mRNA_P-littoralis_Contig142.102.2 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig142.102.2
Unique NamemRNA_P-littoralis_Contig142.102.2
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
[Close]
BLAST of mRNA_P-littoralis_Contig142.102.2 vs. uniprot
Match: A0A6H5JX01_9PHAE (DUF155 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JX01_9PHAE)

HSP 1 Score: 518 bits (1335), Expect = 7.180e-174
Identity = 271/340 (79.71%), Postives = 289/340 (85.00%), Query Frame = 3 
Query:  270 ASFGVDHLEWMDSLYIDVIHSTTDLQGGLRKARDLERPAWEEDEYVVDGDXXXXXXXXXXXXXXXYGDVYGYGSDDYQRGDDGETAETPGRDENEGTDDVIARHKDVMFFPYGAVVFWGCTEAEEKAVLSSLTRFMVGTVSDTELAQSFDDMTFVYRHRGGKRSVPLKNDEITLDTRDPAEKLAYSCSLAQSAKLFVFEERLDNIIDTTAKYPQVLAATGKIPLTEVEIGRLVGRVLCEQNEVNLHSDILDTPEYFWEEDTWEPAYEALCAYLDIPLRVDNLNKRLSILRELLDVLSTQSTNAHATRLEVIIIYLIFAEVIVEVVWNVIIKDIFRLVGDS 1289
            AS GVD LEWMDSLYIDVIHSTTDL+GGLRKAR+LERPAWE DEY  DG+                 + YG G D  Q   DG T         +G DD + RHKD+MFFPYGAVVFWGC+EAEEK VLS+LTRFM+G VS+TELAQSFDDMTFVYRHRGGKR VPLKNDEITLDT+DPAEKLAYSCSLAQSAKLFVFEERLDNII+TTAKYPQVLAATGKIPLTEV+IGRLVGRVLCEQNEVNLHSDILDTPEYFWEED WEPAYEALCAYLDIPLRVDNLNKRLSILRELLDVLSTQSTNAHATRLEVII+YLIF EV +E+VWNVIIKD+ RLVG S
Sbjct:  254 ASPGVDGLEWMDSLYIDVIHSTTDLRGGLRKARELERPAWETDEYA-DGE-----------------EGYGDGYDQEQEEVDG-TGVGXXXXXEDGGDDAVTRHKDIMFFPYGAVVFWGCSEAEEKEVLSNLTRFMMGKVSETELAQSFDDMTFVYRHRGGKRGVPLKNDEITLDTQDPAEKLAYSCSLAQSAKLFVFEERLDNIIETTAKYPQVLAATGKIPLTEVQIGRLVGRVLCEQNEVNLHSDILDTPEYFWEEDAWEPAYEALCAYLDIPLRVDNLNKRLSILRELLDVLSTQSTNAHATRLEVIIVYLIFVEVAIELVWNVIIKDVLRLVGGS 574
[Close]
BLAST of mRNA_P-littoralis_Contig142.102.2 vs. uniprot
Match: D8LTX9_ECTSI (DUF155 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTX9_ECTSI)

HSP 1 Score: 309 bits (792), Expect = 2.590e-96
Identity = 169/233 (72.53%), Postives = 181/233 (77.68%), Query Frame = 3 
Query:  270 ASFGVDHLEWMDSLYIDVIHSTTDLQGGLRKARDLERPAWEEDEYVVDGDXXXXXXXXXXXXXXXYGDVYGYGSDDYQRGDDGETAETPGRD---ENEGTDDVIARHKDVMFFPYGAVVFWGCTEAEEKAVLSSLTRFMVGTVSDTELAQSFDDMTFVYRHRGGKRSVPLKNDEITLDTRDPAEKLAYSCSLAQSAKLFVFEERLDNIIDTTAKYPQVLAATGKIPLTEVEIG 959
            AS GVD LEWMDSLYIDVIHSTTDL+GGLRKAR+LERPAWE DE   DG+                 D YG G D                    E+EG DD + RHKD+MFFPYGAVVFWGC+EAEEK VLS+LTRFMVG VS+TELAQSFDDMTFVYRHRGGKR VPLKNDEITLDT+DPAEKLAYSCSLAQSAKLFVFEERLDNII+TTAKYPQVLAATGKIPLTEV+IG
Sbjct:  102 ASPGVDGLEWMDSLYIDVIHSTTDLRGGLRKARELERPAWEADE-SADGE-----------------DGYGDGYDQXXXXXXXXXXXXXXXXXXXEDEG-DDAVTRHKDIMFFPYGAVVFWGCSEAEEKEVLSNLTRFMVGKVSETELAQSFDDMTFVYRHRGGKRGVPLKNDEITLDTQDPAEKLAYSCSLAQSAKLFVFEERLDNIIETTAKYPQVLAATGKIPLTEVQIG 315
[Close]
BLAST of mRNA_P-littoralis_Contig142.102.2 vs. uniprot
Match: A0A835ZB52_9STRA (DUF155 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZB52_9STRA)

HSP 1 Score: 263 bits (672), Expect = 7.990e-77
Identity = 161/336 (47.92%), Postives = 202/336 (60.12%), Query Frame = 3 
