mRNA_P-littoralis_Contig142.84.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig142.84.1
Unique NamemRNA_P-littoralis_Contig142.84.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
[Close]
BLAST of mRNA_P-littoralis_Contig142.84.1 vs. uniprot
Match: A0A6H5KJB0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJB0_9PHAE)

HSP 1 Score: 440 bits (1131), Expect = 3.750e-143
Identity = 298/447 (66.67%), Postives = 315/447 (70.47%), Query Frame = 3 
Query:  384 VLPVLATRDQWSHYWGGSDVQRVGKLFEVTAVAFLGLWACYFASFFLGVATMTVIGTSFLFYWLLAPNVTSFRRNRALRGSIAPFPGAKGNSIAIFRARVASAKEEYHPVTGQPVFLRMVIEDEEGRALKFRTRTRPEYARIRQGMVAEAILVSPDERFDEILGVSDTFIPAANVWVGEYPYLDKVVMRRLLASRDLKRXXXXXXXXXXXXXXXXXXXXXXXXXTDE----------------ELDPITYRDSWTQTRLQKEEEEPAQRGAG----VPPARAGGDRDVF--GSAANSMSDVGAYYREDEGEEPYFEGVGSSGFSAGVREEEFDGGGGXXXXXXXXXXXXGRSGQRQQWERVSGRPRPRRRPPASA---SRSFEAEVEGGGDFYELGGGGGGRVGGETNIGSVRKGVSGG--SGMPRRYGAGEVRDASSITEGRKKGR 1643
            VLPVLATRDQWSHYWGGSDVQRVGKLFEV AVAFLGLWACYFASFFLGVATMTVIGTSFLFYWLLAPNVTSFRRNRALRGSIAPFPGA+GNS+AIF ARV SA EEYHPVTGQPVFLRMVIEDE+GRALKFRTRTR EYAR+R GM AEA+LVSPDERF+EILGVSDTFIPAANVWVGEYPYLDKVVMRRLLASRDLKRXXXXXXXXXXXXXXXXXXXXXXXXX                   ELDPI YRDSWTQTR   ++     RG G     PPA AG        G       D GAY+ E E EEPY+EGVGSSGFS G         G        XXXXX         ERVSG+PRPRRRPP +A   SR F  +  GGG + E GG            G  +   SGG   G   RYG  E  D S +  GRK+ R
Sbjct:    2 VLPVLATRDQWSHYWGGSDVQRVGKLFEVAAVAFLGLWACYFASFFLGVATMTVIGTSFLFYWLLAPNVTSFRRNRALRGSIAPFPGARGNSVAIFSARVVSAVEEYHPVTGQPVFLRMVIEDEDGRALKFRTRTRAEYARVRPGMAAEAVLVSPDERFEEILGVSDTFIPAANVWVGEYPYLDKVVMRRLLASRDLKRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXELDPIAYRDSWTQTRPLDDDLARGGRGGGGPSSAPPAHAGEGASGLPNGGTGTVPPDFGAYFGEREYEEPYYEGVGSSGFS-GAERRGMVAAGERSAAGRGXXXXXXXXXXXXXXERVSGKPRPRRRPPTAATSPSRRFGGQGRGGGGYGESGG--------RRVRGGAKDAGSGGPEGGATTRYG--ETWDDSRMAAGRKEER 437
[Close]
BLAST of mRNA_P-littoralis_Contig142.84.1 vs. uniprot
Match: D8LTW7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTW7_ECTSI)

HSP 1 Score: 387 bits (994), Expect = 4.300e-123
Identity = 223/296 (75.34%), Postives = 238/296 (80.41%), Query Frame = 3 
Query:  444 QRVGKLFEVTAVAFLGLWACYFASFFLGVATMTVIGTSFLFYWLLAPNVTSFRRNRALRGSIAPFPGAKGNSIAIFRARVASAKEEYHPVTGQPVFLRMVIEDEEGRALKFRTRTRPEYARIRQGMVAEAILVSPDERFDEILGVSDTFIPAANVWVGEYPYLDKVVMRRLLASRDLKRXXXXXXXXXXXXXXXXXXXXXXXXXTDEELDPITYRDSWTQTRLQKEEEEPA--------QRGAGVPPARAG-GDRDV-FGSAANSMSDVGAYYREDEGEEPYFEGVGSSGFSAGVR 1301
            QRVGKLFEV AVAFLGLWACYFASFFLGVATMTVIGTSFLFYWLLAPNVTSFRRNRAL+GSIAPFPGA+GNS+AIF ARVASA EEYHPVTGQPVFLRMVIEDE+GRALKFRTRTR EYAR+R GM AEAILVSPDERF+EILGVSDTFIPAANVWVGEYPYLDKVVMRRLLASRDLKRXXXXXXXX                  DEELDPITYRDSWTQTR    E++P+        + G   PPA AG G+  +  G A   + D GAY+ E E EEPY+EGVGSSGFS   R
Sbjct:   26 QRVGKLFEVAAVAFLGLWACYFASFFLGVATMTVIGTSFLFYWLLAPNVTSFRRNRALKGSIAPFPGARGNSVAIFSARVASAVEEYHPVTGQPVFLRMVIEDEDGRALKFRTRTRAEYARVRPGMAAEAILVSPDERFEEILGVSDTFIPAANVWVGEYPYLDKVVMRRLLASRDLKRXXXXXXXXDADE--------------DEELDPITYRDSWTQTRPL--EDDPSRGXXXXXXETGFSAPPAHAGEGEAGLPNGGAGTVLPDFGAYFGESEDEEPYYEGVGSSGFSGAER 305
[Close]
BLAST of mRNA_P-littoralis_Contig142.84.1 vs. uniprot
