mRNA_P-littoralis_Contig1422.2.1 (mRNA) Pylaiella littoralis U1_48
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Overview
Homology
BLAST of mRNA_P-littoralis_Contig1422.2.1 vs. uniprot
Match: A0A554VRL6_9FLAO (RusA family crossover junction endodeoxyribonuclease n=1 Tax=Aquimarina algiphila TaxID=2047982 RepID=A0A554VRL6_9FLAO) HSP 1 Score: 146 bits (369), Expect = 1.990e-42 Identity = 74/116 (63.79%), Postives = 83/116 (71.55%), Query Frame = 3
Query: 75 KAICTVLPKKSVKDNERNIAFDVKSQLPTGFVPIDGPIEVEVLFVFPPLKSWRKAIRENFERGCLIHKTTKPDLTDNLMKGLFDAMNGIVFIDDSRICKVKSEKIYGQVPRTNVLI 422
K+ + KK V NERNIA+DVKSQLP +P D I V+V FVFPPLKSW K + G +I+K TKPDLTDNLMKGLFDAM GIVF DD+RICKV S KIYG VPRT V I
Sbjct: 29 KSFVSSYQKKEVVQNERNIAYDVKSQLPLNHIPYDNAIGVKVTFVFPPLKSWTKKKLAFLKEGGIIYKITKPDLTDNLMKGLFDAMGGIVFTDDARICKVSSTKIYGLVPRTEVTI 144
BLAST of mRNA_P-littoralis_Contig1422.2.1 vs. uniprot
Match: UPI000986CACC (RusA family crossover junction endodeoxyribonuclease n=1 Tax=Chryseobacterium sp. JV274 TaxID=1932669 RepID=UPI000986CACC) HSP 1 Score: 144 bits (363), Expect = 1.520e-41 Identity = 71/121 (58.68%), Postives = 84/121 (69.42%), Query Frame = 3
Query: 69 GQKAICTVLPKKSVKDNERNIAFDVKSQLPTGFVPIDGPIEVEVLFVFPPLKSWRKAIRENFERGCLIHKTTKPDLTDNLMKGLFDAMNGIVFIDDSRICKVKSEKIYGQVPRTNVLIREI 431
G K V NERNIAFDVKSQLP GF+P I+ +V FVFPPLKSW K I+E FE G I+KT++PDLTDNLMKG DAM GIV+ DD+ I KV+SEKIYG+VPR + E+
Sbjct: 25 GSKQFAKAYQPAKVIQNERNIAFDVKSQLPKGFIPFTTAIKAKVTFVFPPLKSWNKKIQEQFETGEKIYKTSRPDLTDNLMKGTMDAMTGIVYTDDAVIVKVESEKIYGKVPRIEIEFEEL 145
BLAST of mRNA_P-littoralis_Contig1422.2.1 vs. uniprot
Match: A0A511YFX4_9FLAO (Uncharacterized protein n=1 Tax=Chryseobacterium lathyri TaxID=395933 RepID=A0A511YFX4_9FLAO) HSP 1 Score: 137 bits (346), Expect = 5.780e-39 Identity = 66/106 (62.26%), Postives = 76/106 (71.70%), Query Frame = 3
Query: 99 KKSVKDNERNIAFDVKSQLPTGFVPIDGPIEVEVLFVFPPLKSWRKAIRENFERGCLIHKTTKPDLTDNLMKGLFDAMNGIVFIDDSRICKVKSEKIYGQVPRTNV 416
K V NERNIAFDVKSQLP GF+P + V+V FVFPPLK W K E E G +KTTKPDLTDNLMKG DAMNGI+F DD+ I KV+SEKI+G +PR +
Sbjct: 35 KVEVIQNERNIAFDVKSQLPKGFIPFRTALRVKVTFVFPPLKGWSKKKLEQLEAGTKFYKTTKPDLTDNLMKGTMDAMNGIIFTDDAVIAKVESEKIFGSIPRIEI 140
BLAST of mRNA_P-littoralis_Contig1422.2.1 vs. uniprot
Match: UPI001BB87245 (RusA family crossover junction endodeoxyribonuclease n=1 Tax=Bacteroidetes bacterium TaxID=1898104 RepID=UPI001BB87245) HSP 1 Score: 134 bits (338), Expect = 9.450e-38 Identity = 64/110 (58.18%), Postives = 80/110 (72.73%), Query Frame = 3
Query: 102 KSVKDNERNIAFDVKSQLPTGFVPIDGPIEVEVLFVFPPLKSWRKAIRENFERGCLIHKTTKPDLTDNLMKGLFDAMNGIVFIDDSRICKVKSEKIYGQVPRTNVLIREI 431