Query:  297 WMDSLYIDVIHSTTDLQGGLRKARDLERPAWEEDEYVVDGDXXXXXXXXXXXXXXXYGDVYGYGSDDYQRGDDGETAETPGRD-ENEGTDD---VIARH--KDVMFFPYGAVVFWGCTEAEEKAVLSSLTRFMVGTVSDTELAQSFDDMTFVYRHRGG-KRSVPLKNDEITLDTRDPAEKLAYSCSLAQSAKLFVFEERLDNIIDTTAKYPQVLAATGKIPLTEVEIGRLVGRVLCEQNEVNLHSDILDTPEYFWEEDTWEPAYEALCAYLDIPLRVDNLNKRLSILRELLDVLSTQSTNAHATRLEVIIIYLIFAEVIVEVVWNVIIKDIFRLVG 1283
            W D LY DVIHSTTD           E PA  ED    +GD                       ++D Q   D E+     R+ E+E +      +  H  KD+   PYG ++FWG T AEE  +LS + +F VG VS++EL QS DDMTF +   G  K S  +K DE+ L T    EKL+YS +LAQSAKLFVFEERL NII+ T  YP+ L  TGKI LT++++ +L+GRVL E+NEVNLHSD+LD PE+FWE  TWEP Y+ LC YLD+PLR+  +NKRL +LRELLDVL  Q TN HA RLEV+          VE+VWNV ++DI  LVG
Sbjct:  153 WADVLYSDVIHSTTDKLL-------TEEPA--EDYATKEGDEN---------------------AEDSQAETDRESKYARDREREHERSQHSLLAVPSHIGKDMFILPYGCIIFWGFTPAEELKLLSEIRKFAVGPVSESELEQSQDDMTFCFVDAGDDKESRVIKADELVLSTDSALEKLSYSFALAQSAKLFVFEERLGNIIEQTRVYPEELKLTGKIQLTQMQMNKLIGRVLVERNEVNLHSDVLDKPEFFWETQTWEPEYQRLCTYLDMPLRLVVINKRLDVLRELLDVLHNQVTNTHAIRLEVV----------VELVWNVGVRDIMHLVG 448
[Close]
BLAST of mRNA_P-littoralis_Contig142.102.2 vs. uniprot
Match: A0A4D9D3S6_9STRA (DUF155 domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D3S6_9STRA)

HSP 1 Score: 231 bits (588), Expect = 1.840e-63
Identity = 123/232 (53.02%), Postives = 158/232 (68.10%), Query Frame = 3 
Query:  582 KDVMFFPYGAVVFWGCTEAEEKAVLSSLTRFMVGTVSDTELAQSFDDMTFVYRHRGGKRSVPLKNDEITLDTRDPAEKLAYSCSLAQSAKLFVFEERLDNIIDTTAKYPQVLAATGKIPLTEVEIGRLVGRVLCEQNEVNLHSDILDTPEYFWEEDTWEPAYEALCAYLDIPLRVDNLNKRLSILRELLDVLSTQSTNAHATRLEVIIIYLIFAEVIVEVVWNVIIKDIFRL 1277
            K +  FPYG  VFWGCT+ EE+  +S LT F V  VSD E  +S+DD  + Y       S  + + EITL + DP EKLA S SLAQSAKLFVFE+R+D  I +T   P  LA  GK  ++  EI +L G+V  E+NE+NLHSDILDTPE+FWE D WEP Y  LC YLD+P RV+ LNKRL ILRELL+VL TQ  N+H+T+LE+I+I LI  EV+++V+  + + D+  L
Sbjct:  339 KHIFCFPYGCTVFWGCTKEEEERFISMLTPFAVELVSDMEREESYDDFAYFYGS-----SPQILHYEITLTSNDPEEKLALSFSLAQSAKLFVFEDRVDGTITSTKHIPIHLAEFGKTNVSRKEISKLTGKVFLERNEINLHSDILDTPEWFWEADLWEPRYVGLCKYLDLPNRVNILNKRLDILRELLNVLETQLDNSHSTKLELIVIALIIVEVVLQVL-EIALNDLLHL 564
[Close]
BLAST of mRNA_P-littoralis_Contig142.102.2 vs. uniprot
Match: A0A3F2RCQ5_9STRA (DUF155 domain-containing protein n=2 Tax=Phytophthora TaxID=4783 RepID=A0A3F2RCQ5_9STRA)

HSP 1 Score: 207 bits (528), Expect = 1.390e-58
Identity = 115/234 (49.15%), Postives = 159/234 (67.95%), Query Frame = 3 
Query:  567 VIARHKDVMFFPYGAVVFWGCTEAEEKAVLSSLTRFMVGTVSDTELAQSFDDMTFVYRHRGGKRSVPLKNDEITLDTRDPAEKLAYSCSLAQSAKLFVFEERLDNIIDTTAKYPQVLAATGKIPLTEVEIGRLVGRVLCEQNEVNLHSDILDTPEYFWEEDTWEPAYEALCAYLDIPLRVDNLNKRLSILRELLDVLSTQSTNAHATRLEVIIIYLIFAEVIVEVVWNVIIKDI 1268
            V  + KD  +F  G  VFWG T AEE+A L +L  F VG V   E+    +DM ++Y    G  S+ + ND ITL +   +EKLA S ++AQS+KL VFEER+++ I  T   PQ LAATG I  ++ +I +L+GR+  E+++VNL+SD+LD P++FWE+D +EP Y+ +  YL +  RV  LN RL ILRELLDVLS Q  + H T+LE+I+I+LI AEV V+VVWN++IKDI
