mRNA_P-littoralis_Contig142.3.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig142.3.1
Unique NamemRNA_P-littoralis_Contig142.3.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig142.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig142contigP-littoralis_Contig142:9548..10129 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size569
Hectar predicted targeting categoryother localisation
Exons2
Cds size567
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789664.3262515-CDS-P-littoralis_Contig142:9548..97941680789664.3262515-CDS-P-littoralis_Contig142:9548..9794Pylaiella littoralis U1_48CDSP-littoralis_Contig142 9549..9794 -
1680789664.3357282-CDS-P-littoralis_Contig142:9808..101291680789664.3357282-CDS-P-littoralis_Contig142:9808..10129Pylaiella littoralis U1_48CDSP-littoralis_Contig142 9809..10129 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig142.3.1prot_P-littoralis_Contig142.3.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig142 9549..10129 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig142.3.1

>prot_P-littoralis_Contig142.3.1 ID=prot_P-littoralis_Contig142.3.1|Name=mRNA_P-littoralis_Contig142.3.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=189bp
PSKRQVDEVFVHSGVPVSGAGSVSSVVLPLETGLVDTRSRPAASLAFRFA
QMQIDDHVRTLQNLPDAHTEQPFTPQPHPAAPHTPSPSPHPEQLQLLTLI
LASMQHQPCATTAVAPHATRCPPFSSTPSNRGRPNCSITIPTTVAVVPAL
PLPPPPLQPTLLSPQQPPLLSTAVDFGPPPPPPPQQPPR
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mRNA from alignment at P-littoralis_Contig142:9548..10129-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig142.3.1 ID=mRNA_P-littoralis_Contig142.3.1|Name=mRNA_P-littoralis_Contig142.3.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=582bp|location=Sequence derived from alignment at P-littoralis_Contig142:9548..10129- (Pylaiella littoralis U1_48)
CCATCAAAAAGGCAAGTGGATGAAGTGTTTGTGCATTCTGGTGTGCCAGT
TTCGGGTGCGGGTAGTGTGTCGTCGGTCGTGCTGCCGTTGGAGACGGGTT
TGGTTGATACCCGTTCACGTCCTGCCGCGTCGCTCGCTTTTCGTTTTGCC
CAAATGCAAATCGACGATCACGTCCGCACCCTGCAGAACCTACCCGATGC
ACACACTGAACAGCCTTTCACTCCGCAGCCACACCCGGCAGCACCACACA
CCCCTTCTCCATCACCCCATCCCGAACAACTCCAGTTGTTAACCCTAATA
TTAGCGTCCATGCAGCACCAGCTTTCTTCCTCCGCCCCTGTGCCACCACC
GCCGTAGCTCCACATGCCACGCGATGCCCCCCATTCAGTAGCACACCCTC
CAACCGCGGTAGACCCAACTGCAGTATCACCATCCCCACTACCGTAGCAG
TTGTCCCGGCCCTGCCGCTGCCGCCACCGCCGCTGCAGCCGACGTTGTTA
TCACCGCAGCAGCCACCGCTGCTGTCCACTGCAGTAGATTTTGGGCCGCC
ACCACCGCCGCCGCCGCAGCAGCCACCACGGC
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Coding sequence (CDS) from alignment at P-littoralis_Contig142:9548..10129-

>mRNA_P-littoralis_Contig142.3.1 ID=mRNA_P-littoralis_Contig142.3.1|Name=mRNA_P-littoralis_Contig142.3.1|organism=Pylaiella littoralis U1_48|type=CDS|length=567bp|location=Sequence derived from alignment at P-littoralis_Contig142:9548..10129- (Pylaiella littoralis U1_48)
CCATCAAAAAGGCAAGTGGATGAAGTGTTTGTGCATTCTGGTGTGCCAGT
TTCGGGTGCGGGTAGTGTGTCGTCGGTCGTGCTGCCGTTGGAGACGGGTT
TGGTTGATACCCGTTCACGTCCTGCCGCGTCGCTCGCTTTTCGTTTTGCC
CAAATGCAAATCGACGATCACGTCCGCACCCTGCAGAACCTACCCGATGC
ACACACTGAACAGCCTTTCACTCCGCAGCCACACCCGGCAGCACCACACA
CCCCTTCTCCATCACCCCATCCCGAACAACTCCAGTTGTTAACCCTAATA
TTAGCGTCCATGCAGCACCAGCCCTGTGCCACCACCGCCGTAGCTCCACA
TGCCACGCGATGCCCCCCATTCAGTAGCACACCCTCCAACCGCGGTAGAC
CCAACTGCAGTATCACCATCCCCACTACCGTAGCAGTTGTCCCGGCCCTG
CCGCTGCCGCCACCGCCGCTGCAGCCGACGTTGTTATCACCGCAGCAGCC
ACCGCTGCTGTCCACTGCAGTAGATTTTGGGCCGCCACCACCGCCGCCGC
CGCAGCAGCCACCACGG
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