Match: A0A835YT15_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YT15_9STRA)

HSP 1 Score: 192 bits (487), Expect = 7.770e-48
Identity = 96/187 (51.34%), Postives = 129/187 (68.98%), Query Frame = 3 
Query:  414 WSHYWGGSDVQRVGKLFEVTAVAFLGLWACYFASFFLGVATMTVIGTSFLFYWLLAPNVTSFRRNRALRGSIAPFPGAKGNSIAIFRARVASAKEEYHPVTGQPVFLRMVIEDEEGRALKFRTRTRPEYARIRQGMVAEAILVS--PDERFDEILGVSDTFIPAANVWVGEYPYLDKVVMRRLLASR 968
            W++YWG   VQR GK+ E  +VAFLG+WACYF SFFLGVA  +VIG  F+FYWLL PN+ ++R+N   RG +AP P   G   A+F A +A+  EE +P+TG+   LR+ + DEEGRAL  R     E AR+  GM  E +L+S  P   F++ILGVSD +IPA ++WVG+YP+L+K+ +RRLL  R
Sbjct:    8 WNNYWG-EGVQRAGKVAESFSVAFLGVWACYFTSFFLGVAITSVIGVVFVFYWLLGPNLLNYRKNWEFRGKLAPSPKEPGTRAALFSASIANVVEEVNPITGKAANLRLEVADEEGRALMLRVPAVREAARVEAGMGIEVLLISDEPGGGFEDILGVSDAYIPAIDLWVGDYPHLNKLALRRLLNER 193
[Close]
BLAST of mRNA_P-littoralis_Contig142.84.1 vs. uniprot
Match: K8Z4E0_NANGC (Putative membrane protein n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=K8Z4E0_NANGC)

HSP 1 Score: 168 bits (426), Expect = 2.480e-42
Identity = 90/218 (41.28%), Postives = 125/218 (57.34%), Query Frame = 3 
Query:  345 CGLTRLSGDAGHRVLPVLATRDQWSHYWGGSDVQRVGKLFEVTAVAFLGLWACYFASFFLGVATMTVIGTSFLFYWLLAPNVTSFRRNRALRGS-IAPFPGAKGNSIAIFRARVASA-----KEEYHPVTGQPVFLRMVIEDEEGRALKFRTRTRPEYARIRQGMVAEAILVSPDERFDEILGVSDTFIPAANVWVGEYPYLDKVVMRRLLASRDLKR 980
            C LT L      R+LP   T DQW +YWG ++  + GK++E  +  F GLW  +F +F +G+   TV+GT FLFYW+LAP + ++RRN + RG+  A  P   G   A+F  RV          EY+    +P  L M +EDE GR L+      P Y ++R GM  E +++S    FDE++GVSD F+P    WVGEYPY+DKV  +  LASR  +R
Sbjct:   27 CSLTVLRDRTLRRLLPSQFTGDQWKYYWGITESDKFGKIYEAASATFFGLWTSWFLTFLIGLPAATVLGTVFLFYWILAPGLAAYRRNVSFRGTYFARTPRDDGVFGALFSGRVVRVGRIRQAREYN----RPEALVMSMEDESGRKLRVYAPILPSYKKVRPGMRCEGLVLSESPDFDELMGVSDVFVPDCGAWVGEYPYIDKVPFKAFLASRARRR 240
[Close]
BLAST of mRNA_P-littoralis_Contig142.84.1 vs. uniprot
Match: K8Z4B4_NANGC (Putative membrane protein n=3 Tax=Monodopsidaceae TaxID=425072 RepID=K8Z4B4_NANGC)

HSP 1 Score: 168 bits (426), Expect = 7.050e-42
Identity = 90/218 (41.28%), Postives = 125/218 (57.34%), Query Frame = 3 
Query:  345 CGLTRLSGDAGHRVLPVLATRDQWSHYWGGSDVQRVGKLFEVTAVAFLGLWACYFASFFLGVATMTVIGTSFLFYWLLAPNVTSFRRNRALRGS-IAPFPGAKGNSIAIFRARVASA-----KEEYHPVTGQPVFLRMVIEDEEGRALKFRTRTRPEYARIRQGMVAEAILVSPDERFDEILGVSDTFIPAANVWVGEYPYLDKVVMRRLLASRDLKR 980
            C LT L      R+LP   T DQW +YWG ++  + GK++E  +  F GLW  +F +F +G+   TV+GT FLFYW+LAP + ++RRN + RG+  A  P   G   A+F  RV          EY+    +P  L M +EDE GR L+      P Y ++R GM  E +++S    FDE++GVSD F+P    WVGEYPY+DKV  +  LASR  +R
Sbjct:   80 CSLTVLRDRTLRRLLPSQFTGDQWKYYWGITESDKFGKIYEAASATFFGLWTSWFLTFLIGLPAATVLGTVFLFYWILAPGLAAYRRNVSFRGTYFARTPRDDGVFGALFSGRVVRVGRIRQAREYN----RPEALVMSMEDESGRKLRVYAPILPSYKKVRPGMRCEGLVLSESPDFDELMGVSDVFVPDCGAWVGEYPYIDKVPFKAFLASRARRR 293
[Close]
BLAST of mRNA_P-littoralis_Contig142.84.1 vs. uniprot
Match: A0A6U4L5P1_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A6U4L5P1_9STRA)

HSP 1 Score: 130 bits (327), Expect = 3.110e-29
Identity = 73/218 (33.49%), Postives = 116/218 (53.21%), Query Frame = 3 