Sbjct:   11 VPYQQKDAFYFATGCAVFWGLTRAEEQAHLMALGTFSVGPVKQVEV----EDMDYMY----GDASI-ICNDAITLSSNRASEKLAVSFAMAQSSKLDVFEERVEDTIRETKHVPQNLAATGSIQYSQSDISKLIGRLFIERSDVNLNSDMLDEPDFFWEDDEYEPLYKKVMKYLSVDNRVQILNTRLDILRELLDVLSQQLAHQHDTKLEMIVIWLIVAEVAVQVVWNILIKDI 235
[Close]
BLAST of mRNA_P-littoralis_Contig142.102.2 vs. uniprot
Match: K3WZW5_GLOUD (DUF155 domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WZW5_GLOUD)

HSP 1 Score: 212 bits (540), Expect = 4.350e-58
Identity = 117/241 (48.55%), Postives = 160/241 (66.39%), Query Frame = 3 
Query:  558 TDDVIA----RHKDVMFFPYGAVVFWGCTEAEEKAVLSSLTRFMVGTVSDTELAQSFDDMTFVYRHRGGKRSVPLKNDEITLDTRDPAEKLAYSCSLAQSAKLFVFEERLDNIIDTTAKYPQVLAATGKIPLTEVEIGRLVGRVLCEQNEVNLHSDILDTPEYFWEEDTWEPAYEALCAYLDIPLRVDNLNKRLSILRELLDVLSTQSTNAHATRLEVIIIYLIFAEVIVEVVWNVIIKDI 1268
            TDD++     R KDV +F  G  VFWG T  EE+A L +L +F VG V   E+    +DM + Y       +  + ND ITL +   +EKLA S ++AQSAKL VFEER++  I  T   PQ LA TG I  ++ +I +L+GR+  E+++VNL+SD+LD P++FWE+D +EP Y+ +  YLD+  RV  LN RL ILRELLDVLS Q  + H T+LE I+I+LI AEV+V++VWN+IIKDI
Sbjct:  185 TDDMVVPVAYRQKDVFYFATGCTVFWGLTRMEEQAHLRALLQFSVGPVKQIEV----EDMDYTYGD-----ATSIVNDAITLSSNLASEKLAISFAMAQSAKLDVFEERVEETIQQTKHIPQNLATTGSIQYSQGDISKLIGRLFIERSDVNLNSDMLDEPDFFWEDDEYEPLYKKMMRYLDVDNRVQILNTRLDILRELLDVLSQQLAHQHDTKLEWIVIWLIVAEVVVQIVWNIIIKDI 416
[Close]
BLAST of mRNA_P-littoralis_Contig142.102.2 vs. uniprot
Match: A0A8K1CLV5_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CLV5_PYTOL)

HSP 1 Score: 211 bits (537), Expect = 8.790e-58
Identity = 118/249 (47.39%), Postives = 161/249 (64.66%), Query Frame = 3 
Query:  522 TAETPGRDENEGTDDVIARHKDVMFFPYGAVVFWGCTEAEEKAVLSSLTRFMVGTVSDTELAQSFDDMTFVYRHRGGKRSVPLKNDEITLDTRDPAEKLAYSCSLAQSAKLFVFEERLDNIIDTTAKYPQVLAATGKIPLTEVEIGRLVGRVLCEQNEVNLHSDILDTPEYFWEEDTWEPAYEALCAYLDIPLRVDNLNKRLSILRELLDVLSTQSTNAHATRLEVIIIYLIFAEVIVEVVWNVIIKDI 1268
            T   P  D N     +  + KDV +F  G  VFWG T AEE+A L +LT F VG V   E+    +DM + Y       S  + ND ITL++   +EKLA S ++AQSAKL VFEER++  I  T   PQ LA TG I  ++ +I +L+G++   +N+VNL+SD+LD PE+FWE+D ++P Y+ +  YLD+  RV  LN RL ILRELLDVL+ Q  + H T+LE I+I+LI AEV+V+VVWN++IKDI
Sbjct:  170 TCAPPVEDSNGDIISLPYQQKDVFYFGTGCTVFWGLTRAEEQAHLRTLTTFSVGPVKQVEV----EDMDYTYGE-----SSHIFNDSITLESNRASEKLAISFAMAQSAKLDVFEERVEETIQKTKHIPQNLATTGSIQYSQSDISKLIGQLFIVRNDVNLNSDMLDEPEFFWEDDEYQPLYKKMTKYLDVDNRVQILNTRLDILRELLDVLNQQLAHRHGTKLEWIVIWLIVAEVLVDVVWNMLIKDI 409
[Close]
BLAST of mRNA_P-littoralis_Contig142.102.2 vs. uniprot
Match: A0A7S2S7I6_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2S7I6_9STRA)

HSP 1 Score: 207 bits (526), Expect = 2.210e-57
Identity = 110/234 (47.01%), Postives = 153/234 (65.38%), Query Frame = 3 
Query:  576 RHKDVMFFPYGAVVFWGCTEAEEKAVLSSLTR-FMVGTVSDTELAQSFDDMTFVYRHRGG-----KRSVP---LKNDEITLDTRDPAEKLAYSCSLAQSAKLFVFEERLDNIIDTTAKYPQVLAATGKIPLTEVEIGRLVGRVLCEQNEVNLHSDILDTPEYFWEEDTWEPAYEALCAYLDIPLRVDNLNKRLSILRELLDVLSTQSTNAHATRLEVIIIYLIFAEVIVEVVWN 1250
