mRNA_P-littoralis_Contig142.90.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig142.90.1
Unique NamemRNA_P-littoralis_Contig142.90.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig142.90.1 vs. uniprot
Match: A0A6H5K7F2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7F2_9PHAE)

HSP 1 Score: 214 bits (544), Expect = 1.470e-61
Identity = 112/145 (77.24%), Postives = 122/145 (84.14%), Query Frame = 3 
Query:  183 QVRENATCGDRLTEGVASKLHFFTSKQYSALFSDLREAATAYEVAKDQDGAKVVRLVTAALKAVLSAEQRWLQATSALRERKYLSVLQLLKGTKRFISDATKSLPCVSLSLARAGKVLSPPGGLGPLDIVAELAALDGLKDHAKS 617
            Q+RENATCGDRLTE VASKL F T K YS LFS L +AA AYEVAKDQDG KVVR+V AAL+ VLSAEQRW+QAT AL+ R+Y S  QL+K TKRFISDATK LP VS SLARAGKVLSPPGGL P+DIVAELAALDGLKDH +S
Sbjct:  166 QMRENATCGDRLTESVASKLQFLTPKDYSGLFSQLSQAAMAYEVAKDQDGIKVVRIVRAALELVLSAEQRWMQATDALKLRQYASASQLMKETKRFISDATKGLPFVSPSLARAGKVLSPPGGLSPVDIVAELAALDGLKDHTRS 310
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BLAST of mRNA_P-littoralis_Contig142.90.1 vs. uniprot
Match: D8LTX0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTX0_ECTSI)

HSP 1 Score: 212 bits (539), Expect = 7.670e-60
Identity = 111/145 (76.55%), Postives = 122/145 (84.14%), Query Frame = 3 
Query:  183 QVRENATCGDRLTEGVASKLHFFTSKQYSALFSDLREAATAYEVAKDQDGAKVVRLVTAALKAVLSAEQRWLQATSALRERKYLSVLQLLKGTKRFISDATKSLPCVSLSLARAGKVLSPPGGLGPLDIVAELAALDGLKDHAKS 617
            ++RENATCGDRLTE VASKL F T K YS LFS+L +AATAYEVAKDQDG KVV +V AAL+ VLSAEQRW+QAT AL++R Y S  QL+K TKRFISDATK LP VS SLARAGKVLSPPGGL P+DIVAELAALDGLK H KS
Sbjct:  164 EMRENATCGDRLTESVASKLQFLTPKDYSGLFSELSQAATAYEVAKDQDGKKVVCIVRAALELVLSAEQRWMQATDALKQRNYASASQLMKETKRFISDATKGLPFVSPSLARAGKVLSPPGGLDPVDIVAELAALDGLKAHTKS 308
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig142.90.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5K7F2_9PHAE1.470e-6177.24Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LTX0_ECTSI7.670e-6076.55Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig142contigP-littoralis_Contig142:244020..245072 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size619
Hectar predicted targeting categoryother localisation
Exons3
Cds size534
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789666.9614155-UTR-P-littoralis_Contig142:244019..2441021680789666.9614155-UTR-P-littoralis_Contig142:244019..244102Pylaiella littoralis U1_48UTRP-littoralis_Contig142 244020..244102 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789666.9734428-CDS-P-littoralis_Contig142:244102..2443571680789666.9734428-CDS-P-littoralis_Contig142:244102..244357Pylaiella littoralis U1_48CDSP-littoralis_Contig142 244103..244357 +
1680789666.9817915-CDS-P-littoralis_Contig142:244609..2447611680789666.9817915-CDS-P-littoralis_Contig142:244609..244761Pylaiella littoralis U1_48CDSP-littoralis_Contig142 244610..244761 +
1680789666.9934137-CDS-P-littoralis_Contig142:244945..2450721680789666.9934137-CDS-P-littoralis_Contig142:244945..245072Pylaiella littoralis U1_48CDSP-littoralis_Contig142 244946..245072 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig142.90.1prot_P-littoralis_Contig142.90.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig142 244103..245072 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig142.90.1