Query:  321 RGRSEVLRCGLTRLSGDAGHRVLPVLATRDQWSHYWGGSDVQRVGKLFEVTAVAFLGLWACYFASFFLGVATMTVIGTSFLFYWLLAPNVTSFRRNRALR-GSIAPFPGA----KGNSIAIFRARVASAKEEYHPVTGQPVFLRMVIEDEEGRALKFRTRTRPEYARIRQGMVAEAILVSPDERFDEILGVSDTFIPAANVWVGEYPYL--DKVVMRR 953
            R R+   R  L  +      R+     ++DQW H+WG +++ R  ++FEV  V+F GLW  +F +F +G    T+IGT F F+ L+AP   + RRN   R G +  F       +    A+F  R+   +     + G+   L++ +EDE+GR L+ R      +A + +G +  A+++S D  F  I  VSD FIPAA  W GEYPY+  +++ M+R
Sbjct:   81 RARAATPRMSLRPIDTPTLERLATQSVSKDQWLHFWGSNEMARASRIFEVALVSFFGLWTTWFLNFAIGPTVGTLIGTVFAFWGLIAPYFAAARRNADFREGLLDSFSSVWRPKRPLKTALFSGRIVRCERVVSDLKGRRFMLKLELEDEDGRLLQVRAPLHDRHADVMEGQLGLALMISEDPSFSTIERVSDVFIPAAQTWAGEYPYVRWERLPMQR 298
[Close]
BLAST of mRNA_P-littoralis_Contig142.84.1 vs. uniprot
Match: A0A7S3P7K6_9STRA (Hypothetical protein n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3P7K6_9STRA)

HSP 1 Score: 119 bits (298), Expect = 3.690e-25
Identity = 77/251 (30.68%), Postives = 127/251 (50.60%), Query Frame = 3 
Query:  312 RRRRGRSEVLRCGLTRLSGDAGHRVLPV-LATRDQWSHYWGGSDVQRVGKLFEVTAVAFLGLWACYFASFFLGVATMTVIGTSFLFYWLLAPNVTSFRRNRALRGS---IAPFPGAKGNSIAIFRA------------RVASAKEEY---------------HPVTGQPVFLRMVIEDEEGRALKFRTRTRPEYARIRQGMVAEAILVSPDERFDEILGVSDTFIPAANVWVGEYPYLDKVVMRRLLASRD 971
            RRRR  +  L   L  L  +   ++L V   T +Q++ YWG +  +R G++ E + V+FLG++  YF SF +G    T++GT F F+ +L+P   + +RN    G    + P+ G   +   ++ A              ++   EY                  TG+P  LR+ + D +GR L+  TR   EY  I+  M   AIL+S   +FD++  ++D F+P A+ W+G+YPYL++V ++ LLA  D
Sbjct:   81 RRRRTATFALEMALVPLPSEELEQLLSVGPPTGEQYATYWGRTPQERYGRILESSIVSFLGVFFSYFLSFVMGGFVATILGTLFFFWGILSPQFKAAQRNWEFLGGRQLVDPWKGGDPDGAGLYGALYLGFVDDVCVVEQSTDTREYDLADFEDYTMETDDLEQYTGEPYLLRVRLRDSKGRELQIHTRMSEEYLDIQTKMPVMAILLSTRRKFDKLAAITDLFVPEADCWIGDYPYLNRVEVQSLLAEDD 331
[Close]
BLAST of mRNA_P-littoralis_Contig142.84.1 vs. uniprot
Match: A0A1Z5JCW8_FISSO (Uncharacterized protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JCW8_FISSO)

HSP 1 Score: 102 bits (254), Expect = 5.260e-20
Identity = 67/225 (29.78%), Postives = 105/225 (46.67%), Query Frame = 3 
Query:  402 TRDQWSHYWGGSDVQRVGKLFEVTAVAFLGLWACYFASFFLGVATMTVIGTSFLFYWLLAPNVTSFRRNRALRG----------SIAPFPGAKGNSIAIFRARVASAK-----------------------EEYHPVTGQPVFLRMVIEDEEGRALKFRTRTRPEYA--RIRQGMVAEAILVSPDERFDEILGVSDTFIPAANVWVGEYPYLDKVVMRRLLASRD 971
            T  Q+S Y G +  +R G+L E + V FLG++  YF SF +G    T++G  F F+ +L+P   +++RN    G          +    P   G   A+F   +A                          +E   +TG+P  LR++  D  GR L+  TR   EY    +  G+   AIL+S    F  + G++D ++P  N+W+G+YPYLD+  M  +LA  D
Sbjct:   42 TGAQYSVYIGRTPRERFGRLIESSIVGFLGVFFSYFLSFVIGGFFATLLGCIFFFWGILSPEFQAYQRNWEFLGGRPLVDMEDTAAKKDPDKTGLYSALFVGHLADLAVVEDAISDVEYDLDDFRDYTMDGDELEKLTGRPYLLRVLARDRTGRELQIHTRMSEEYVDGALETGLPVTAILLSTKRNFSRLAGITDLYVPDVNLWLGDYPYLDREHMEAMLAEDD 266
[Close]
BLAST of mRNA_P-littoralis_Contig142.84.1 vs. uniprot
Match: A0A1E7FKW6_9STRA (Uncharacterized protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FKW6_9STRA)

HSP 1 Score: 93.6 bits (231), Expect = 1.700e-17
Identity = 64/221 (28.96%), Postives = 108/221 (48.87%), Query Frame = 3 