            RHKD++FFP+G VVFWGC   EE  VLS L+  F     ++ EL +S D M F Y            + P   +  D++ L +  P EKLA S +LAQSAKLFVFE RLD  I++  + P+ LA +G + LT  E+ R++G++   + +VNLHSDILD PE+ WE + WEP++  LC+YLDI  RV+ LNKRL ++RELLDVL TQ  + +++RLE I+I LI  E++ EV+W+
Sbjct:   73 RHKDIIFFPFGCVVFWGCDHEEELGVLSFLSSAFSESLSTEAELQESHDTMAFTYNSNSAGPGNFAATTPRTRVLGDKVHLVSWHPLEKLAVSFALAQSAKLFVFEARLDVTINSVKRIPEELAESGSVSLTRNELSRMMGKLFIARTQVNLHSDILDEPEFLWEYEDWEPSFHKLCSYLDIDHRVELLNKRLDLIRELLDVLDTQLESKNSSRLEWIVIILIIIEILFEVLWD 306
[Close]
BLAST of mRNA_P-littoralis_Contig142.102.2 vs. uniprot
Match: A0A8K1CNT9_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CNT9_PYTOL)

HSP 1 Score: 210 bits (535), Expect = 3.850e-57
Identity = 117/245 (47.76%), Postives = 159/245 (64.90%), Query Frame = 3 
Query:  534 PGRDENEGTDDVIARHKDVMFFPYGAVVFWGCTEAEEKAVLSSLTRFMVGTVSDTELAQSFDDMTFVYRHRGGKRSVPLKNDEITLDTRDPAEKLAYSCSLAQSAKLFVFEERLDNIIDTTAKYPQVLAATGKIPLTEVEIGRLVGRVLCEQNEVNLHSDILDTPEYFWEEDTWEPAYEALCAYLDIPLRVDNLNKRLSILRELLDVLSTQSTNAHATRLEVIIIYLIFAEVIVEVVWNVIIKDI 1268
            P  ++ E    +  R KDV +F  G  VFWG T AEE+A L +L  F VG V   E+    +DM + Y       S  + ND ITL++   +EKLA S ++AQSAKL VFEER++  I  T   PQ LA TG I  ++ +I +L+GR+   +N+VNL+SD+LD P++FWE+D +EP Y+ +  YLD+  RV  LN RL ILRELLDVLS Q  + H T+LE I+I+LI AEV V++VWN++IKDI
Sbjct:  202 PPAEDGEDIVPLAYRQKDVFYFGTGCTVFWGLTRAEEQAHLRALMAFSVGPVKQVEV----EDMDYTYGE-----SSRIFNDAITLESNRASEKLAISFAMAQSAKLDVFEERVEETIQKTKHIPQNLATTGSIQYSQSDISKLIGRLFIVRNDVNLNSDMLDEPDFFWEDDEYEPLYKKMMKYLDVDNRVQILNTRLDILRELLDVLSQQLAHQHDTKLEWIVIWLIVAEVAVQIVWNILIKDI 437
[Close]
BLAST of mRNA_P-littoralis_Contig142.102.2 vs. uniprot
Match: A0A3R7J2K8_9STRA (DUF155 domain-containing protein n=6 Tax=Phytophthora TaxID=4783 RepID=A0A3R7J2K8_9STRA)

HSP 1 Score: 207 bits (528), Expect = 8.800e-57
Identity = 115/234 (49.15%), Postives = 159/234 (67.95%), Query Frame = 3 
Query:  567 VIARHKDVMFFPYGAVVFWGCTEAEEKAVLSSLTRFMVGTVSDTELAQSFDDMTFVYRHRGGKRSVPLKNDEITLDTRDPAEKLAYSCSLAQSAKLFVFEERLDNIIDTTAKYPQVLAATGKIPLTEVEIGRLVGRVLCEQNEVNLHSDILDTPEYFWEEDTWEPAYEALCAYLDIPLRVDNLNKRLSILRELLDVLSTQSTNAHATRLEVIIIYLIFAEVIVEVVWNVIIKDI 1268
            V  + KD  +F  G  VFWG T AEE+A L +L  F VG V   E+    +DM ++Y    G  S+ + ND ITL +   +EKLA S ++AQS+KL VFEER+++ I  T   PQ LAATG I  ++ +I +L+GR+  E+++VNL+SD+LD P++FWE+D +EP Y+ +  YL +  RV  LN RL ILRELLDVLS Q  + H T+LE+I+I+LI AEV V+VVWN++IKDI
Sbjct:  155 VPYQQKDAFYFATGCAVFWGLTRAEEQAHLMALGTFSVGPVKQVEV----EDMDYMY----GDASI-ICNDAITLSSNRASEKLAVSFAMAQSSKLDVFEERVEDTIRETKHVPQNLAATGSIQYSQSDISKLIGRLFIERSDVNLNSDMLDEPDFFWEDDEYEPLYKKVMKYLSVDNRVQILNTRLDILRELLDVLSQQLAHQHDTKLEMIVIWLIVAEVAVQVVWNILIKDI 379
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig142.102.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JX01_9PHAE7.180e-17479.71DUF155 domain-containing protein n=1 Tax=Ectocarpu... [more]
D8LTX9_ECTSI2.590e-9672.53DUF155 domain-containing protein n=1 Tax=Ectocarpu... [more]