>prot_P-littoralis_Contig142.90.1 ID=prot_P-littoralis_Contig142.90.1|Name=mRNA_P-littoralis_Contig142.90.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=178bp
MHQGGVCRLLKGTVVLSPSFVMCTTWCRPFNPDQVRENATCGDRLTEGVA
SKLHFFTSKQYSALFSDLREAATAYEVAKDQDGAKVVRLVTAALKAVLSA
EQRWLQATSALRERKYLSVLQLLKGTKRFISDATKSLPCVSLSLARAGKV
LSPPGGLGPLDIVAELAALDGLKDHAKS
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mRNA from alignment at P-littoralis_Contig142:244020..245072+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig142.90.1 ID=mRNA_P-littoralis_Contig142.90.1|Name=mRNA_P-littoralis_Contig142.90.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1053bp|location=Sequence derived from alignment at P-littoralis_Contig142:244020..245072+ (Pylaiella littoralis U1_48)
GTGGGATTTTCCGCGGCCCTATGTACAAATCCCCATCATAATCTTTCTTA
ACTCGTGCATGCGCCTGCTGCTGCTGCTGCGTAATGCATCAAGGCGGAGT
CTGTCGTCTTCTGAAGGGGACCGTTGTTTTATCGCCGTCGTTTGTGATGT
GCACTACTTGGTGTCGCCCATTCAATCCTGATCAGGTGAGGGAGAATGCC
ACCTGCGGGGATCGTCTGACGGAGGGTGTTGCGAGCAAGCTGCACTTTTT
TACGTCGAAGCAATACTCCGCGCTTTTCTCGGACCTTCGGGAGGCGGCAA
CAGCATACGAGGTCGCCAAAGATCAAGACGGGGCTAAGGTAACACCAGAG
CGGCCTAATGCCCGGTGGTAGATCAACATCACGTCTGACTGGAAAAAAAA
ACGTTTTCTTCGCAGTGTGCAAATCCTGAGTTGTCGCCATTTCCACCACT
TCCCCTCCATCCAATCCACACAGCTTTCAGAAAATAAATATTTCATCAAT
GCGTCATACACGTCGTACTCATGTATCCACCTTGTTGTGCTGTTATTCTA
TTGCGATGGCCCGCTCCTGCCCACGCGTATGCAAAAAAAGGTGGTGCGCC
TAGTGACAGCCGCACTGAAAGCAGTGTTGTCGGCCGAGCAGAGGTGGCTG
CAAGCGACCAGCGCTCTCAGGGAGCGGAAATACCTATCCGTTTTGCAGCT
CTTGAAGGGAACCAAGCGCTTCATTTCCGACGCGACAAAGAGGTTAGCTG
AGTGTCGTTGAGTTGGGTGTAGTTGGGTGTACGGGGCGCCAGGTCATGTA
AGGCACTGCTCATGTTGGTGGAGACAGCCCCGGCGCTAGACCACTTACCT
TTCATGGCCCTGTCTTATTTGGGGTGGGTCTGCCTTGCTTCTCTCCTACC
TGTCACGCCTTCTTTCCTCTTGTTAGCCTTCCCTGCGTGAGCCTGTCGCT
GGCGCGCGCGGGGAAGGTCCTGTCTCCTCCCGGTGGTCTGGGCCCGCTCG
ACATCGTCGCGGAATTGGCGGCCCTCGACGGCCTGAAGGATCACGCTAAG
TCC
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Coding sequence (CDS) from alignment at P-littoralis_Contig142:244020..245072+

>mRNA_P-littoralis_Contig142.90.1 ID=mRNA_P-littoralis_Contig142.90.1|Name=mRNA_P-littoralis_Contig142.90.1|organism=Pylaiella littoralis U1_48|type=CDS|length=534bp|location=Sequence derived from alignment at P-littoralis_Contig142:244020..245072+ (Pylaiella littoralis U1_48)
ATGCATCAAGGCGGAGTCTGTCGTCTTCTGAAGGGGACCGTTGTTTTATC
GCCGTCGTTTGTGATGTGCACTACTTGGTGTCGCCCATTCAATCCTGATC
AGGTGAGGGAGAATGCCACCTGCGGGGATCGTCTGACGGAGGGTGTTGCG
AGCAAGCTGCACTTTTTTACGTCGAAGCAATACTCCGCGCTTTTCTCGGA
CCTTCGGGAGGCGGCAACAGCATACGAGGTCGCCAAAGATCAAGACGGGG
CTAAGGTGGTGCGCCTAGTGACAGCCGCACTGAAAGCAGTGTTGTCGGCC
GAGCAGAGGTGGCTGCAAGCGACCAGCGCTCTCAGGGAGCGGAAATACCT
ATCCGTTTTGCAGCTCTTGAAGGGAACCAAGCGCTTCATTTCCGACGCGA
CAAAGAGCCTTCCCTGCGTGAGCCTGTCGCTGGCGCGCGCGGGGAAGGTC
CTGTCTCCTCCCGGTGGTCTGGGCCCGCTCGACATCGTCGCGGAATTGGC
GGCCCTCGACGGCCTGAAGGATCACGCTAAGTCC
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