W ++LH +KALI RYY AG+E V + LG DDKH  A   YR                                     +  TP  G    E               + +  VPW + +   + T+  W+ FLL+D P YL  R G R +N+K+ VAG R+ AP FA TGKNRYQ L    L  L+RM D+D+  +  L S+ ++      F +V LDE MEM NR +KQ+L ++T  Y++KL  I
Sbjct: 1418 VLVEGDEETYRIMVQLKKGNPEKYKWMLPHPGGWHIMLHMTKALISRYYGAGVEVVAKALGGDDKHAAAGSKYRXXXXXXXXXXXXXXXXXXXXXXXXXXXXAASPAMTTADSATPSNGASAGEGAPGAGGRARGVPVNVEEDVVPWLREEAKEHKTLRLWATFLLDDYPRYLMFRTGGRTANYKVCVAGFRKIAPLFAATGKNRYQQLASWHLLNLARMTDNDLEAVSCLFSSQYNTKNYRNFNNVFLDEFMEMENRTVKQNLGRITQAYMVKLPRI 1695          
BLAST of mRNA_P-littoralis_Contig1423.3.1 vs. uniprot
Match: A0A6H5L6D9_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6D9_9PHAE)

HSP 1 Score: 170 bits (431), Expect = 1.200e-44
Identity = 89/248 (35.89%), Postives = 139/248 (56.05%), Query Frame = 1
Query:    4 VVEGDEETHSFMVNLKKSQPTKYEWLLSVPGAWRLLLHASKALIGRYYAAGLESVCEVLGADDKHMFAAKNYRRSHHFLLVMYEGLWSGVVDRYLEERGTP-ETGLQTNEMNDKFVPWFKRQCTINDTMCFWSGFLLNDMPAYLAIRFGVRASNFKLRVAGIRQFAPFFAGTGKNRYQPLCIEFLTQLSRMPDDDIPVLGKLTSASWDKPPFASVALDEMMEMFNRVIKQSLTKVTVPYIMKLGMIVE 744
            ++ GDEET+  M ++   +P +Y  +   PG W LLLH +KA++ RY+ AG+E V + LG D        NYRR+HH +   +    +   + YL+   TP +  ++ +E+ D  V W   +   + T   W  FLL+D PAY+A R  +R  NF+LR+ G+R+ AP F  TGK++YQ L ++ LT++SR   +D+ V+ +L S S     FA + LDE  E+ NR+ K    ++    I KL  I +
Sbjct:  914 ILGGDEETYKHMYHVMAQEPREYRQVRRYPGDWHLLLHMAKAMLRRYWGAGVEFVAKDLGTDGSKSGEGSNYRRAHHHITAFWAAFMALCREEYLKSLSTPGDRPVEEDEVVDGVVRWIVARTESHKTFAVWKQFLLHDYPAYIAFRTALRTGNFRLRLEGLRRIAPIFFITGKDKYQFLVVDHLTEVSRYSRNDMRVVSELFSVSLGPDTFARIGLDERQEVSNRLYKTLTKRILSSTIEKLAPIAQ 1161          
BLAST of mRNA_P-littoralis_Contig1423.3.1 vs. uniprot
Match: A0A6H5K3J0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3J0_9PHAE)