K V +NERNIAFD+KSQLP FVP I ++ +FVFPPL SW K + +G +I K TKPDLTDNLMKGL DAM+GIVFIDD++I +VK+ KIYG +PR + E+
Sbjct: 36 KEVVENERNIAFDIKSQLPLDFVPFSKAIGMKAIFVFPPLSSWPKKKIQELSQGAIIFKDTKPDLTDNLMKGLCDAMSGIVFIDDAKIAEVKTRKIYGFIPRIEIEFYEL 145
BLAST of mRNA_P-littoralis_Contig1422.2.1 vs. uniprot
Match: UPI001F3C54DE (RusA family crossover junction endodeoxyribonuclease n=1 Tax=Chryseobacterium sp. R2A-55 TaxID=2744445 RepID=UPI001F3C54DE) HSP 1 Score: 134 bits (337), Expect = 1.380e-37 Identity = 65/111 (58.56%), Postives = 79/111 (71.17%), Query Frame = 3
Query: 99 KKSVKDNERNIAFDVKSQLPTGFVPIDGPIEVEVLFVFPPLKSWRKAIRENFERGCLIHKTTKPDLTDNLMKGLFDAMNGIVFIDDSRICKVKSEKIYGQVPRTNVLIREI 431
KK V DNERN AFD KSQLP GF P GPI+V+ LFVFPPLK + KA G +I+K TKPDL DNL KG+ D++ GIVF +DS+IC+V S KIYG VPR ++ E+
Sbjct: 36 KKEVVDNERNFAFDAKSQLPEGFKPFTGPIKVKALFVFPPLKGFTKAKLNILASGGIIYKDTKPDLQDNLFKGVADSLEGIVFNNDSQICEVASRKIYGTVPRVELIFEEL 146
BLAST of mRNA_P-littoralis_Contig1422.2.1 vs. uniprot
Match: A0A0Q5Q635_9FLAO (Uncharacterized protein n=1 Tax=Chryseobacterium sp. Leaf180 TaxID=1736289 RepID=A0A0Q5Q635_9FLAO) HSP 1 Score: 132 bits (333), Expect = 5.250e-37 Identity = 64/110 (58.18%), Postives = 77/110 (70.00%), Query Frame = 3
Query: 102 KSVKDNERNIAFDVKSQLPTGFVPIDGPIEVEVLFVFPPLKSWRKAIRENFERGCLIHKTTKPDLTDNLMKGLFDAMNGIVFIDDSRICKVKSEKIYGQVPRTNVLIREI 431
K V NERNIA+D K+QLP F+P I V+ LFVFP LK + KA GC+++KTTKPDLTDNLMKG DA+NGIVF DD+ I KV+SEKIYG VPR + E+
Sbjct: 35 KEVVQNERNIAYDAKAQLPPDFIPFSTAIRVKALFVFPTLKGFTKAKLNAISTGCIVYKTTKPDLTDNLMKGTIDALNGIVFTDDAVIAKVESEKIYGLVPRIELEFEEL 144
BLAST of mRNA_P-littoralis_Contig1422.2.1 vs. uniprot
Match: A0A448LNB3_9FLAO (Holliday junction resolvase n=1 Tax=Chryseobacterium nakagawai TaxID=1241982 RepID=A0A448LNB3_9FLAO) HSP 1 Score: 127 bits (318), Expect = 1.080e-34 Identity = 65/123 (52.85%), Postives = 82/123 (66.67%), Query Frame = 3
Query: 69 GQKAICTVLPKKSVKDNERNIAFDVKSQLPTGFVPIDGPIEVE-VLFVFPPLKSWRKAIRENFERGCLIHKTTKPDLTDNLMKGLFDAMNGIVFIDDSRICKVKS-EKIYGQVPRTNVLIREI 431
G K V NERNIAFDVKSQLP GFVP+ G I V+ +L+VFPPL S+ K + E G + +KTTKPDLTDNL K LFDA+ GIV+++DS++CK +KIYG VPR + E+
Sbjct: 25 GSKQFAKAYQPDKVVQNERNIAFDVKSQLPNGFVPMTGAIHVKRLLYVFPPLSSFSKKKLKEIEEGKIFYKTTKPDLTDNLNKPLFDALQGIVYLNDSQVCKFSEVDKIYGTVPRIEIEFEEL 147
BLAST of mRNA_P-littoralis_Contig1422.2.1 vs. uniprot
Match: UPI0019C73BBE (RusA family crossover junction endodeoxyribonuclease n=1 Tax=Flavobacterium sp. TaxID=239 RepID=UPI0019C73BBE) HSP 1 Score: 126 bits (317), Expect = 1.400e-34 Identity = 69/138 (50.00%), Postives = 85/138 (61.59%), Query Frame = 3
Query: 3 IVF*NIRNSTIKAISKI*DSRKGQKAICTVLPKKSVKDNERNIAFDVKSQLPTGFVPIDGPIEVEVLFVFPPLKSWRKAIRENFERGCLIHKTTKPDLTDNLMKGLFDAMNGIVFIDDSRICKVKSEKIYGQVPRTNV 416