Query:  411 QWSHYWGGSDVQRVGKLFEVTAVAFLGLWACYFASFFLGVATMTVIGTSFLFYWLLAPNVTSFRRNRALRGS---IAPFPGAK--------GNSIAIFRARVA--------SAKEEYH---------------PVTGQPVFLRMVIEDEEGRALKFRTRTRPEYARIRQGMVAEAILVSPDERFDEILGVSDTFIPAANVWVGEYPYLDKVVMRRLLASRD 971
            Q++ YWG +  +   +L E + + F+G++  YF SF +G    TV+G+ F F+ +L+P+  + +RN  L G    + P+            G   +I   R+         S+ EEY+                +TG P  +R+ I D+E R L+  +R + EY  I  GM    IL+S  + F+ +  +SD ++P A  +VG+YPYL++  +  L  S D
Sbjct:   24 QYATYWGQTKRETYNRLLESSIIGFIGIFFSYFLSFVVGSFLATVVGSLFAFWAILSPDFKARQRNWELLGGRQLVDPWINDNRREERDNAGLYGSILLGRIDDVCVVEDNSSIEEYNLNEFQDYKNDRDVLEEITGIPYLIRIKINDDENRELQIHSRLKEEYLNIEIGMPIAGILLSTSDTFESLSAMSDIYVPDAECFVGDYPYLNRPGIESLFESDD 244
[Close]
BLAST of mRNA_P-littoralis_Contig142.84.1 vs. uniprot
Match: A0A7S0CDT2_9STRA (Hypothetical protein n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0CDT2_9STRA)

HSP 1 Score: 92.8 bits (229), Expect = 2.530e-16
Identity = 64/235 (27.23%), Postives = 103/235 (43.83%), Query Frame = 3 
Query:  411 QWSHYWGGSDVQRVGKLFEVTAVAFLGLWACYFASFFLGVATMTVIGTSFLFYWLLAPNVTSFRRN------RAL----------------------RGSIAPFPGAKGNSIAIFRARVASA----------------------KEEYHPVTGQPVFLRMVIEDEEGRALKFRTRTRPEYARIRQGMVAEAILVSPDERFDEILGVSDTFIPAANVWVGEYPYLDKVVMRRLLAS 965
            Q+  YWG +  +    +FE  AV  LGL+  YF SF +G    T++G  F F+ LL P + +++RN      R L                      +G  A   G  G+      + V                         K++   +TG P  +R+ I+D  GR+++   R   EY  I++G     + +S D  F+ + G++D F+P A  +VG+YPYLD+  + R+L S
Sbjct:  115 QYGTYWGRTSRETYNAVFESVAVTVLGLFGSYFLSFVIGDGLATLMGAVFAFWTLLGPELKAYQRNWEFVGGRPLIDQWMDDEIMDNTFDIFGDEKEKGERAGNGGMYGSYYIAHVSNVGVVGNVNVLPSEEYPLSEFYDYTMEKDDAERITGLPWMIRLRIKDNSGRSMQVHARMSEEYLDIQEGQPVVCVFLSSDRSFEMLSGLTDFFVPDAGCYVGDYPYLDRPYLNRMLES 349
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig142.84.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KJB0_9PHAE3.750e-14366.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LTW7_ECTSI4.300e-12375.34Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835YT15_9STRA7.770e-4851.34Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
K8Z4E0_NANGC2.480e-4241.28Putative membrane protein n=1 Tax=Nannochloropsis ... [more]
K8Z4B4_NANGC7.050e-4241.28Putative membrane protein n=3 Tax=Monodopsidaceae ... [more]
A0A6U4L5P1_9STRA3.110e-2933.49Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A7S3P7K6_9STRA3.690e-2530.68Hypothetical protein n=1 Tax=Amphora coffeiformis ... [more]
A0A1Z5JCW8_FISSO5.260e-2029.78Uncharacterized protein n=2 Tax=Fistulifera solari... [more]
A0A1E7FKW6_9STRA1.700e-1728.96Uncharacterized protein n=1 Tax=Fragilariopsis cyl... [more]
A0A7S0CDT2_9STRA2.530e-1627.23Hypothetical protein n=1 Tax=Proboscia inermis Tax... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig142contigP-littoralis_Contig142:203031..210403 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LTW7
Model size2628
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons6
Evalue2.21e-128
EggNOG OGs2E2W9@1|root,2SA2H@2759|Eukaryota
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-12_004040.1