HSP 1 Score: 166 bits (419), Expect = 4.140e-44
Identity = 90/243 (37.04%), Postives = 134/243 (55.14%), Query Frame = 1
Query:    4 VVEGDEETHSFMVNLKKSQPTKYEWLLSVPGAWRLLLHASKALIGRYYAAGLESVCEVLGADDKHMFAAKNYRRSHHFLLVMYEGLWSGVVDRYLEERGTPETGLQTNEMNDKFVPWFKRQCTINDTMCFWSGFLLNDMPAYLAIRFGVRASNFKLRVAGIRQFAPFFAGTGKNRYQPLCIEFLTQLSRMPDDDIPVLGKLTSASWDKPPFASVALDEMMEMFNRVIKQSLTKVTVPYIMKLG 732
            ++ GDEET+  + +++K +   Y  L   PG W LLLH +KAL+ RY+ AG+E V + LG D+       NYRR+HH L+VM+E   S      L     P   +   + +   V W K++   + T   W  FLL+D PAY+A R  +R  +F LR+  +R+ AP F  TGK+RYQ L ++ L ++SRM + D+ V+ KL S S  K   A + LDE   + NR+ K    ++   +I KL 
Sbjct:  202 IIAGDEETYRVLYHIQKQERMAYRQLRRYPGDWHLLLHMAKALLKRYWGAGVEFVAKDLGTDNSKSSEGSNYRRAHHHLVVMWEARMSLCPKMCLP----PGEDMTAEDADSMVVAWIKKRAAEHKTFALWQQFLLHDFPAYMAFRTALRTGDFMLRLDALRRIAPIFYITGKDRYQFLVVD-LAEMSRMSESDLKVIVKLFSVSLSKDACARLGLDERQGLTNRMYKTLTKRILPSFIHKLA 439          
BLAST of mRNA_P-littoralis_Contig1423.3.1 vs. uniprot
Match: D7FIA9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIA9_ECTSI)

HSP 1 Score: 165 bits (417), Expect = 2.920e-43
Identity = 88/248 (35.48%), Postives = 136/248 (54.84%), Query Frame = 1
Query:    4 VVEGDEETHSFMVNLKKSQPTKYEWLLSVPGAWRLLLHASKALIGRYYAAGLESVCEVLGADDKHMFAAKNYRRSHHFLLVMYEGLWSGVVDRYLEERGTP-ETGLQTNEMNDKFVPWFKRQCTINDTMCFWSGFLLNDMPAYLAIRFGVRASNFKLRVAGIRQFAPFFAGTGKNRYQPLCIEFLTQLSRMPDDDIPVLGKLTSASWDKPPFASVALDEMMEMFNRVIKQSLTKVTVPYIMKLGMIVE 744
            ++ GDEET+  M ++    P +Y  +   PG W LLLH +KA++ RY+ AG+E V + LG D        NYRR+HH +   +    +   + YL+   TP +  ++ +++ D  V W   +     T   W  FLL+D PAY+A R  +R  NF LR+ G+R+ AP F  TGK++YQ L ++ LT++SR   +D+ V+ +L S S     FA + LDE  E+ NR+ K    ++    I KL  I +
Sbjct:  155 ILGGDEETYKHMYHVMAQDPREYRQVRRYPGDWHLLLHMAKAMLRRYWGAGVEFVAKDLGTDGSKSGEGSNYRRAHHHITAFWAAFMALCREEYLKSLPTPSDRPVEEDKVVDGVVRWIVARAESRKTFAVWKQFLLHDYPAYIAFRTALRTGNFGLRLEGLRRIAPIFFITGKDKYQFLVVDHLTEVSRYLRNDMRVVSELFSVSLGPDTFARIGLDERQEVSNRLYKTLTKRILSSTIEKLAPIAQ 402          
BLAST of mRNA_P-littoralis_Contig1423.3.1 vs. uniprot
Match: A0A6H5K2D4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2D4_9PHAE)

HSP 1 Score: 165 bits (417), Expect = 6.480e-43
Identity = 84/207 (40.58%), Postives = 121/207 (58.45%), Query Frame = 1
Query:    1 VVVEGDEETHSFMVNLKKSQPTKYEWLLSVPGAWRLLLHASKALIGRYYAAGLESVCEVLGADDKHMFAAKNYRRSHHFLLVMYEGLWSGVVDRYLEERGTPETGLQTNEMNDKFVPWFKRQCTINDTMCFWSGFLLNDMPAYLAIRFGVRASNFKLRVAGIRQFAPFFAGTGKNRYQPLCIEFLTQLSRMPDDDIPVLGKLTSASW 621
            V+VEGD+ET+SFMV  K+++P   +WL+  PG W +LLHASKAL+  YY AG+E++  +LGA+DKH     NYRR+HH L V+ EG    V                          W +++ + + T+  W+ FLL D PAYLA+R G R  N+ + V  +R+ AP    TGK  Y  LCI  LT L+R+P +++  +G L +AS+
Sbjct:  470 VLVEGDQETYSFMVKAKQTKPEVCKWLIPHPGGWHILLHASKALLQLYYGAGVEAIARLLGAEDKHAADGSNYRRNHHLLTVV-EGQEVSVT------------------------AWLRQRASTHQTLKLWTPFLLEDYPAYLALRMGGRTGNYPMCVMALRKLAPMVGATGKTNYVTLCINHLTTLARIPANNLETIGTLFTASF 651          
BLAST of mRNA_P-littoralis_Contig1423.3.1 vs. uniprot
Match: A0A6H5JDT2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDT2_9PHAE)

