mRNA_P-littoralis_Contig1423.2.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1423.2.1
Unique NamemRNA_P-littoralis_Contig1423.2.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1423.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1423contigP-littoralis_Contig1423:4450..4622 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog400682.PAC_15713984
Model size175
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Evalue0.000134
EggNOG OGs2D5KK@1|root,2SYVY@2759|Eukaryota
Cds size171
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789669.7727542-CDS-P-littoralis_Contig1423:4451..46221680789669.7727542-CDS-P-littoralis_Contig1423:4451..4622Pylaiella littoralis U1_48CDSP-littoralis_Contig1423 4452..4622 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1423.2.1prot_P-littoralis_Contig1423.2.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1423 4452..4622 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1423.2.1

>prot_P-littoralis_Contig1423.2.1 ID=prot_P-littoralis_Contig1423.2.1|Name=mRNA_P-littoralis_Contig1423.2.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=57bp
ALIGRYYAAGLESVCEVLGADDKHMFAAKNYRRSHHFLLVMYEGLWSGVV
DRYLEER
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mRNA from alignment at P-littoralis_Contig1423:4450..4622-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1423.2.1 ID=mRNA_P-littoralis_Contig1423.2.1|Name=mRNA_P-littoralis_Contig1423.2.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=173bp|location=Sequence derived from alignment at P-littoralis_Contig1423:4450..4622- (Pylaiella littoralis U1_48)
GCTCTCATAGGACGATACTACGCCGCCGGGTTGGAGAGTGTATGCGAAGT
TCTGGGCGCTGATGACAAGCACATGTTCGCCGCCAAGAACTATCGACGTA
GCCACCACTTTCTGCTTGTCATGTACGAGGGACTTTGGTCGGGCGTGGTA
GACCGCTATCTCGAGGAACGCGG
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Coding sequence (CDS) from alignment at P-littoralis_Contig1423:4450..4622-

>mRNA_P-littoralis_Contig1423.2.1 ID=mRNA_P-littoralis_Contig1423.2.1|Name=mRNA_P-littoralis_Contig1423.2.1|organism=Pylaiella littoralis U1_48|type=CDS|length=171bp|location=Sequence derived from alignment at P-littoralis_Contig1423:4450..4622- (Pylaiella littoralis U1_48)
GCTCTCATAGGACGATACTACGCCGCCGGGTTGGAGAGTGTATGCGAAGT
TCTGGGCGCTGATGACAAGCACATGTTCGCCGCCAAGAACTATCGACGTA
GCCACCACTTTCTGCTTGTCATGTACGAGGGACTTTGGTCGGGCGTGGTA
GACCGCTATCTCGAGGAACGC
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