mRNA_P-littoralis_Contig142.138.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig142.138.1
Unique NamemRNA_P-littoralis_Contig142.138.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig142.138.1 vs. uniprot
Match: D8LTY9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTY9_ECTSI)

HSP 1 Score: 253 bits (645), Expect = 1.770e-75
Identity = 151/250 (60.40%), Postives = 174/250 (69.60%), Query Frame = 1 
Query:  271 AALRGSGGDAPRDVASMKAEIAELQSGTTASLDRAIAAAQATGSIAAHTSTTLRDQRQQMGDIDAEARSIDGKLKQTGYNLKHGLTWRGALTSPFRRNKSKVTAAGGAR---GDISPVFKDDYTNNNDTSNQPTAPSHANNSXXXXXXXXXXXXXXXXLFKARAKAGAALAP--AAVETPKVPEHAPDGFETQLDTLDGLLDGLNLQAKAIGAELKQQNDGIEALGARVEPLRQETASQAKQIKRRFGVK 1005
            AA RG    +PRDVASMKAEIAELQ+GTTASLDRAIAAA+AT S+ A T  TL++QR+QMG+IDAEAR+IDG LK+TG+NLK+GLTWRGALT+PFRR               GDISPVFKDD+  +        AP+H  ++                    R KAGAA A         K+PE+ P+GFETQLDTLD LLDGL +QAK IGAELKQQN+GIE LG RVEPLRQETA QAKQIKRRFGVK
Sbjct:   26 AASRGGDDSSPRDVASMKAEIAELQAGTTASLDRAIAAAEATASVGARTQVTLKEQREQMGEIDAEARAIDGTLKRTGHNLKYGLTWRGALTAPFRRKXXXXXXXXXXXITGGDISPVFKDDFRQSTPPGG---APAHGGSTSSTPSPKKGGRLKFG---SPRKKAGAARAEEIGTKAASKLPENVPEGFETQLDTLDSLLDGLTVQAKEIGAELKQQNEGIEVLGERVEPLRQETAFQAKQIKRRFGVK 269
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig142.138.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LTY9_ECTSI1.770e-7560.40Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig142contigP-littoralis_Contig142:419394..421454 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size2061
Hectar predicted targeting categoryother localisation
Exons1
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-12_003830.1
Cds size825
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789669.2374263-UTR-P-littoralis_Contig142:419393..4204401680789669.2374263-UTR-P-littoralis_Contig142:419393..420440Pylaiella littoralis U1_48UTRP-littoralis_Contig142 419394..420440 -
1680789669.2611861-UTR-P-littoralis_Contig142:421265..4214541680789669.2611861-UTR-P-littoralis_Contig142:421265..421454Pylaiella littoralis U1_48UTRP-littoralis_Contig142 421266..421454 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789669.2484398-CDS-P-littoralis_Contig142:420440..4212651680789669.2484398-CDS-P-littoralis_Contig142:420440..421265Pylaiella littoralis U1_48CDSP-littoralis_Contig142 420441..421265 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig142.138.1prot_P-littoralis_Contig142.138.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig142 420441..421265 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig142.138.1