HSP 1 Score: 156 bits (394), Expect = 2.780e-40
Identity = 88/244 (36.07%), Postives = 132/244 (54.10%), Query Frame = 1
Query:    4 VVEGDEETHSFMVNLKKSQPTKYEWLLSVPGAWRLLLHASKALIGRYYAAGLESVCEVLGADDKHMFAAKNYRRSHHFLLVMYEGLWSGVVDRYLEERGTPETGLQTNEMNDKFVPWFKRQCTINDTMCFWSGFLLNDMPAYLAIRFGVRASNFKLRVAGIRQFAPFFAGTGKNRYQPLCIEFLTQLSRMPDDDIPVLGKLTSASWDKPPFASVALDEMMEMFNRVIKQSLTKVTVP-YIMKLG 732
            ++ GDEET+  + +++K +   Y      PG W L LH +KAL+ RY+ AG+E V + LG D+       NYRR+HH L+VM               RG     +   + +   V W K++   + T   W  FLL+D PAY+  R  +R  +F LR+  +R+ AP F  TGK+RYQ L ++ L ++S M + D+ V+ +L S S  K   A + LDE  E+ NR+ K +LTK  +P +I KL 
Sbjct:  216 IIAGDEETYRVLYHIQKQERVAYRQFRRYPGDWHLHLHVAKALLKRYWGAGVEFVAKDLGTDNSKSSEGSNYRRAHHHLVVM------------ASTRGD----MTAEDADSMVVAWIKKRAAKHKTFALWEQFLLHDFPAYVTFRTALRTGDFMLRLDALRRIAPIFYITGKDRYQFLVVDHLAEMSTMSESDLKVIAELFSVSLSKDACARLGLDERQEVANRMYK-TLTKWILPSFIHKLA 442          
BLAST of mRNA_P-littoralis_Contig1423.3.1 vs. uniprot
Match: A0A6H5JYE1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYE1_9PHAE)

HSP 1 Score: 153 bits (387), Expect = 5.730e-39
Identity = 84/248 (33.87%), Postives = 131/248 (52.82%), Query Frame = 1
Query:    4 VVEGDEETHSFMVNLKKSQPTKYEWLLSVPGAWRLLLHASKALIGRYYAAGLESVCEVLGADDKHMFAAKNYRRSHHFLLVMYEGLWSGVVDRYLEERGTP-ETGLQTNEMNDKFVPWFKRQCTINDTMCFWSGFLLNDMPAYLAIRFGVRASNFKLRVAGIRQFAPFFAGTGKNRYQPLCIEFLTQLSRMPDDDIPVLGKLTSASWDKPPFASVALDEMMEMFNRVIKQSLTKVTVPYIMKLGMIVE 744
            ++ GDEET+  M ++   +P +Y  +   PG W LLLH +K ++ RY+ AG+E V + LG D        NYRR+HH  +  +    +     YLE   TP +  ++ + + D  V W   +   + T   W  FLL+D   Y+A R  +R  NF+LR+ G+R+ AP    TGK++YQ L  + LT++S    +D+ V+ +L S S     FA + LDE  E+ NR+ K    ++    I KL  I +
Sbjct:   25 ILGGDEETYKHMYHVMAQKPREYRQVRRYPGDWHLLLHMAKVMLRRYWGAGVEFVAKDLGTDGSKSGEGSNYRRAHHHAMAFWAAFIALCRQEYLESLPTPGDRPVEEDNVVDGVVRWIVARAESHKTFAVWKQFLLHDYHEYIAFRTALRTGNFRLRLEGLRRIAPILFVTGKDKYQFLVADHLTEVSGYSRNDMRVVSELFSVSHGPDTFARIGLDERKEVSNRLYKTLAKRILSSTIEKLTPIAQ 272          
BLAST of mRNA_P-littoralis_Contig1423.3.1 vs. uniprot
Match: A0A6H5L1K3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1K3_9PHAE)

