mRNA_P-littoralis_Contig1422.2.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1422.2.1
Unique NamemRNA_P-littoralis_Contig1422.2.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig1422.2.1 vs. uniprot
Match: A0A554VRL6_9FLAO (RusA family crossover junction endodeoxyribonuclease n=1 Tax=Aquimarina algiphila TaxID=2047982 RepID=A0A554VRL6_9FLAO)

HSP 1 Score: 146 bits (369), Expect = 1.990e-42
Identity = 74/116 (63.79%), Postives = 83/116 (71.55%), Query Frame = 3
Query:   75 KAICTVLPKKSVKDNERNIAFDVKSQLPTGFVPIDGPIEVEVLFVFPPLKSWRKAIRENFERGCLIHKTTKPDLTDNLMKGLFDAMNGIVFIDDSRICKVKSEKIYGQVPRTNVLI 422
            K+  +   KK V  NERNIA+DVKSQLP   +P D  I V+V FVFPPLKSW K      + G +I+K TKPDLTDNLMKGLFDAM GIVF DD+RICKV S KIYG VPRT V I
Sbjct:   29 KSFVSSYQKKEVVQNERNIAYDVKSQLPLNHIPYDNAIGVKVTFVFPPLKSWTKKKLAFLKEGGIIYKITKPDLTDNLMKGLFDAMGGIVFTDDARICKVSSTKIYGLVPRTEVTI 144          
BLAST of mRNA_P-littoralis_Contig1422.2.1 vs. uniprot
Match: UPI000986CACC (RusA family crossover junction endodeoxyribonuclease n=1 Tax=Chryseobacterium sp. JV274 TaxID=1932669 RepID=UPI000986CACC)

HSP 1 Score: 144 bits (363), Expect = 1.520e-41
Identity = 71/121 (58.68%), Postives = 84/121 (69.42%), Query Frame = 3
Query:   69 GQKAICTVLPKKSVKDNERNIAFDVKSQLPTGFVPIDGPIEVEVLFVFPPLKSWRKAIRENFERGCLIHKTTKPDLTDNLMKGLFDAMNGIVFIDDSRICKVKSEKIYGQVPRTNVLIREI 431
            G K          V  NERNIAFDVKSQLP GF+P    I+ +V FVFPPLKSW K I+E FE G  I+KT++PDLTDNLMKG  DAM GIV+ DD+ I KV+SEKIYG+VPR  +   E+
Sbjct:   25 GSKQFAKAYQPAKVIQNERNIAFDVKSQLPKGFIPFTTAIKAKVTFVFPPLKSWNKKIQEQFETGEKIYKTSRPDLTDNLMKGTMDAMTGIVYTDDAVIVKVESEKIYGKVPRIEIEFEEL 145          
BLAST of mRNA_P-littoralis_Contig1422.2.1 vs. uniprot
Match: A0A511YFX4_9FLAO (Uncharacterized protein n=1 Tax=Chryseobacterium lathyri TaxID=395933 RepID=A0A511YFX4_9FLAO)

HSP 1 Score: 137 bits (346), Expect = 5.780e-39
Identity = 66/106 (62.26%), Postives = 76/106 (71.70%), Query Frame = 3
Query:   99 KKSVKDNERNIAFDVKSQLPTGFVPIDGPIEVEVLFVFPPLKSWRKAIRENFERGCLIHKTTKPDLTDNLMKGLFDAMNGIVFIDDSRICKVKSEKIYGQVPRTNV 416
            K  V  NERNIAFDVKSQLP GF+P    + V+V FVFPPLK W K   E  E G   +KTTKPDLTDNLMKG  DAMNGI+F DD+ I KV+SEKI+G +PR  +
Sbjct:   35 KVEVIQNERNIAFDVKSQLPKGFIPFRTALRVKVTFVFPPLKGWSKKKLEQLEAGTKFYKTTKPDLTDNLMKGTMDAMNGIIFTDDAVIAKVESEKIFGSIPRIEI 140          
BLAST of mRNA_P-littoralis_Contig1422.2.1 vs. uniprot
Match: UPI001BB87245 (RusA family crossover junction endodeoxyribonuclease n=1 Tax=Bacteroidetes bacterium TaxID=1898104 RepID=UPI001BB87245)

