mRNA_P-littoralis_Contig142.150.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig142.150.1
Unique NamemRNA_P-littoralis_Contig142.150.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig142.150.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig142contigP-littoralis_Contig142:458292..458991 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size498
Hectar predicted targeting categoryother localisation
Exons2
Cds size315
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789664.66927-UTR-P-littoralis_Contig142:458291..4584741680789664.66927-UTR-P-littoralis_Contig142:458291..458474Pylaiella littoralis U1_48UTRP-littoralis_Contig142 458292..458474 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789664.6835763-CDS-P-littoralis_Contig142:458474..4587651680789664.6835763-CDS-P-littoralis_Contig142:458474..458765Pylaiella littoralis U1_48CDSP-littoralis_Contig142 458475..458765 -
1680789664.6936665-CDS-P-littoralis_Contig142:458967..4589911680789664.6936665-CDS-P-littoralis_Contig142:458967..458991Pylaiella littoralis U1_48CDSP-littoralis_Contig142 458968..458991 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig142.150.1prot_P-littoralis_Contig142.150.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig142 458475..458991 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig142.150.1

>prot_P-littoralis_Contig142.150.1 ID=prot_P-littoralis_Contig142.150.1|Name=mRNA_P-littoralis_Contig142.150.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=105bp
FGDKRTKHLQGSARSQQHQRKPKTGPHHLPQLLLQHRWLETTREAALRLL
GAKDRQDNLSVGSAERERTGAAAKNATAHAGSKSRVNGGWTPPRMTSNAA
SCPR*
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mRNA from alignment at P-littoralis_Contig142:458292..458991-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig142.150.1 ID=mRNA_P-littoralis_Contig142.150.1|Name=mRNA_P-littoralis_Contig142.150.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=700bp|location=Sequence derived from alignment at P-littoralis_Contig142:458292..458991- (Pylaiella littoralis U1_48)
TTCGGAGACAAGAGAACCAAACATGTGAGTCGTCTTGCCGAAACGTAACT
TTCAGAAAAGTACAGGAGGAACGCGACGCCCTCTGCTGCTGCTGTACAGA
AGAGGAGAGTACCGCTCAACTTCTGGAGTATTTCAAGTCCACACCAGCAG
TACGCACGGACATAATCAATCATCTGAGAGGCATGAAGATCGTTAGTACA
ACAAGAATGCCGTGCGTATTTTCCAGCTTCAGGGGTCGGCACGGTCGCAG
CAGCATCAAAGAAAGCCGAAAACGGGGCCCCACCATCTGCCACAACTTCT
ACTGCAGCATAGATGGCTGGAAACTACCAGAGAGGCTGCGCTACGTCTAC
TAGGAGCGAAAGATCGACAAGACAACCTCTCAGTGGGAAGCGCGGAGCGG
GAGAGAACTGGTGCAGCAGCGAAGAATGCTACAGCACACGCAGGGAGTAA
GTCTCGAGTAAACGGTGGCTGGACTCCACCAAGGATGACTTCGAACGCGG
CTTCATGTCCTAGATAGCGAACAACTCGCCCGAGAGAATACTCAAGAAAG
AAGCCAGGGGTCGTCAGGCTGGGACTGCTGATCAAAGGAAAACTCATCTA
TCTACCACATCAGCTACAAAAACGCTGTAAAAACCGCTTGGGGTTGCCAG
AAAAGTCGTGAAATCGGGTCGCTTCGGTATTACTTGGGATCGTCGGGGAC
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Coding sequence (CDS) from alignment at P-littoralis_Contig142:458292..458991-

>mRNA_P-littoralis_Contig142.150.1 ID=mRNA_P-littoralis_Contig142.150.1|Name=mRNA_P-littoralis_Contig142.150.1|organism=Pylaiella littoralis U1_48|type=CDS|length=315bp|location=Sequence derived from alignment at P-littoralis_Contig142:458292..458991- (Pylaiella littoralis U1_48)
TTCGGAGACAAGAGAACCAAACATCTTCAGGGGTCGGCACGGTCGCAGCA
GCATCAAAGAAAGCCGAAAACGGGGCCCCACCATCTGCCACAACTTCTAC
TGCAGCATAGATGGCTGGAAACTACCAGAGAGGCTGCGCTACGTCTACTA
GGAGCGAAAGATCGACAAGACAACCTCTCAGTGGGAAGCGCGGAGCGGGA
GAGAACTGGTGCAGCAGCGAAGAATGCTACAGCACACGCAGGGAGTAAGT
CTCGAGTAAACGGTGGCTGGACTCCACCAAGGATGACTTCGAACGCGGCT
TCATGTCCTAGATAG
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