HSP 1 Score: 151 bits (382), Expect = 3.890e-38
Identity = 86/250 (34.40%), Postives = 133/250 (53.20%), Query Frame = 1
Query:    4 VVEGDEETHSFMVNLKKSQPTKYEWLLSVPGAWRLLLHASKALIGRYYAAGLESVCEVLGADDKHMFAAKNYRRSHHFLLVMYEGLWSGVVDRYLEERGTPETGLQTNEMNDKFVPWFKRQCTINDTMCFWSGFLLNDMPAYLAIRFGVRASNFKLRVAGIRQFAPFFAGTGKNRYQPLC---IEFLTQLSRMPDDDIPVLGKLTSASWDKPPFASVALDEMMEMFNRVIKQSLTKVTVPYIMKLGMIVE 744
            ++ GDEET+  M ++   +P +Y  +   PG W LLLH +KA++ RY+ AG+E V + LG D        NYRR+HH +       W+  +   +EE          +++ D  V W   +   +     W  FLL+D PAY+A R  +R  NF+LR+ G+R+ AP F  TGK++YQ L    ++ LT++SR   +D+ V+ +L S S     FA + LDE  E+ NR+ K    ++    I KL  I +
Sbjct:   25 ILGGDEETYKHMYHVMAQEPREYRQVRRYPGDWHLLLHMAKAMLRRYWGAGVEFVAKDLGTDGSKSGEGSNYRRAHHHITAF----WAAFMALPVEE----------DKVVDGVVRWIVARAESHKAFAVWKQFLLHDYPAYIAFRTALRTGNFRLRLEGLRRIAPIFFITGKDKYQFLVFLVVDHLTEVSRYSRNDMRVVSELFSVSLGPDTFARIGLDERQEVSNRLYKTLTKRILSSTIEKLAPIAQ 260          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1423.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KL66_9PHAE1.680e-6242.09Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FTC0_ECTSI9.560e-6143.97Similar to solute carrier family 35, member F4 n=1... [more]
A0A6H5LAS0_9PHAE7.280e-5038.13Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L6D9_9PHAE1.200e-4435.89Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K3J0_9PHAE4.140e-4437.04Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FIA9_ECTSI2.920e-4335.48Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K2D4_9PHAE6.480e-4340.58Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JDT2_9PHAE2.780e-4036.07Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JYE1_9PHAE5.730e-3933.87Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L1K3_9PHAE3.890e-3834.40Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1423contigP-littoralis_Contig1423:7617..8366 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7FIA9
Model size750
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons1
Evalue4.78e-44
EggNOG OGs2D5KK@1|root,2SYVY@2759|Eukaryota
Cds size750
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789669.809365-CDS-P-littoralis_Contig1423:7616..83661680789669.809365-CDS-P-littoralis_Contig1423:7616..8366Pylaiella littoralis U1_48CDSP-littoralis_Contig1423 7617..8366 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1423.3.1prot_P-littoralis_Contig1423.3.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1423 7617..8366 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1423.3.1

>prot_P-littoralis_Contig1423.3.1 ID=prot_P-littoralis_Contig1423.3.1|Name=mRNA_P-littoralis_Contig1423.3.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=250bp
VVVEGDEETHSFMVNLKKSQPTKYEWLLSVPGAWRLLLHASKALIGRYYA
AGLESVCEVLGADDKHMFAAKNYRRSHHFLLVMYEGLWSGVVDRYLEERG
TPETGLQTNEMNDKFVPWFKRQCTINDTMCFWSGFLLNDMPAYLAIRFGV
RASNFKLRVAGIRQFAPFFAGTGKNRYQPLCIEFLTQLSRMPDDDIPVLG
KLTSASWDKPPFASVALDEMMEMFNRVIKQSLTKVTVPYIMKLGMIVEHQ
back to top