HSP 1 Score: 134 bits (338), Expect = 9.450e-38
Identity = 64/110 (58.18%), Postives = 80/110 (72.73%), Query Frame = 3
Query:  102 KSVKDNERNIAFDVKSQLPTGFVPIDGPIEVEVLFVFPPLKSWRKAIRENFERGCLIHKTTKPDLTDNLMKGLFDAMNGIVFIDDSRICKVKSEKIYGQVPRTNVLIREI 431
            K V +NERNIAFD+KSQLP  FVP    I ++ +FVFPPL SW K   +   +G +I K TKPDLTDNLMKGL DAM+GIVFIDD++I +VK+ KIYG +PR  +   E+
Sbjct:   36 KEVVENERNIAFDIKSQLPLDFVPFSKAIGMKAIFVFPPLSSWPKKKIQELSQGAIIFKDTKPDLTDNLMKGLCDAMSGIVFIDDAKIAEVKTRKIYGFIPRIEIEFYEL 145          
BLAST of mRNA_P-littoralis_Contig1422.2.1 vs. uniprot
Match: UPI001F3C54DE (RusA family crossover junction endodeoxyribonuclease n=1 Tax=Chryseobacterium sp. R2A-55 TaxID=2744445 RepID=UPI001F3C54DE)

HSP 1 Score: 134 bits (337), Expect = 1.380e-37
Identity = 65/111 (58.56%), Postives = 79/111 (71.17%), Query Frame = 3
Query:   99 KKSVKDNERNIAFDVKSQLPTGFVPIDGPIEVEVLFVFPPLKSWRKAIRENFERGCLIHKTTKPDLTDNLMKGLFDAMNGIVFIDDSRICKVKSEKIYGQVPRTNVLIREI 431
            KK V DNERN AFD KSQLP GF P  GPI+V+ LFVFPPLK + KA       G +I+K TKPDL DNL KG+ D++ GIVF +DS+IC+V S KIYG VPR  ++  E+
Sbjct:   36 KKEVVDNERNFAFDAKSQLPEGFKPFTGPIKVKALFVFPPLKGFTKAKLNILASGGIIYKDTKPDLQDNLFKGVADSLEGIVFNNDSQICEVASRKIYGTVPRVELIFEEL 146          
BLAST of mRNA_P-littoralis_Contig1422.2.1 vs. uniprot
Match: A0A0Q5Q635_9FLAO (Uncharacterized protein n=1 Tax=Chryseobacterium sp. Leaf180 TaxID=1736289 RepID=A0A0Q5Q635_9FLAO)

HSP 1 Score: 132 bits (333), Expect = 5.250e-37
Identity = 64/110 (58.18%), Postives = 77/110 (70.00%), Query Frame = 3
Query:  102 KSVKDNERNIAFDVKSQLPTGFVPIDGPIEVEVLFVFPPLKSWRKAIRENFERGCLIHKTTKPDLTDNLMKGLFDAMNGIVFIDDSRICKVKSEKIYGQVPRTNVLIREI 431
            K V  NERNIA+D K+QLP  F+P    I V+ LFVFP LK + KA       GC+++KTTKPDLTDNLMKG  DA+NGIVF DD+ I KV+SEKIYG VPR  +   E+
Sbjct:   35 KEVVQNERNIAYDAKAQLPPDFIPFSTAIRVKALFVFPTLKGFTKAKLNAISTGCIVYKTTKPDLTDNLMKGTIDALNGIVFTDDAVIAKVESEKIYGLVPRIELEFEEL 144          
BLAST of mRNA_P-littoralis_Contig1422.2.1 vs. uniprot
Match: A0A448LNB3_9FLAO (Holliday junction resolvase n=1 Tax=Chryseobacterium nakagawai TaxID=1241982 RepID=A0A448LNB3_9FLAO)

HSP 1 Score: 127 bits (318), Expect = 1.080e-34
Identity = 65/123 (52.85%), Postives = 82/123 (66.67%), Query Frame = 3
Query:   69 GQKAICTVLPKKSVKDNERNIAFDVKSQLPTGFVPIDGPIEVE-VLFVFPPLKSWRKAIRENFERGCLIHKTTKPDLTDNLMKGLFDAMNGIVFIDDSRICKVKS-EKIYGQVPRTNVLIREI 431
            G K          V  NERNIAFDVKSQLP GFVP+ G I V+ +L+VFPPL S+ K   +  E G + +KTTKPDLTDNL K LFDA+ GIV+++DS++CK    +KIYG VPR  +   E+
Sbjct:   25 GSKQFAKAYQPDKVVQNERNIAFDVKSQLPNGFVPMTGAIHVKRLLYVFPPLSSFSKKKLKEIEEGKIFYKTTKPDLTDNLNKPLFDALQGIVYLNDSQVCKFSEVDKIYGTVPRIEIEFEEL 147          
BLAST of mRNA_P-littoralis_Contig1422.2.1 vs. uniprot
Match: UPI0019C73BBE (RusA family crossover junction endodeoxyribonuclease n=1 Tax=Flavobacterium sp. TaxID=239 RepID=UPI0019C73BBE)