Cds size1551
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig142.84.1prot_P-littoralis_Contig142.84.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig142 203126..209421 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789666.629758-UTR-P-littoralis_Contig142:203030..2031251680789666.629758-UTR-P-littoralis_Contig142:203030..203125Pylaiella littoralis U1_48UTRP-littoralis_Contig142 203031..203125 +
1680789666.7059348-UTR-P-littoralis_Contig142:209421..2104031680789666.7059348-UTR-P-littoralis_Contig142:209421..210403Pylaiella littoralis U1_48UTRP-littoralis_Contig142 209422..210403 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789666.6414142-CDS-P-littoralis_Contig142:203125..2033521680789666.6414142-CDS-P-littoralis_Contig142:203125..203352Pylaiella littoralis U1_48CDSP-littoralis_Contig142 203126..203352 +
1680789666.6499348-CDS-P-littoralis_Contig142:206181..2064131680789666.6499348-CDS-P-littoralis_Contig142:206181..206413Pylaiella littoralis U1_48CDSP-littoralis_Contig142 206182..206413 +
1680789666.6587346-CDS-P-littoralis_Contig142:206763..2069101680789666.6587346-CDS-P-littoralis_Contig142:206763..206910Pylaiella littoralis U1_48CDSP-littoralis_Contig142 206764..206910 +
1680789666.6717215-CDS-P-littoralis_Contig142:207462..2076001680789666.6717215-CDS-P-littoralis_Contig142:207462..207600Pylaiella littoralis U1_48CDSP-littoralis_Contig142 207463..207600 +
1680789666.6807582-CDS-P-littoralis_Contig142:208101..2082001680789666.6807582-CDS-P-littoralis_Contig142:208101..208200Pylaiella littoralis U1_48CDSP-littoralis_Contig142 208102..208200 +
1680789666.6898057-CDS-P-littoralis_Contig142:208713..2094211680789666.6898057-CDS-P-littoralis_Contig142:208713..209421Pylaiella littoralis U1_48CDSP-littoralis_Contig142 208714..209421 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig142.84.1

>prot_P-littoralis_Contig142.84.1 ID=prot_P-littoralis_Contig142.84.1|Name=mRNA_P-littoralis_Contig142.84.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=517bp
MTCSTFTAPIADFFPTGRTLLPAFCSSAISFSALSRSQQKQQQQQQLRST
VAASTTSSSSLAVFSGGVRGTNRRRRGRSEVLRCGLTRLSGDAGHRVLPV
LATRDQWSHYWGGSDVQRVGKLFEVTAVAFLGLWACYFASFFLGVATMTV
IGTSFLFYWLLAPNVTSFRRNRALRGSIAPFPGAKGNSIAIFRARVASAK
EEYHPVTGQPVFLRMVIEDEEGRALKFRTRTRPEYARIRQGMVAEAILVS
PDERFDEILGVSDTFIPAANVWVGEYPYLDKVVMRRLLASRDLKRRQRMA
AAAAAADGDLAAFEEDDDDDTDEELDPITYRDSWTQTRLQKEEEEPAQRG
AGVPPARAGGDRDVFGSAANSMSDVGAYYREDEGEEPYFEGVGSSGFSAG
VREEEFDGGGGGGSGGSVGGSAAGRSGQRQQWERVSGRPRPRRRPPASAS
RSFEAEVEGGGDFYELGGGGGGRVGGETNIGSVRKGVSGGSGMPRRYGAG
EVRDASSITEGRKKGR*
back to top

mRNA from alignment at P-littoralis_Contig142:203031..210403+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig142.84.1 ID=mRNA_P-littoralis_Contig142.84.1|Name=mRNA_P-littoralis_Contig142.84.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=7373bp|location=Sequence derived from alignment at P-littoralis_Contig142:203031..210403+ (Pylaiella littoralis U1_48)
CCGAGATTGGAAAGCTTTGTTGTCTGCGCAGTGCGGTGTGGCGTGGCGTG
TGCTTTCACAGTGCGGCGCGAGGAAAACGTGCTGCTGTGATAGCTATGAC
GTGCAGCACGTTCACGGCACCCATTGCCGATTTCTTCCCTACAGGTCGTA