mRNA from alignment at P-littoralis_Contig1423:7617..8366+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1423.3.1 ID=mRNA_P-littoralis_Contig1423.3.1|Name=mRNA_P-littoralis_Contig1423.3.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=750bp|location=Sequence derived from alignment at P-littoralis_Contig1423:7617..8366+ (Pylaiella littoralis U1_48)
GTTGTGGTGGAAGGGGATGAAGAGACGCACTCCTTCATGGTGAACCTCAA GAAAAGTCAGCCGACGAAATACGAGTGGCTGCTCTCTGTGCCGGGAGCGT GGCGCTTGCTTCTGCACGCGTCGAAGGCTCTCATAGGACGATACTACGCC GCCGGGTTGGAGAGTGTATGCGAAGTTCTGGGCGCTGATGACAAGCACAT GTTCGCCGCCAAGAACTATCGACGTAGCCACCACTTTCTGCTTGTCATGT ACGAGGGACTTTGGTCGGGCGTGGTAGACCGCTATCTCGAGGAACGCGGG ACACCTGAGACGGGACTCCAGACCAACGAGATGAACGACAAGTTTGTTCC CTGGTTCAAGCGCCAATGCACTATCAACGACACAATGTGCTTTTGGTCGG GTTTTCTCCTCAACGACATGCCGGCCTATCTCGCTATTCGGTTTGGGGTT AGGGCTTCAAACTTCAAGCTGCGAGTCGCTGGGATCCGGCAGTTTGCGCC TTTCTTCGCGGGCACGGGAAAAAATCGGTACCAGCCGTTGTGTATCGAAT TCCTCACGCAACTATCACGGATGCCCGATGACGACATACCGGTTTTGGGG AAGCTGACGTCGGCGAGCTGGGATAAGCCTCCGTTCGCGTCCGTTGCTCT AGACGAAATGATGGAGATGTTCAACCGCGTCATCAAGCAGTCCCTGACGA AGGTCACCGTGCCGTACATCATGAAGCTGGGCATGATTGTGGAGCACCAG
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig1423:7617..8366+

>mRNA_P-littoralis_Contig1423.3.1 ID=mRNA_P-littoralis_Contig1423.3.1|Name=mRNA_P-littoralis_Contig1423.3.1|organism=Pylaiella littoralis U1_48|type=CDS|length=750bp|location=Sequence derived from alignment at P-littoralis_Contig1423:7617..8366+ (Pylaiella littoralis U1_48)
GTTGTGGTGGAAGGGGATGAAGAGACGCACTCCTTCATGGTGAACCTCAA
GAAAAGTCAGCCGACGAAATACGAGTGGCTGCTCTCTGTGCCGGGAGCGT
GGCGCTTGCTTCTGCACGCGTCGAAGGCTCTCATAGGACGATACTACGCC
GCCGGGTTGGAGAGTGTATGCGAAGTTCTGGGCGCTGATGACAAGCACAT
GTTCGCCGCCAAGAACTATCGACGTAGCCACCACTTTCTGCTTGTCATGT
ACGAGGGACTTTGGTCGGGCGTGGTAGACCGCTATCTCGAGGAACGCGGG
ACACCTGAGACGGGACTCCAGACCAACGAGATGAACGACAAGTTTGTTCC
CTGGTTCAAGCGCCAATGCACTATCAACGACACAATGTGCTTTTGGTCGG
GTTTTCTCCTCAACGACATGCCGGCCTATCTCGCTATTCGGTTTGGGGTT
AGGGCTTCAAACTTCAAGCTGCGAGTCGCTGGGATCCGGCAGTTTGCGCC
TTTCTTCGCGGGCACGGGAAAAAATCGGTACCAGCCGTTGTGTATCGAAT
TCCTCACGCAACTATCACGGATGCCCGATGACGACATACCGGTTTTGGGG
AAGCTGACGTCGGCGAGCTGGGATAAGCCTCCGTTCGCGTCCGTTGCTCT
AGACGAAATGATGGAGATGTTCAACCGCGTCATCAAGCAGTCCCTGACGA
AGGTCACCGTGCCGTACATCATGAAGCTGGGCATGATTGTGGAGCACCAG
back to top