A0A835ZB52_9STRA7.990e-7747.92DUF155 domain-containing protein n=1 Tax=Tribonema... [more]
A0A4D9D3S6_9STRA1.840e-6353.02DUF155 domain-containing protein n=2 Tax=Monodopsi... [more]
A0A3F2RCQ5_9STRA1.390e-5849.15DUF155 domain-containing protein n=2 Tax=Phytophth... [more]
K3WZW5_GLOUD4.350e-5848.55DUF155 domain-containing protein n=1 Tax=Globispor... [more]
A0A8K1CLV5_PYTOL8.790e-5847.39Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A7S2S7I6_9STRA2.210e-5747.01Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A8K1CNT9_PYTOL3.850e-5747.76Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A3R7J2K8_9STRA8.800e-5749.15DUF155 domain-containing protein n=6 Tax=Phytophth... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig142contigP-littoralis_Contig142:321114..327795 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LTX9
Preferred nameRMD1
PFAMsDUF155
Model size2132
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
GOsGO:0000322,GO:0000323,GO:0000324,GO:0000329,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005773,GO:0005774,GO:0005783,GO:0008150,GO:0008152,GO:0010467,GO:0012505,GO:0016020,GO:0031090,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044437,GO:0044444,GO:0044446,GO:0044464,GO:0071704,GO:0098588,GO:0098805,GO:0098852,GO:0140053
Exons9
Evalue1.51e-100
EggNOG OGsCOG1723@1|root,KOG2861@2759|Eukaryota
Ec32 ortholog descriptionProtein of unknown function DUF155
Ec32 orthologEc-12_003940.1
Descriptionpositive regulation of mitochondrial translation
Cds size1299
COG categoryH
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig142.102.2prot_P-littoralis_Contig142.102.2Pylaiella littoralis U1_48polypeptideP-littoralis_Contig142 321119..326886 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789667.9311774-UTR-P-littoralis_Contig142:321113..3211181680789667.9311774-UTR-P-littoralis_Contig142:321113..321118Pylaiella littoralis U1_48UTRP-littoralis_Contig142 321114..321118 +
1680789668.0190034-UTR-P-littoralis_Contig142:326886..3269371680789668.0190034-UTR-P-littoralis_Contig142:326886..326937Pylaiella littoralis U1_48UTRP-littoralis_Contig142 326887..326937 +
1680789668.0282748-UTR-P-littoralis_Contig142:326993..3274171680789668.0282748-UTR-P-littoralis_Contig142:326993..327417Pylaiella littoralis U1_48UTRP-littoralis_Contig142 326994..327417 +
1680789668.0374823-UTR-P-littoralis_Contig142:327442..3277951680789668.0374823-UTR-P-littoralis_Contig142:327442..327795Pylaiella littoralis U1_48UTRP-littoralis_Contig142 327443..327795 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789667.9432497-CDS-P-littoralis_Contig142:321118..3217541680789667.9432497-CDS-P-littoralis_Contig142:321118..321754Pylaiella littoralis U1_48CDSP-littoralis_Contig142 321119..321754 +
1680789667.9569693-CDS-P-littoralis_Contig142:322490..3225731680789667.9569693-CDS-P-littoralis_Contig142:322490..322573Pylaiella littoralis U1_48CDSP-littoralis_Contig142 322491..322573 +