CTCTGCTTCCAGCGTTCTGTTCTTCGGCGATTTCGTTCTCTGCCCTGTCT
AGGAGTCAGCAGAAGCAGCAGCAGCAGCAGCAACTTCGAAGTACAGTGGC
AGCGTCGACGACGTCCTCGTCCTCCCTGGCTGTCTTCAGTGGCGGCGTCC
GTGGAACGAACAGAAGAAGAAGGTATGTCTATACTCAAGTATTGGTTCTC
TGCGGCCCGCAAGGCTGAAGAGGGTGCTTATACTTCCTCCATGTTGTGCT
GTACCTGGGATACTACTTGTACTTCGTCTCTACTTGTACAGCAGTAGTCT
GCACGTGTGACGTCTCCTATCCCGGCAGCTCTTTCAACTTCCTGCTGCGC
TGGTCCATACAGAAGTATTGGTCTTCTGCGGTCTCGAAGACTGGGGGCTT
CGTCTGTCCTTTGCAAGTAGGCCTAGGTGCTCCCTCACAACTCCATTGTT
GTAGTTTTAGTTTGGTACGTGTGACGTGTACTCTACCGGCACCTTCTTAC
ATCTGCGCGAAAGCGCGGCTCTCCTGGTTTGTACCCCTCTACTTCATCTT
ACACCATCGCCCCGCACGGTGGACACCAGCAACAACGACAGGAAGTGCTC
TGGTATCCTTCGGGTGAGCTTCAAGCGTTTCCCTCGCCAGTAGATCCTGC
CGTCATGGTTCAGTTCGCTTCCGATGTTTTCAAACTTGAACGGCCTTTTT
CTGTTATGGGACCTCTATGACCTCACTAAAATTCGAAAAAAACTTGAAAA
TCACCAAATTTAGGAATCGACCTTTCCGTGTGAGGCTGGATCTTATGGTC
CACGGATGTTGGCCCAAGGATCTTTAAACATATGAGGGCAACATCCGTGG
GCCGCAAAAACACACAGCCCATATTATGGGAAACACGGATTATTGTGGGC
ACGGATTTTGGCAAGGCCTATTTTTTATTGTATAGTTTCGAGAAGAAGCG
TGCAACTGCAACAGGGACACGGGCTTTGCGCATAATAATACAGCGGAGGA
GGAGGGCCCCGCACAGCAGCACAAGACACACTCACTCGTTCTCCTCACGA
CCACCGTAGCACGGAACGCCACACACACATACTGGTGCTTCCACGCACAA
CAGAAGACTGCTGCTGCTGTACAGCAGTAGCAGGCGTCCATGCCGGAATC
GTTGAATTAGAGGTCACCACGTACTACGTACGTCCGCGGAGAGGTACACA
GCAGCAGCAGTAGTATAGTCCACAGCAGCAGGATGAAAAATATCAATCGA
AAGTCTCCACAACATTGCTGAGAACAGAAGAGCGACGAGCTCCGCATGTC
GTTCGCGGCCTCCTACGTTCGAAGCAGGCTCCGTCGTGCGGCGGGTGTGG
GTTTGTGGTGTGGTAGGTGCTGTTGTTGGTGCGCCCGAGTTTGTCTGCGC
TCACAATAGAACAGCTCGGGGATGCGGCGTGACCCCGCTTTGTGGGTTTA
AAAAGACATTACAAAAGATCCTTGGCGAAAAATTCTTGGATGCCGAGCCA
CGGATGTTTGGCCCAACATCCTGGGAAAATGGTCCACGATGTTGGTCCAA
GAACTTTAAAGATTCTAAATCGCCAACATCCGTGTCCATAAGGTGACTTT
TCCTAGGGTCTTTAAAATCCTTGGCCCAACATCGTGGACCATAAGATCCA
GCCTGAATGAAGCCGACATCTTCAATGACACGAATTATCGGGAGAAGACA
TCATGCCTAGGCGACGTGTGTGTTGGCGCGCTCAGAGCTCTAGCTGGGGC
TGTGGTATCGGTGATCGAAGATATATCGTAAAGCAGTGTCCAGAAACCGT
CCGCATCCCGCAACCAAACATGTCAATTGATCTTCCACTGCTGAACTCGC
CGCCATGGGCCCCAATCTACTAAACTGCGCGTTGTCCGAGGCGGCAATGG
TACAAACTACTGCTGTAGACTCGCATCTCAGGACATTGGGGCCGATGGCG
GCGAGCACAGCAGTGGAAGATCATGTGTTTGATCTCAGGCCGAGATGCGG
ATAGTCTCTCGACTGGTGTATCGCACATCTTCAACCACCGATAGCACAGC
CCTAGCAGAAGCTCTAAGCGTGCCAACATACACGCCGCCTATTCATGATG
TCTCCTACCGATATCAATCGTCATGTCCGCTTCGTTTACACCCCAGGTCT
TGTTTGAGCGCCCTCTCGTGCTCACTATTTTGTCTTGAATTCAGCCTGCA
GAGAGCTTATCATGTTGTATTTAGAGAGCGAAATTAACACGGAGTTCTGA
ACCACCACACTCGTGTCGCGATCGCTCCCCTACTGTACCATCATCTTCCA
GCCGTTGTTTCGGCCCCCAACCCTGTTATAGTGGTCTGATGATCCTCTTT
CGTGAAGATTTGGGTGTTCTTTGCAACATTCCAAAATTTGGCAAAATTGG
TAAGGTTGACATCAATGTGGTTTGACCTGATTTAGTGAACAAGAACTTGT
ACTCGTAAGAAAATGTCTTGAGGAAAGTGAAAATGGGTGCATTATAAAAG
TCCATAATACGATCCTCCCCAGACCCCGAAGAATTCGCTCCGAATGTGTC
GCACCACCTCAACCATGCTCCATCAATGCCCCCGCGCCCCGGGATGACTG
GACCACCGGTACCGTTATCTCTCCGTCCAACAGCTGAAAAATACTTTCCA
CCGGGCTCCTGTTTGATGGGCGCATTTTTCTTTCTCATGGTCACGATACG
CTCAGAGAGAGGTGCGACGAATATCCACGTTTATATCCACCTGGTACTAG
GCTTTCCCTCGCCCCTCGCGAAGGGGATATGATACCGAACGCTAAACACA
CACCGTCATTTCCCTTCAAAAAACAAAAAAACACCTGAAGAACAAGCGTT
TTCCCTCTCGCGTCTCCTCATCAGCTGATGCTATTTTAACCGCCGGCATG
TCGTCATGATGTGTGACAGCTTGGGTCGCTTTGCCATAACCTATCATCCC
TCTGCTCTGTGTGCACGTACCGCATGTCACCACCGTCACGTTTTGGAGCA
GGGGTCGCTCAGAGGTGCTGCGGTGCGGTCTGACCCGTCTCTCGGGAGAT
