mRNA_P-littoralis_Contig1420.1.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1420.1.1
Unique NamemRNA_P-littoralis_Contig1420.1.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1420.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1420contigP-littoralis_Contig1420:6597..6826 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size220
Hectar predicted targeting categoryother localisation
Exons2
Cds size189
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789669.4544244-CDS-P-littoralis_Contig1420:6596..67271680789669.4544244-CDS-P-littoralis_Contig1420:6596..6727Pylaiella littoralis U1_48CDSP-littoralis_Contig1420 6597..6727 -
1680789669.4684079-CDS-P-littoralis_Contig1420:6737..67951680789669.4684079-CDS-P-littoralis_Contig1420:6737..6795Pylaiella littoralis U1_48CDSP-littoralis_Contig1420 6738..6795 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789669.481094-UTR-P-littoralis_Contig1420:6795..68261680789669.481094-UTR-P-littoralis_Contig1420:6795..6826Pylaiella littoralis U1_48UTRP-littoralis_Contig1420 6796..6826 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1420.1.1prot_P-littoralis_Contig1420.1.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1420 6597..6795 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1420.1.1

>prot_P-littoralis_Contig1420.1.1 ID=prot_P-littoralis_Contig1420.1.1|Name=mRNA_P-littoralis_Contig1420.1.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=63bp
MYADYPEGYDGSVYSDQSYQAVTCAERLVICKPLVRRVSSPEETRLPDPP
PQPLRPRTHRPTW
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mRNA from alignment at P-littoralis_Contig1420:6597..6826-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1420.1.1 ID=mRNA_P-littoralis_Contig1420.1.1|Name=mRNA_P-littoralis_Contig1420.1.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=230bp|location=Sequence derived from alignment at P-littoralis_Contig1420:6597..6826- (Pylaiella littoralis U1_48)
TTATGGTCCTCCACCTGGACGTGCACCACCCATGTATGCAGACTATCCTG
AAGGCTATGATGGAAGCGTGTACTCCGACCAGTCATACCGCTCACGTAGA
AGCTGTCACTTGTGCGGAGAGATTGGTCATCTGCAAGCCACTTGTAAGAC
GCGTTTCATCGCCGGAAGAGACCCGGCTCCCGGATCCTCCTCCGCAGCCC
CTCAGGCCTCGTACGCACAGGCCAACATGG
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Coding sequence (CDS) from alignment at P-littoralis_Contig1420:6597..6826-

>mRNA_P-littoralis_Contig1420.1.1 ID=mRNA_P-littoralis_Contig1420.1.1|Name=mRNA_P-littoralis_Contig1420.1.1|organism=Pylaiella littoralis U1_48|type=CDS|length=189bp|location=Sequence derived from alignment at P-littoralis_Contig1420:6597..6826- (Pylaiella littoralis U1_48)
ATGTATGCAGACTATCCTGAAGGCTATGATGGAAGCGTGTACTCCGACCA
GTCATACCAAGCTGTCACTTGTGCGGAGAGATTGGTCATCTGCAAGCCAC
TTGTAAGACGCGTTTCATCGCCGGAAGAGACCCGGCTCCCGGATCCTCCT
CCGCAGCCCCTCAGGCCTCGTACGCACAGGCCAACATGG
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