HSP 1 Score: 126 bits (317), Expect = 1.400e-34
Identity = 69/138 (50.00%), Postives = 85/138 (61.59%), Query Frame = 3
Query:    3 IVF*NIRNSTIKAISKI*DSRKGQKAICTVLPKKSVKDNERNIAFDVKSQLPTGFVPIDGPIEVEVLFVFPPLKSWRKAIRENFERGCLIHKTTKPDLTDNLMKGLFDAMNGIVFIDDSRICKVKSEKIYGQVPRTNV 416
            I+   I  +   A  +I  S+  QK       KKSV DN  NI     SQLP GFVP D  I  +V FVFPPLKSW K  +  FE G +I+KT+KPD+ DN +K +FD +NGIVFIDDSR+ +V SEKIYG  PR  +
Sbjct:    3 IIIPGIPQAKQSARFRIQKSKASQKDFVMSYQKKSVTDNASNIGKTALSQLPVGFVPYDCAIVAKVTFVFPPLKSWNKVTKLLFESGKVIYKTSKPDV-DNCLKAIFDGLNGIVFIDDSRVSRVLSEKIYGNEPRVEL 139          
BLAST of mRNA_P-littoralis_Contig1422.2.1 vs. uniprot
Match: UPI00099AC1A8 (RusA family crossover junction endodeoxyribonuclease n=1 Tax=Elizabethkingia TaxID=308865 RepID=UPI00099AC1A8)

HSP 1 Score: 126 bits (317), Expect = 1.530e-34
Identity = 57/109 (52.29%), Postives = 78/109 (71.56%), Query Frame = 3
Query:  108 VKDNERNIAFDVKSQLPTGFVPIDGPIEVEVLFVFPPLKSWRKAIRENFERGCLIHKTTKPDLTDNLMKGLFDAMNGIVFIDDSRICKVKSEKIYGQVPRTNVLIREIE 434
            VK NE+N + D K+Q+P GF+P  GP++V+ LFVFPPLK + K        G  I+KTTKPDLTDNLMKG  DA+NG+VF DD+ I +V+S+KI+G VPR  +   +++
Sbjct:   39 VKKNEKNFSADAKTQIPEGFIPFSGPVKVKALFVFPPLKGFTKTKLNALASGATIYKTTKPDLTDNLMKGTMDALNGVVFTDDAIIAEVESKKIFGIVPRIELEFEKLD 147          
BLAST of mRNA_P-littoralis_Contig1422.2.1 vs. uniprot
Match: A0A845PRB1_9FLAO (RusA family crossover junction endodeoxyribonuclease n=1 Tax=Elizabethkingia argenteiflava TaxID=2681556 RepID=A0A845PRB1_9FLAO)

