mRNA_P-littoralis_Contig142.28.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig142.28.1
Unique NamemRNA_P-littoralis_Contig142.28.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig142.28.1 vs. uniprot
Match: A0A6H5JYE1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYE1_9PHAE)

HSP 1 Score: 55.5 bits (132), Expect = 6.380e-6
Identity = 29/57 (50.88%), Postives = 36/57 (63.16%), Query Frame = 2 
Query:  197 TEKIGECARI-----NEPVLASQYPSWLQSDSKAAWNGIATNLDMKVAADNG*AGET 352
            TEK+GEC+R       +PV A QY  WL++D KAA NGIA  L M+V AD    G+T
Sbjct:  561 TEKLGECSRTFDPKSTDPVTALQYGPWLRADRKAARNGIAAYLAMRVLADEVWTGDT 617
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BLAST of mRNA_P-littoralis_Contig142.28.1 vs. uniprot
Match: A0A6H5KTD3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTD3_9PHAE)

HSP 1 Score: 55.1 bits (131), Expect = 8.350e-6
Identity = 28/57 (49.12%), Postives = 37/57 (64.91%), Query Frame = 2 
Query:  197 TEKIGECARI-----NEPVLASQYPSWLQSDSKAAWNGIATNLDMKVAADNG*AGET 352
            TEK+GEC+R       +PV + QY  WL++D KAA +GIA NL M+V AD    G+T
Sbjct:  288 TEKLGECSRTFDPKSTDPVPSLQYGPWLRADGKAARDGIAANLAMRVLADEVWTGDT 344
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BLAST of mRNA_P-littoralis_Contig142.28.1 vs. uniprot
Match: A0A6H5JAK2_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAK2_9PHAE)

HSP 1 Score: 55.1 bits (131), Expect = 8.370e-6
Identity = 28/57 (49.12%), Postives = 37/57 (64.91%), Query Frame = 2 
Query:  197 TEKIGECARI-----NEPVLASQYPSWLQSDSKAAWNGIATNLDMKVAADNG*AGET 352
            TEK+GEC+R       +PV + QY  WL++D KAA +GIA NL M+V AD    G+T
Sbjct:  342 TEKLGECSRTFDPKSTDPVPSLQYGPWLRADGKAARDGIAANLAMRVLADEVWTGDT 398
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BLAST of mRNA_P-littoralis_Contig142.28.1 vs. uniprot
Match: A0A6H5KTG2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTG2_9PHAE)

HSP 1 Score: 55.1 bits (131), Expect = 9.000e-6
Identity = 28/57 (49.12%), Postives = 37/57 (64.91%), Query Frame = 2 
Query:  197 TEKIGECARI-----NEPVLASQYPSWLQSDSKAAWNGIATNLDMKVAADNG*AGET 352
            TEK+GEC+R       +PV + QY  WL++D KAA +GIA NL M+V AD    G+T
Sbjct:  431 TEKLGECSRTFDPKSTDPVPSLQYGPWLRADGKAARDGIAANLAMRVLADEVWTGDT 487
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BLAST of mRNA_P-littoralis_Contig142.28.1 vs. uniprot
Match: A0A6H5L6D9_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6D9_9PHAE)

HSP 1 Score: 55.1 bits (131), Expect = 9.440e-6
Identity = 28/57 (49.12%), Postives = 37/57 (64.91%), Query Frame = 2 
Query:  197 TEKIGECARI-----NEPVLASQYPSWLQSDSKAAWNGIATNLDMKVAADNG*AGET 352
            TEK+GEC+R       +PV + QY  WL++D KAA +GIA NL M+V AD    G+T
Sbjct: 1450 TEKLGECSRTFDPKSTDPVPSLQYGPWLRADGKAARDGIAANLAMRVLADEVWTGDT 1506
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BLAST of mRNA_P-littoralis_Contig142.28.1 vs. uniprot
Match: A0A6H5JZK8_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZK8_9PHAE)

HSP 1 Score: 51.6 bits (122), Expect = 6.130e-5
Identity = 27/57 (47.37%), Postives = 36/57 (63.16%), Query Frame = 2 
Query:  197 TEKIGECARINEP-----VLASQYPSWLQSDSKAAWNGIATNLDMKVAADNG*AGET 352
            TEK GEC+R ++P     V + QY  WL++D KAA +GIA  L M+V AD    G+T
Sbjct:  136 TEKFGECSRTSDPKSTDLVPSLQYGPWLRADGKAARDGIAAYLAMRVLADEVWTGDT 192
[Close]
BLAST of mRNA_P-littoralis_Contig142.28.1 vs. uniprot
Match: A0A6H5JJH5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJH5_9PHAE)