1680789667.9681294-CDS-P-littoralis_Contig142:323527..3235851680789667.9681294-CDS-P-littoralis_Contig142:323527..323585Pylaiella littoralis U1_48CDSP-littoralis_Contig142 323528..323585 +
1680789667.9784565-CDS-P-littoralis_Contig142:324624..3248001680789667.9784565-CDS-P-littoralis_Contig142:324624..324800Pylaiella littoralis U1_48CDSP-littoralis_Contig142 324625..324800 +
1680789667.9895253-CDS-P-littoralis_Contig142:325119..3251801680789667.9895253-CDS-P-littoralis_Contig142:325119..325180Pylaiella littoralis U1_48CDSP-littoralis_Contig142 325120..325180 +
1680789667.9995925-CDS-P-littoralis_Contig142:325511..3256191680789667.9995925-CDS-P-littoralis_Contig142:325511..325619Pylaiella littoralis U1_48CDSP-littoralis_Contig142 325512..325619 +
1680789668.0087929-CDS-P-littoralis_Contig142:326709..3268861680789668.0087929-CDS-P-littoralis_Contig142:326709..326886Pylaiella littoralis U1_48CDSP-littoralis_Contig142 326710..326886 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig142.102.2

>prot_P-littoralis_Contig142.102.2 ID=prot_P-littoralis_Contig142.102.2|Name=mRNA_P-littoralis_Contig142.102.2|organism=Pylaiella littoralis U1_48|type=polypeptide|length=433bp
MAGVTGATATAAAASSSSARKQGQEDIFTGGRGIGSSNSTTTTTTAVGTI
GSVGRVNVDVESANDSAAQRGGAEAKMPPLLPPPPPPPASFGVDHLEWMD
SLYIDVIHSTTDLQGGLRKARDLERPAWEEDEYVVDGDDGGSSGGGGGGG
GGGYGDVYGYGSDDYQRGDDGETAETPGRDENEGTDDVIARHKDVMFFPY
GAVVFWGCTEAEEKAVLSSLTRFMVGTVSDTELAQSFDDMTFVYRHRGGK
RSVPLKNDEITLDTRDPAEKLAYSCSLAQSAKLFVFEERLDNIIDTTAKY
PQVLAATGKIPLTEVEIGRLVGRVLCEQNEVNLHSDILDTPEYFWEEDTW
EPAYEALCAYLDIPLRVDNLNKRLSILRELLDVLSTQSTNAHATRLEVII
IYLIFAEVIVEVVWNVIIKDIFRLVGDSAAPR*
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mRNA from alignment at P-littoralis_Contig142:321114..327795+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig142.102.2 ID=mRNA_P-littoralis_Contig142.102.2|Name=mRNA_P-littoralis_Contig142.102.2|organism=Pylaiella littoralis U1_48|type=mRNA|length=6682bp|location=Sequence derived from alignment at P-littoralis_Contig142:321114..327795+ (Pylaiella littoralis U1_48)
ACGCAATGGCTGGTGTAACAGGGGCAACAGCGACGGCGGCGGCGGCTTCC
TCGTCATCAGCTAGAAAGCAGGGACAGGAAGATATTTTCACGGGCGGCAG
AGGCATTGGCAGCAGCAACAGCACCACCACCACCACCACCGCGGTCGGTA
CCATTGGTAGCGTGGGGAGGGTCAATGTTGATGTTGAGAGTGCCAATGAC
TCCGCTGCTCAACGAGGAGGGGCGGAAGCGAAGATGCCGCCGCTGCTGCC
GCCGCCACCGCCGCCGCCGGCAAGCTTCGGTGTCGACCATCTCGAGTGGA
TGGACTCGCTGTACATCGACGTGATCCACTCGACCACGGACCTCCAGGGC
GGGCTCCGCAAGGCGCGAGACCTGGAGCGACCCGCCTGGGAGGAGGACGA
GTACGTCGTCGACGGGGATGACGGCGGCAGCTCCGGCGGCGGCGGCGGCG
GCGGCGGCGGTGGTTACGGCGATGTCTACGGCTACGGCTCTGACGACTAC
CAACGGGGCGACGACGGTGAGACTGCGGAAACACCAGGGCGCGACGAGAA
CGAAGGCACTGACGACGTCATCGCTCGCCACAAGGACGTTATGTTCTTCC
CGTACGGGGCCGTGGTGTTCTGGGGGTGCACCGAGGCCGAGGTATCCTGC
TTCCCGTGTCTTGTCTTCGTGCGCGCTTGGCTCCTCCAGCACTGCTGGCT
GTTGTGTGTGAACGCGGGCTGTATGCATTCTTGAGACTGTGGGGTTTGTT
TTGTCAGAAAAACAACAAGAACAGCAAGACCCAATGACGACTTGGTGTAT