HSP 1 Score: 122 bits (305), Expect = 1.000e-32
Identity = 59/103 (57.28%), Postives = 75/103 (72.82%), Query Frame = 3
Query:   99 KKSVKDNERNIAFDVKSQLPTGFVPIDGPIEVEVLFVFPPLKSWRKAIRENFERGCLIHKTTKPDLTDNLMKGLFDAMNGIVFIDDSRICKVKSEKIYGQVPR 407
            KK V +NE+ IAF  K+QLP GF P    ++V VLFVFPPLKS+ KA       G +++KTTKPDLTDNLMK   DA+NGIVF DD+ I +V+S+KI+G +PR
Sbjct:   34 KKEVVENEKKIAFTAKTQLPKGFKPFSEALKVRVLFVFPPLKSFSKAKMNALATGVVMYKTTKPDLTDNLMKSTMDALNGIVFTDDAIISEVESKKIFGLIPR 136          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1422.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A554VRL6_9FLAO1.990e-4263.79RusA family crossover junction endodeoxyribonuclea... [more]
UPI000986CACC1.520e-4158.68RusA family crossover junction endodeoxyribonuclea... [more]
A0A511YFX4_9FLAO5.780e-3962.26Uncharacterized protein n=1 Tax=Chryseobacterium l... [more]
UPI001BB872459.450e-3858.18RusA family crossover junction endodeoxyribonuclea... [more]
UPI001F3C54DE1.380e-3758.56RusA family crossover junction endodeoxyribonuclea... [more]
A0A0Q5Q635_9FLAO5.250e-3758.18Uncharacterized protein n=1 Tax=Chryseobacterium s... [more]
A0A448LNB3_9FLAO1.080e-3452.85Holliday junction resolvase n=1 Tax=Chryseobacteri... [more]
UPI0019C73BBE1.400e-3450.00RusA family crossover junction endodeoxyribonuclea... [more]
UPI00099AC1A81.530e-3452.29RusA family crossover junction endodeoxyribonuclea... [more]
A0A845PRB1_9FLAO1.000e-3257.28RusA family crossover junction endodeoxyribonuclea... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1422contigP-littoralis_Contig1422:2152..2594 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog1327983.S0A1C6_9CAUD
Model size443
Max annot lvl10744|Podoviridae
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Evalue3.12e-07
EggNOG OGs4QB0C@10239|Viruses,4QW7S@35237|dsDNA viruses no RNA stage,4QPK3@28883|Caudovirales,4QNHV@10744|Podoviridae
DescriptionEndodeoxyribonuclease RusA
Cds size135
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789669.6759355-CDS-P-littoralis_Contig1422:2151..22861680789669.6759355-CDS-P-littoralis_Contig1422:2151..2286Pylaiella littoralis U1_48CDSP-littoralis_Contig1422 2152..2286 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789669.6869159-UTR-P-littoralis_Contig1422:2286..25941680789669.6869159-UTR-P-littoralis_Contig1422:2286..2594Pylaiella littoralis U1_48UTRP-littoralis_Contig1422 2287..2594 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1422.2.1prot_P-littoralis_Contig1422.2.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1422 2152..2286 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1422.2.1

>prot_P-littoralis_Contig1422.2.1 ID=prot_P-littoralis_Contig1422.2.1|Name=mRNA_P-littoralis_Contig1422.2.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=45bp
MKGLFDAMNGIVFIDDSRICKVKSEKIYGQVPRTNVLIREIENV*
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mRNA from alignment at P-littoralis_Contig1422:2152..2594-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1422.2.1 ID=mRNA_P-littoralis_Contig1422.2.1|Name=mRNA_P-littoralis_Contig1422.2.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=443bp|location=Sequence derived from alignment at P-littoralis_Contig1422:2152..2594- (Pylaiella littoralis U1_48)
GAATTGTCTTTTGAAATATTAGGAATTCCACAATCAAAGCAATCAGCAAG ATTTAGGATAGCAGGAAAGGGCAAAAAGCAATTTGTACAGTCTTACCAAA AAAATCAGTGAAGGACAATGAGCGAAATATTGCTTTCGATGTTAAATCAC AATTACCAACAGGTTTTGTTCCTATAGACGGCCCCATTGAAGTTGAAGTT TTATTTGTATTCCCTCCTTTAAAAAGTTGGAGAAAAGCTATTCGGGAAAA CTTTGAAAGGGGTTGCTTGATACACAAGACGACAAAACCTGATTTAACAG ATAATCTTATGAAAGGACTGTTTGATGCCATGAACGGCATAGTCTTTATA GATGATTCTAGAATATGCAAGGTAAAGAGTGAAAAGATATATGGGCAAGT TCCAAGGACTAATGTTCTTATTAGAGAAATAGAGAATGTATAA
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Coding sequence (CDS) from alignment at P-littoralis_Contig1422:2152..2594-

>mRNA_P-littoralis_Contig1422.2.1 ID=mRNA_P-littoralis_Contig1422.2.1|Name=mRNA_P-littoralis_Contig1422.2.1|organism=Pylaiella littoralis U1_48|type=CDS|length=135bp|location=Sequence derived from alignment at P-littoralis_Contig1422:2152..2594- (Pylaiella littoralis U1_48)
ATGAAAGGACTGTTTGATGCCATGAACGGCATAGTCTTTATAGATGATTC
TAGAATATGCAAGGTAAAGAGTGAAAAGATATATGGGCAAGTTCCAAGGA
CTAATGTTCTTATTAGAGAAATAGAGAATGTATAA
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