HSP 1 Score: 52.0 bits (123), Expect = 9.540e-5
Identity = 27/51 (52.94%), Postives = 35/51 (68.63%), Query Frame = 2 
Query:  197 TEKIGECARI-----NEPVLASQYPSWLQSDSKAAWNGIATNLDMKVAADN 334
            TEK+ EC+R        PV + QY SWL++D KAA +GIATNL M+V AD+
Sbjct:  118 TEKLEECSRTFDPKSTNPVPSLQYGSWLRTDVKAARDGIATNLVMRVLADD 168
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig142.28.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
A0A6H5JYE1_9PHAE6.380e-650.88Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KTD3_9PHAE8.350e-649.12Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JAK2_9PHAE8.370e-649.12Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5KTG2_9PHAE9.000e-649.12Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L6D9_9PHAE9.440e-649.12Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JZK8_9PHAE6.130e-547.37Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5JJH5_9PHAE9.540e-552.94Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig142contigP-littoralis_Contig142:57420..57911 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size492
Hectar predicted targeting categoryother localisation
Exons1
Cds size210
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789665.6937375-UTR-P-littoralis_Contig142:57419..575491680789665.6937375-UTR-P-littoralis_Contig142:57419..57549Pylaiella littoralis U1_48UTRP-littoralis_Contig142 57420..57549 +
1680789665.728614-UTR-P-littoralis_Contig142:57759..579111680789665.728614-UTR-P-littoralis_Contig142:57759..57911Pylaiella littoralis U1_48UTRP-littoralis_Contig142 57760..57911 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789665.716957-CDS-P-littoralis_Contig142:57549..577591680789665.716957-CDS-P-littoralis_Contig142:57549..57759Pylaiella littoralis U1_48CDSP-littoralis_Contig142 57550..57759 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig142.28.1prot_P-littoralis_Contig142.28.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig142 57550..57759 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig142.28.1

>prot_P-littoralis_Contig142.28.1 ID=prot_P-littoralis_Contig142.28.1|Name=mRNA_P-littoralis_Contig142.28.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=70bp
MCLSVEQSGSRGVCATHTTSAATEKIGECARINEPVLASQYPSWLQSDSK
AAWNGIATNLDMKVAADNG*
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mRNA from alignment at P-littoralis_Contig142:57420..57911+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig142.28.1 ID=mRNA_P-littoralis_Contig142.28.1|Name=mRNA_P-littoralis_Contig142.28.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=492bp|location=Sequence derived from alignment at P-littoralis_Contig142:57420..57911+ (Pylaiella littoralis U1_48)
TCGAGGTACTACAAGCGCCGTAGCCGATCCCACGTCCCCGTGGAGCCTTT
CCGACCGCCTGCCTGCACCTCGCAGCAGAGTAGCAGCGAATACATAAGAG
GACCGTGAAAGTAAGACCCATGCCAACTCCATGTGCCTCAGTGTTGAGCA
GAGTGGATCGCGCGGGGTCTGCGCAACGCACACAACAAGCGCCGCTACAG
AGAAGATCGGGGAGTGCGCTCGGATAAATGAACCAGTTCTTGCGTCACAA
TACCCGTCGTGGCTCCAATCCGACTCGAAGGCAGCTTGGAATGGGATCGC
TACGAATCTCGACATGAAGGTAGCAGCAGACAATGGGTAGGCAGGGGAAA
CGGACGAAATCAAAACGTGGTTCATTCAGTGTCGGCACGTGGTTTATTCA
GTGTCGGCGGTGGGCCTGGTTTGGATAAGGGCAGAGAGACAGGCATCGGT
GCCCGGGGTCTCGGTGTTACCAATGAGGAAGGAGGGACGGAG
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Coding sequence (CDS) from alignment at P-littoralis_Contig142:57420..57911+

>mRNA_P-littoralis_Contig142.28.1 ID=mRNA_P-littoralis_Contig142.28.1|Name=mRNA_P-littoralis_Contig142.28.1|organism=Pylaiella littoralis U1_48|type=CDS|length=210bp|location=Sequence derived from alignment at P-littoralis_Contig142:57420..57911+ (Pylaiella littoralis U1_48)
ATGTGCCTCAGTGTTGAGCAGAGTGGATCGCGCGGGGTCTGCGCAACGCA
CACAACAAGCGCCGCTACAGAGAAGATCGGGGAGTGCGCTCGGATAAATG
AACCAGTTCTTGCGTCACAATACCCGTCGTGGCTCCAATCCGACTCGAAG
GCAGCTTGGAATGGGATCGCTACGAATCTCGACATGAAGGTAGCAGCAGA
CAATGGGTAG
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