>prot_P-littoralis_Contig142.138.1 ID=prot_P-littoralis_Contig142.138.1|Name=mRNA_P-littoralis_Contig142.138.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=275bp
MASSPPDKQQQQQQLWSEKHKQTANGTAALRGSGGDAPRDVASMKAEIAE
LQSGTTASLDRAIAAAQATGSIAAHTSTTLRDQRQQMGDIDAEARSIDGK
LKQTGYNLKHGLTWRGALTSPFRRNKSKVTAAGGARGDISPVFKDDYTNN
NDTSNQPTAPSHANNSRSRSTGNRSTSPKKTSLFKARAKAGAALAPAAVE
TPKVPEHAPDGFETQLDTLDGLLDGLNLQAKAIGAELKQQNDGIEALGAR
VEPLRQETASQAKQIKRRFGVKSG*
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mRNA from alignment at P-littoralis_Contig142:419394..421454-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig142.138.1 ID=mRNA_P-littoralis_Contig142.138.1|Name=mRNA_P-littoralis_Contig142.138.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=2061bp|location=Sequence derived from alignment at P-littoralis_Contig142:419394..421454- (Pylaiella littoralis U1_48)
AGAGACCCAGGGACTGAGAAGAAACCGAGCTGTGAGAACCAGATCTTACC
CACACACCTATACCCGCACTGGACCGCAACCACCGCCGACGGTGGTCCTC
TGGTCACACTACTGAGGACTGAGGGCATTCGAGGCATTGAGAGGTGCGCG
TAGACGCAATATACTCACGCGCCCTTTGAAAAATATATCATGGCGTCAAG
CCCCCCTGACAAGCAGCAGCAGCAGCAGCAGCTGTGGTCGGAGAAACACA
AACAAACAGCCAACGGCACCGCTGCACTCAGGGGTAGTGGAGGCGATGCA
CCTCGCGACGTCGCCTCGATGAAGGCAGAGATCGCGGAGCTCCAGTCGGG
GACGACTGCCTCTCTGGACCGAGCAATAGCGGCGGCTCAAGCCACCGGCA
GCATTGCCGCCCACACTTCCACCACCCTGAGAGATCAGCGTCAGCAGATG
GGCGACATTGACGCCGAGGCTCGAAGCATAGACGGCAAGCTCAAGCAGAC
GGGCTACAACCTCAAGCACGGCCTCACCTGGCGTGGGGCTTTAACCTCGC
CGTTCCGGCGAAATAAATCTAAAGTTACAGCGGCGGGTGGGGCCAGGGGT
GACATCTCCCCTGTCTTCAAGGACGACTACACAAATAATAATGATACAAG
TAATCAGCCAACGGCTCCTAGCCATGCTAATAACAGCCGTAGTCGCAGTA
CAGGCAACAGAAGCACCAGCCCTAAGAAGACCAGCTTGTTCAAAGCACGG
GCGAAAGCGGGGGCGGCATTAGCACCAGCGGCGGTCGAGACACCGAAGGT
ACCGGAGCATGCTCCCGACGGATTCGAGACCCAGCTGGACACGCTCGATG
GCTTGCTGGATGGGTTGAACCTTCAGGCTAAGGCAATCGGTGCGGAGCTG
AAACAACAGAATGACGGAATCGAGGCCCTGGGGGCGCGCGTGGAGCCGCT
GCGGCAAGAAACGGCCTCCCAGGCAAAGCAAATCAAGCGTCGGTTTGGAG
TGAAAAGTGGTTGAATGGCAGCAGGAGAATTGATTGTACATCCTTGGCGA
GTGAGTGTGTGAAGAGGAGGTGATCACGTGTAGTCTGTAGTGTTGTATGT
GTATGATACTCGTACGTGTGTTGTCATCCCATATTCTCTGGCACACTAGT
CTGCAAACTACAGGCTAGGCCCATCGACGGGGTCACACAGGAGGAAGGTC
AACACAGGAGGAGTTACCCCCACCTTCCTTCTGCGGTACATGCGTGAGAT
TTTTCTCGCGAGCAGGGGTCCGCGGTCCCTACCCTCGTCGGCGAAGCCGA
ATCTGACGTACAACACTTCAAGTATCGTTGTAAGCACAGACTTCGTAGAT
CCCCAGTTTAATACCCTTCGCCCCCGTTGTTCCCACAGCAGTTTGCAAAC
ACATTGTTTGCTTGGTTGCTGCTGCTGTTGTCACCGCTGCGACTGTTGTT
TGGGATGCGCGTATCTCCCAGCGAAGCTCTCATCCGTAATATCAATCAGT
TGCAGGTGCAGTATTACATTTTTTGCACCTGGTATGCATGTTAGCCCGCA
AGGATCCTTTGGACTGGTGTTGTTCGCTGGAAGCGAAGAATGACAGCTGT
ACGCGAGCGCGTGTACAGTACCAGCTTCTGAGCTTCGCTTTTCCTAGATT
ATGGTGTCGTCTGAGGGCTGGTTGTCTGTGTATCGTACGATAGGTGTATG
ACCTGCCAAAAATCTGTACTGCAGCACAGGTTACAGCAGTGACAATCAAA
CGTGGTGGTATGATAGTGGTGTTCTGGGTCCGTACTATTTATACTGTTGT
ACTGTAAGGAAGGGGCGGCCATTTCATGCTCTCTGATCCCCCTCGAACTC
ACCCATCCACTGTTCTTGAGGCCCCTGGTGGTGGCCTGCGATGCTGCATG
TTGCGCGCACAGCAGTAGTAATCAGGTCTCTTGAACCGAATTATTTGTTT
TCGGAGACTCGCTGACATGAGAGGCACAAATGCCCATCTTGAGAGTAGCT
CGCGTGAATTTGAAGTGGTGGTCGGAGATTTGGCAAAGATATTGACACAT
TTCCAACGCTG
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Coding sequence (CDS) from alignment at P-littoralis_Contig142:419394..421454-

>mRNA_P-littoralis_Contig142.138.1 ID=mRNA_P-littoralis_Contig142.138.1|Name=mRNA_P-littoralis_Contig142.138.1|organism=Pylaiella littoralis U1_48|type=CDS|length=825bp|location=Sequence derived from alignment at P-littoralis_Contig142:419394..421454- (Pylaiella littoralis U1_48)
ATGGCGTCAAGCCCCCCTGACAAGCAGCAGCAGCAGCAGCAGCTGTGGTC
GGAGAAACACAAACAAACAGCCAACGGCACCGCTGCACTCAGGGGTAGTG
GAGGCGATGCACCTCGCGACGTCGCCTCGATGAAGGCAGAGATCGCGGAG
CTCCAGTCGGGGACGACTGCCTCTCTGGACCGAGCAATAGCGGCGGCTCA
AGCCACCGGCAGCATTGCCGCCCACACTTCCACCACCCTGAGAGATCAGC
GTCAGCAGATGGGCGACATTGACGCCGAGGCTCGAAGCATAGACGGCAAG
CTCAAGCAGACGGGCTACAACCTCAAGCACGGCCTCACCTGGCGTGGGGC
TTTAACCTCGCCGTTCCGGCGAAATAAATCTAAAGTTACAGCGGCGGGTG
GGGCCAGGGGTGACATCTCCCCTGTCTTCAAGGACGACTACACAAATAAT
AATGATACAAGTAATCAGCCAACGGCTCCTAGCCATGCTAATAACAGCCG
TAGTCGCAGTACAGGCAACAGAAGCACCAGCCCTAAGAAGACCAGCTTGT
TCAAAGCACGGGCGAAAGCGGGGGCGGCATTAGCACCAGCGGCGGTCGAG
ACACCGAAGGTACCGGAGCATGCTCCCGACGGATTCGAGACCCAGCTGGA
CACGCTCGATGGCTTGCTGGATGGGTTGAACCTTCAGGCTAAGGCAATCG
GTGCGGAGCTGAAACAACAGAATGACGGAATCGAGGCCCTGGGGGCGCGC
GTGGAGCCGCTGCGGCAAGAAACGGCCTCCCAGGCAAAGCAAATCAAGCG
TCGGTTTGGAGTGAAAAGTGGTTGA
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