GCTGGACACCGGGTGCTGCCGGTCCTGGCCACGCGCGACCAGTGGTCGCA
TTACTGGGGGGGGTCGGACGTTCAGCGAGTGGGCAAGTTGTTTGAGGTGA
CGGCAGTGGCCTTTCTGGGGCTGTGGGCTTGCTACTTCGCCAGCTTTTTC
TTGGGCGTAGCGACTATGACGGTAATCGGAACGGTGAGAGGCTCTATTGT
CGTGTAAATGCAAATAGTACGTTGTGCTTCCGCCCTCGGCAAAAGTTCTG
CACTTGAAGCGATGGCGTGCCGGCTCTTGTGAAGAATAAGGATTATAAAA
AGCCGATAGAGCATGCCGTGTGGTGAGCACAAGAGCGTCCCTGCACGGCG
GTACCACTTTTGGCTCTTGCCCTCGTGGCGCCGTATCGTCACTCTGTTGT
CACCACATGTTGTAGAGACCAGGGACGGCAGGCATTCTCGCATGAGTGCA
CCGCGATCCCCTTTCACCCTACCGACCCCCGTGTGCAACCTTGGCTTGGC
CGGACGGCGACCGCTTTCGAAAACGACGAGCAGTCTTTCCTGTTCTACTG
GCTGCTGGCGCCGAACGTAACCTCCTTTCGCCGAAATCGGGCGCTTCGCG
GGAGTATCGCCCCGTTCCCGGGAGCGAAGGGCAACTCTATCGCCATCTTC
AGGGCTCGCGTGGCTAGTGCCAAGGAAGAGGTGTGTGTGTGTTTGTGTGC
GGCGCCTATGCCTGTGAAGAGATGCGTAATTTCCCGCTCGGCAGCAAGCA
ACAAACTTATGATCTGAGAGAGAGCGTACGGGGACTCGTAATGTTGATTC
TGGAGCGACCCGGGCGCTGCCATCCGTTCGTTCCTGATTCTGAAGGAACT
TCGCAGGTGTCGGCGCAGCAGCACTTAACTCCGGAGCGGACGGTAGATAT
TTTGGCAGAACGAGAAATAGATGTGAAACCGCGCTGAAAGTGCACGTGAG
GTTGCGGCGAGGGGGTGTGCCGGATGTACTCTTTTTGACACAGCATACAT
ACCTCTTCCCGATGTACTCTTATTGACACAACATATATACCCCTTCCCCG
CGCCTTACAGGCAGTGTCAGCGCTGTCAATCGTTGTACATGCATGCATGA
GATAAAGCCGTGGTACTGCACTCAAATAAGCGGCATCGCGTCCGTATTCG
TCGCTCGTACTGTCTGCTCTCTACGGGAACAACCGCGTGTTCTTCTTCCT
CGCCGGGCTCCTTCCTCTCTCGCACGCAACAGTACCACCCGGTCACCGGG
CAGCCCGTTTTCCTGCGCATGGTGATCGAAGATGAGGAAGGTCGGGCACT
CAAATTTCGAACGCGCACGAGGCCGGAGTACGCTCGCATCCGGCAGGGCA
TGGTGGCCGAGGCAATCCTGGTGAGACACGAAAATTGAAAAACAATTCGA
TTTTTTAATTGTTGGACGAGGAGGATATATGCCCGAAGTGCGTGCACGTG
TGTCGAATTCGATTTCGATTTGATGTAACGCGATTGCCTCGTGTGGCAAG
TAGAGCGAAAGCACTGCCTCGAGCTGTGGTTTTTTTTTTTTGTCTTGTCT
TGAGCTCGGTAAGGGAGGCATAACGATACTCGTCGTCCGTGACGACGTCG
CACACATACACCCAGATGGGTAACATGCATGCAGTGGCACTGGCTCCATG
CAGGCGTCAAATGGTGGAGTTGCAAATGCCGTGCTTTCTGGTGCCGGTTT
CATCTGGGTAGTCTTCCGAGAAGGCTCATTTGCGGCCTTCGCTTTTGAGG
CCTACCACACGGCGGGAGACGCTGTATATTCGGCGGTAGGTTTTTATAAT
TGTGCCTGTTTCGTGCGTGCTGGTTTTTGTGTACACGTGTGCGTTTGAAT
GTGTGCTCGTTCGCTCATCAGGTCAGCCCCGACGAACGATTCGACGAGAT
CCTGGGGGTGTCCGACACCTTCATCCCTGCCGCGAACGTTTGGGTTGGCG
AGTATCCCTATCTCGACAAGGTTAGTCAGGCAACTACTCGTGTCGCGAAG
GGCAAAGGAGGGTGTGTTCAACGCGATGTAGTGATTGGTTGTTGTCAAAC
CCCCTGAAGTCATTTCCCCTTCTTATTTCCAGGTGACGCTTGCTCGTGCA
ACATATGTGTACACCCCATGGTTTTTATCGATATTTTGTCTACCTTGTGC
TCACGTTCGCTGCATTACTCACAGTACTTGGTATTAATTTTTCGTCGAGA
ACGACAGTTTCGGAGCGATGGCAGAAGCTGAACCCGTACACTATGAATTG
GCCCAACCTCTTTTGTGTGTGTGTCATCGCGTCTCTTTGCGTAATGTGGT
GCATTGCCGCTGTCTACATTTACCGACATCCAGGCATGCAATGATGGTAA
GTGTTGGTCCGGGAGGGTCTGTAAATCTCTCATGTGTGACGTCCACTTTG
TGTCTCGTCTTCGCTTCCGCCATCACTGGCACGCCCGGTTTCTACCTGCC
ACCCCCCCCCCCTCCCGACCCATCCACATCCAGGTTGTGATGCGGCGCTT
GTTGGCGTCCCGCGACTTGAAGAGACGGCAGCGGATGGCCGCCGCCGCCG
CCGCGGCCGACGGGGATTTGGCGGCTTTCGAGGAAGACGACGACGACGAC
ACAGACGAAGAACTAGACCCGATTACCTACCGCGACTCGTGGACGCAGAC
TCGACTCCAGAAGGAGGAGGAGGAGCCGGCACAGCGAGGGGCCGGCGTGC
CGCCCGCGCGGGCAGGGGGAGACCGCGACGTTTTCGGCAGCGCCGCAAAC
AGCATGTCTGACGTTGGCGCGTACTACAGGGAAGACGAGGGCGAGGAGCC
CTACTTCGAGGGCGTGGGATCCTCGGGGTTCTCGGCTGGTGTCAGAGAAG
AAGAATTCGACGGCGGTGGGGGCGGGGGGTCGGGGGGCTCAGTGGGGGGC
TCAGCAGCGGGGCGCAGCGGCCAGCGGCAGCAGTGGGAGCGGGTGTCGGG
AAGACCCAGGCCGCGACGGCGGCCGCCCGCATCAGCGTCACGAAGTTTCG
AAGCAGAGGTTGAGGGCGGCGGTGACTTTTACGAGCTCGGCGGTGGCGGT