AGATAAAATGATGGATACTTCCGATAGGTATGCAGGAAAAAGGGCGAGGA
CCTCTCGGCCTTCTGAGTGGTTTTTACACCGCAGCAGCCACTTCGCGAGC
ACCGCAGCGGTTCATGGAACCATTCGTTGTACCAGGTAGTTTGCTGCGGC
TGGCACATACTGCTTTTACAGCGGTGGATATACAGCATGCGTGCGTGCGT
GCGAGCCGTTGTAGCGTGAGACCCGTCGTCGGCGTGCGGAGGTGACCCAC
TGTCGCGTGCTGGCTCTAAGCGCTCAGCTGATGGTGTACGATTTGCGGGA
ATGCGACCGAACTTCTGTCCTCTTGGCTGGCAATATCTAGCTCCAATTAC
GCTTCACCCCGGCAGAGGCGCTGCATGATTACGCCCGTAAAATCCCCCCC
CCCTCCCCCCCCCTCTCTTCTCCCCCACCCCCCCCCTAACCCAACCCAAC
CCAACCCTTCTTGCCCCGCCCACTTCCCTCCTCCCTCTTTTTTTTTTCTT
CATTTGGTTTGTTTGCACACGTACAACGCGCGCGTGATGTAACACGGATT
TTTATTTTCTTTTTTGGACTTGTGCAGGAGAAGGCGGTGCTTTCGAGCCT
GACCCGATTCATGGTGGGAACGGTATCGGACACCGAGCTCGCACAGTCCT
TCGATGACATGTACGTAGGTAACCAGTACGATCGTGCCAACTAAACGTGC
TGTGCCGCAGCGTGTGCACGTCGTTGTTGTGGCTTTCGTGAGGCACACGT
ATATATGATACTTGGAGCAGCAGTGCTTGATGGTGCACGACGGTGACACA
CACACAGCAATCCGCTGACTGGCCAGGTGCTGGCTGGATGCTGGGTGGCT
GTTGGGTGATGGGCGTTAGTGTTGGTAATCGGTTTTTATCCGATATGGTA
ACAGACACTTCATCCGATTTGACACCGCACACTTTATTTATTATTGTGTG
CTTGCTTCCGTTCTGTCCGTCGTCACTCCTCGTGCCATCTCCTTATCCTT
GTGTTTTCCTCCACACTTTCTCCTCCCTCGACAACGTCTGCGGTACAACC
CATGGCGATATCGACGTGTACGAACCCCCCCCTCCGTCCGCGTTTTTCCT
CTCTCCTTCGGTTTTCGTATTGGCCTCCTGTCGGTTGTCCTTTTTTTTTT
TTTGTGATATTGTTGTCATTCTGTTTTGTACGACGTGTGTGGTCTGGCAC
GCGAATTTTTTGTCGTTATTTCCTTCCCTCCTGCCATGTGCACCCATACA
CACGCACACCATGGCGACTGCTTGCGTGATGAAATTGATAAATCTGGACA
AGCACGGTTCCTGTTTGTGGTTGGTACAATTTTTCGAGTCCTCGGTGTTG
GGAGATCATTTAAGTCGTTCTGAATACACATGTTGGGGTGTTGTCGCTTT
GAAATTCGTCTGGATAACGTAATTCCATGGAGAAACTCCACTTGAGGGAG
CTATGATAGGGTGGTGGACCAGATGCACTCAATTCAACATCAGTGTGTTT
TGACCCCTCCCTGCATGTTCTCTCCTTTGTCCCCCTTCTTTCCCCCCCCC
CGTCTCTCTCAAATGCTTGAATGCTCTTCCGACCGATGCGCTTCCTCACC
GCTGGTGCGCGCAGGACGTTCGTGTACCGACATCGTGGCGGGAAACGAAG
CGTGCCCTTGAAAAACGACGAGGTATGGTGTGTACATTTGTATGATATTT
TTGCTGGTATTGGGTCGTCGAGGCGACAAATAAATGTCGCTTTTTTGCTT
TTTTCAAGCTATTTCTTTTTTTTTTAGAAAGGGGGGGGCAGCAACGGACA
TTCATTTATGGTCCTACCGACGACATATCATGCACCCATCAGATATGTAA
AATTTTTGATACTACCCCATCCCCCATCCCCCCCCCTCCTCCCCAAAAAA
AAAGCCTGCCTACACAGACGGCATTTTTCTCTCGTAGGCACGTTATATCT
TCCGTCGAGTAAATCTCCCAACATCAGTTTTGTGTTGTGTGCGTGTGTGT
GTCTGTGTGCGTGCCTGATCCCCAAGTCGTTCATCCGGCGACACACCCTA
CTAATGAACCGTTTTTTTTTCGCATCCCATGAACCAAAATCGTCGATTAT
GCAAGGCAGACCCATTGTTTTGTGTCTAATGCGCTAGTCTCCCTTCTCGG
CTTTCTGTGCGTATGATTTGTACCGGTAAGCAGGTAAGCAGGGACAGCAA
AATGTTTTTTTTTTTGTACTCTTGTGTTCCGTGTTCTGCGAAATACTTTT
TCGTATGTTTTTTTCGAGCTCCCCGTCCGTGCGTTCTGCCTCTCTTCCGC
TTTTGCCGCCGCCGCGCCCCCCTCCGCCCCCTGCCTTTTGCCTCCACATC
TAACGATATCAGGATTTATACGCGTTACCACGGCCACTCCCTCACCCATC
CAAAACGGCCGACAGAAGAAGCACACATCCAACCGAACGAATACCTTCAT
CCCGTCCACTCGATCCTTTTTTTATTTATGTCTTGTTTGTCTTGTTTGTC
TTGTTTATCTGTTTGTCTGTTTGTTTGTCTGTCTGTCTGTCTGTCTGTTG
TTTGTCTGTTTCTTTTTTTTGTCTTTTTGTCTTTTTTGTCTTTTTTATTT
GTTCGTCTTTTTGTCTTTCATGTCTGTCTGTCTGTCGGTCTGTCTATTTG
TCTGTGCGTCCTTTGTCTTGTCTGTCGGTCTGTCTATCTGCTGCTGCGGC
TTGCTGCAAAGATAACCCTGGACACGCGCGACCCCGCCGAAAAGTTGGCC
TACTCGTGCTCCCTGGCCCAGTCCGCCAAGCTGTTCGTGTTCGAGGAGAG
GCTGGACAACATCATCGACACCACGGCGAAGTACCCGCAGGTGCTCGCGG