I+ I + A +I S+ QK KKSV DN NI SQLP GFVP D I +V FVFPPLKSW K + FE G +I+KT+KPD+ DN +K +FD +NGIVFIDDSR+ +V SEKIYG PR +
Sbjct: 3 IIIPGIPQAKQSARFRIQKSKASQKDFVMSYQKKSVTDNASNIGKTALSQLPVGFVPYDCAIVAKVTFVFPPLKSWNKVTKLLFESGKVIYKTSKPDV-DNCLKAIFDGLNGIVFIDDSRVSRVLSEKIYGNEPRVEL 139
BLAST of mRNA_P-littoralis_Contig1422.2.1 vs. uniprot
Match: UPI00099AC1A8 (RusA family crossover junction endodeoxyribonuclease n=1 Tax=Elizabethkingia TaxID=308865 RepID=UPI00099AC1A8) HSP 1 Score: 126 bits (317), Expect = 1.530e-34 Identity = 57/109 (52.29%), Postives = 78/109 (71.56%), Query Frame = 3
Query: 108 VKDNERNIAFDVKSQLPTGFVPIDGPIEVEVLFVFPPLKSWRKAIRENFERGCLIHKTTKPDLTDNLMKGLFDAMNGIVFIDDSRICKVKSEKIYGQVPRTNVLIREIE 434
VK NE+N + D K+Q+P GF+P GP++V+ LFVFPPLK + K G I+KTTKPDLTDNLMKG DA+NG+VF DD+ I +V+S+KI+G VPR + +++
Sbjct: 39 VKKNEKNFSADAKTQIPEGFIPFSGPVKVKALFVFPPLKGFTKTKLNALASGATIYKTTKPDLTDNLMKGTMDALNGVVFTDDAIIAEVESKKIFGIVPRIELEFEKLD 147
BLAST of mRNA_P-littoralis_Contig1422.2.1 vs. uniprot
Match: A0A845PRB1_9FLAO (RusA family crossover junction endodeoxyribonuclease n=1 Tax=Elizabethkingia argenteiflava TaxID=2681556 RepID=A0A845PRB1_9FLAO) HSP 1 Score: 122 bits (305), Expect = 1.000e-32 Identity = 59/103 (57.28%), Postives = 75/103 (72.82%), Query Frame = 3
Query: 99 KKSVKDNERNIAFDVKSQLPTGFVPIDGPIEVEVLFVFPPLKSWRKAIRENFERGCLIHKTTKPDLTDNLMKGLFDAMNGIVFIDDSRICKVKSEKIYGQVPR 407
KK V +NE+ IAF K+QLP GF P ++V VLFVFPPLKS+ KA G +++KTTKPDLTDNLMK DA+NGIVF DD+ I +V+S+KI+G +PR
Sbjct: 34 KKEVVENEKKIAFTAKTQLPKGFKPFSEALKVRVLFVFPPLKSFSKAKMNALATGVVMYKTTKPDLTDNLMKSTMDALNGIVFTDDAIISEVESKKIFGLIPR 136 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1422.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig1422.2.1 >prot_P-littoralis_Contig1422.2.1 ID=prot_P-littoralis_Contig1422.2.1|Name=mRNA_P-littoralis_Contig1422.2.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=45bp MKGLFDAMNGIVFIDDSRICKVKSEKIYGQVPRTNVLIREIENV*back to top mRNA from alignment at P-littoralis_Contig1422:2152..2594- Legend: UTRCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig1422.2.1 ID=mRNA_P-littoralis_Contig1422.2.1|Name=mRNA_P-littoralis_Contig1422.2.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=443bp|location=Sequence derived from alignment at P-littoralis_Contig1422:2152..2594- (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig1422:2152..2594- >mRNA_P-littoralis_Contig1422.2.1 ID=mRNA_P-littoralis_Contig1422.2.1|Name=mRNA_P-littoralis_Contig1422.2.1|organism=Pylaiella littoralis U1_48|type=CDS|length=135bp|location=Sequence derived from alignment at P-littoralis_Contig1422:2152..2594- (Pylaiella littoralis U1_48)back to top |