GGTGGACGTGTGGGAGGGGAGACGAATATTGGGAGCGTGCGGAAGGGTGT
GAGTGGAGGTAGCGGTATGCCGAGGCGGTACGGCGCGGGGGAAGTGCGAG
ACGCCTCTAGCATAACCGAGGGCCGCAAGAAGGGACGGTAGTTTAGTTTT
TGTGGCGTCGAGGTATTATACGAGCCAAACCAATTGTACAGCGGTTTTGG
TATCCACCACCGTTGTTGCGAGTTGTGATGCAGTTGACGGCGGCTGCTGT
AAGCAAGATTGAGTTGTTTCGTCCGGGACTGCTATAAACGTTTCCCTTCA
GAAAGCTGATCGGTCGACACAGCAGTAGCGTCGTTTTTTTTTGTTCATAG
TTCCAGGGGTCCTCTCGGTAACGACTCTTGATGTCGTAAAGTTTTACCGC
GGTAGTCAACAAACGCGGTATTCCACGGGTTTTTTTGTTCGGTACTCGAG
TCCCTCGCTAACTGCTACCGCGGTACTCAACGACCGCGGTAATGCGCGGT
AATTTTTCCACGGTAATTGGCCAACGCGGTAATCATTACCGCGGCACTCA
ACCACCGCGGTAATTTCGCGGTATTTTTCTACGGTAATTGATCACCACGG
TAATTATTTCCGCGGTAATCAGCCGCCGGGTTTATGTACATACAGTACCA
GCGTATGATGCGGCGAAGGGAGTACGTGCACAGCAAGAAGAAGATAACGA
GAGGACGGCCGAAATATGTCAACTACTTCATAACCGCGAGTTGACTACTA
CTCTCAACCAAATAAAACCAAAACTCACCAAACAAAGGCGTGAAAGAGCC
TACCCCCGTCCCAGAAACTAATGTTTACACCTGGACACATGTGGTCCACA
GTACATGTCCACACAGCAGTAACGTCTGCAAAACGGCAGTTTCAACACAC
CCATATTATACTTCGTATGATCGTAAACAGCACACAGCAGAATCATAGCC
TCAAGGTCGGTGACAAAACCAGTGATCCTTCACGCGTCATTGCTGACACC
TCCGACATTGGCGCCTCCTTCCATGACTGCTGGCCTACCCACGGCGTGTT
GTTGTTTGGTGGTGTCTTGAGTGACGCGTGGTGGTTCTGAACCACCAAAA
CAATTCTTAAATACAATCAAATA
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig142:203031..210403+

>mRNA_P-littoralis_Contig142.84.1 ID=mRNA_P-littoralis_Contig142.84.1|Name=mRNA_P-littoralis_Contig142.84.1|organism=Pylaiella littoralis U1_48|type=CDS|length=1551bp|location=Sequence derived from alignment at P-littoralis_Contig142:203031..210403+ (Pylaiella littoralis U1_48)
ATGACGTGCAGCACGTTCACGGCACCCATTGCCGATTTCTTCCCTACAGG
TCGTACTCTGCTTCCAGCGTTCTGTTCTTCGGCGATTTCGTTCTCTGCCC
TGTCTAGGAGTCAGCAGAAGCAGCAGCAGCAGCAGCAACTTCGAAGTACA
GTGGCAGCGTCGACGACGTCCTCGTCCTCCCTGGCTGTCTTCAGTGGCGG
CGTCCGTGGAACGAACAGAAGAAGAAGGGGTCGCTCAGAGGTGCTGCGGT
GCGGTCTGACCCGTCTCTCGGGAGATGCTGGACACCGGGTGCTGCCGGTC
CTGGCCACGCGCGACCAGTGGTCGCATTACTGGGGGGGGTCGGACGTTCA
GCGAGTGGGCAAGTTGTTTGAGGTGACGGCAGTGGCCTTTCTGGGGCTGT
GGGCTTGCTACTTCGCCAGCTTTTTCTTGGGCGTAGCGACTATGACGGTA
ATCGGAACGTCTTTCCTGTTCTACTGGCTGCTGGCGCCGAACGTAACCTC
CTTTCGCCGAAATCGGGCGCTTCGCGGGAGTATCGCCCCGTTCCCGGGAG
CGAAGGGCAACTCTATCGCCATCTTCAGGGCTCGCGTGGCTAGTGCCAAG
GAAGAGTACCACCCGGTCACCGGGCAGCCCGTTTTCCTGCGCATGGTGAT
CGAAGATGAGGAAGGTCGGGCACTCAAATTTCGAACGCGCACGAGGCCGG
AGTACGCTCGCATCCGGCAGGGCATGGTGGCCGAGGCAATCCTGGTCAGC
CCCGACGAACGATTCGACGAGATCCTGGGGGTGTCCGACACCTTCATCCC
TGCCGCGAACGTTTGGGTTGGCGAGTATCCCTATCTCGACAAGGTTGTGA
TGCGGCGCTTGTTGGCGTCCCGCGACTTGAAGAGACGGCAGCGGATGGCC
GCCGCCGCCGCCGCGGCCGACGGGGATTTGGCGGCTTTCGAGGAAGACGA
CGACGACGACACAGACGAAGAACTAGACCCGATTACCTACCGCGACTCGT
GGACGCAGACTCGACTCCAGAAGGAGGAGGAGGAGCCGGCACAGCGAGGG
GCCGGCGTGCCGCCCGCGCGGGCAGGGGGAGACCGCGACGTTTTCGGCAG
CGCCGCAAACAGCATGTCTGACGTTGGCGCGTACTACAGGGAAGACGAGG
GCGAGGAGCCCTACTTCGAGGGCGTGGGATCCTCGGGGTTCTCGGCTGGT
GTCAGAGAAGAAGAATTCGACGGCGGTGGGGGCGGGGGGTCGGGGGGCTC
AGTGGGGGGCTCAGCAGCGGGGCGCAGCGGCCAGCGGCAGCAGTGGGAGC
GGGTGTCGGGAAGACCCAGGCCGCGACGGCGGCCGCCCGCATCAGCGTCA
CGAAGTTTCGAAGCAGAGGTTGAGGGCGGCGGTGACTTTTACGAGCTCGG
CGGTGGCGGTGGTGGACGTGTGGGAGGGGAGACGAATATTGGGAGCGTGC
GGAAGGGTGTGAGTGGAGGTAGCGGTATGCCGAGGCGGTACGGCGCGGGG
GAAGTGCGAGACGCCTCTAGCATAACCGAGGGCCGCAAGAAGGGACGGTA
G
back to top