CGACGGGCAAGATCCCCCTCACGGAAGTCGAGATCGGGTGAGTGGGTGAG
CGTGCGAGCGAGGTGGAGAAATGCTCATGTGCGAGCGTCGTGAAAGGTGT
GTACGTGCGTCTCTTGAATTCCACACACACACATTATTTTCTCCTATTCA
GCTAATCTGCGATTGATTGATTGTTGTTGCAGAAAAAGCGTGGACTGCTG
TAGCATCGTTCGCAGATTCATCGACAAATTTTCCTCTCCACATccccCCC
CCCCCCGCGCGCCCCTTACGCCCCCCTCTCGTCTTTCCACTCTTGCTCTC
CGCACATGCACAACGTTAATCTATATACTTTCGTATGTGATACGCTGCTG
CTGAAGGCGCTTGGTCGGACGAGTGCTTTGCGAACAAAACGAGGTCAACC
TACATTCCGACATCCTTGTGAGTAATTATATCCCGCTGTAACGCACCCCC
ATTGCAGAACGAGGGGATAAATGGCAACAGATAGAGCCCTCCCCACCCCC
CTTCCCTCTGATACATGGGAATAGAAACGGAGGGGTTTGTTCGTGCATCA
GCCGGAAAATCATGGGCAGAGCAAATTGGCAGCGATAAATGACCCCCCTT
CCCCCTCCCCCCCCCCACACCATTTTTCAGAGAGACCCCCCGTGGACGAG
CCATCCACGAATTGGAAACCCAGGGGACGGCGGGCACCTCACGACTCTCG
TATGTAGCTCACCTCCCTTCCTCGTTGTGCACGCCTCTTTCGGCACAGGA
CACTCCCGAGTACTTCTGGGAGGAGGATACTTGGGAGCCGGCGTACGAGG
CGCTCTGCGCGTACCTCGACATACCGTTGAGGGTGGACAACCTGAACAAG
AGGCTGGTGAGAAAATGCACAAAAAAGACACCAACACAAACACAAACAGC
AGTGTGTCGGCAGATGGAAGCGTGAAGAGTTTCAACGCGTCTTGTCTTGC
ACCTGGTACCCTGCCGTGAATCACACGGTTATGTGAAGGTTTTGGGTGTG
ATTTAGTGTAGACATGAAAGATCGCGTGTCAACATAGATGTGTGCACACG
AGATATTCCCCCTATCATATCCCCACCCCCCCTTTCCTCGCTAAAATAAC
GCCCACGTTCTCTCGTTGAGTTGTATATCGGTGTGTGCTGCAATACACGG
AGAGGATCGGACCCAAAAACCCGTCTGCATCCGGTGAAAGAGTCACATAT
GCCACAAATCGTTCTTTGACGGCTGTTCGAGTACCTCTACGTAAAGTTTT
TGCGTGCAGACTACTCTAAGACAGAGTTTGATGTCTACCTGGTTGTGTGC
GATTTGAAAATAAAGAAAACAAAAATCGAAGACTACAACTCGGGGGAACA
AGTGCAATGCTCATATCATAGCCCTCTCGTATCACACCAAAGACCCCGCG
TTCTGGAATCCGGAGAAGCGCGTAGTGAGGGTCCGGTAGGAAAGAGGAGG
GTAGCGGTTCCTTTGTTGGGGCAGAGGGTCAGCTAATTCTGTACGAAGTG
GTGTTCCCCCCGCCTAGTCCCGCTCCTTTTCTGTTCTATCGTGAGAGCTA
ATTGCGTTCGTTTTCCTTTCCACCTCTCCTCAAGAAAGCAGGAACTTCGT
ACCAACTGCTGTACTGTATGTATTTGTGAATAATATTTCTCTATCTCTCT
CTCCGTATCTCATCTCCCGGATATACCAGGTACTAACGTGAACCAACACG
GTTGTGGGAAGTTCGTTTGTGTAACGTATTTATTTATAGTACCCGGTGTA
TGTTTATTTACGAATAAAGCGACTACCCCTATCATTGGTCCCGACTTCGT
ACGTAACAATACCCCCTCCCTTGTCTCTCCGTGCCTTCTCGGTCTGGCCG
GCGTGACTCAATATTCACCCACGTCTGGCAACGACGCCCGCCGCGGTGGG
AAATACATGCCGTACATCATGTACCATGCGTAATTTGTTTTCCAAGAGCA
TACTCAGGGAACTGCTGGATGTCCTCAGCACGCAGAGCACGAACGCTCAC
GCCACCCGCCTGGAGGTGATCATCATCTACCTCATTTTTGCCGAGGTGAT
TGTCGAGGTCGTCTGGAATGTGATCATCAAGGACATCTTTCGTCTCGTCG
GTGATAGTGCCGCACCGCGTTGAACAGCCCGGACGAAGTATCGTACTTGC
CTGTATGACTACTACTGGCTTACTTGGTGTGCATTCTTTCGTACGAGATG
TCATATGATATGATACACGCCACCGATGACTGGAAAACGAGTGAAACGAC
CCCCTCCCCCATTCCCACATACATCCCCCTTTTTTTGTAAAAATTTATCA
GGTGTTGGAACAAAAAAACACCTTGCCGCGCGGAATCAAATGTCACATTG
TTTAGTTATCGTTCATGGCGGACGAGCCATGCCACGGTAGGGGTTGCACC
TAATGTTTCTGAGACTTAAAGCCTTCTAACTTTTTTAAGAATTCATGCAT
GGAAAAATGGAAAGCACCCAAAAATACATTATTCTTCACTCTAGGCATAC
CACGATTCTAATTTCCCAACAGACATGCCCTGGCCGATATATTCCAATAT
TGTCGAATCCTCCCAACTTTAGGAGCATCGAAAAAGGGCATATTTGAGAA
ACATTTTGGCGGAAAAGTGTAACCTCTATCATCGTGGCATGACTTGGACG
CAATTATATTATCTGTCACCCAACCCCAACTCCTACGCCACATGTTCATC
GAGCAGGGCCATCGTCTCGACAGCTTGGCTCGAACAAGGGGGGGGGGTTG
AGCACATCGACGGACACTTCTGCTGTACCGACAATTTCTTCAATTTTTTT
TAGAGAAATCGTGACAACGGGTCCGTCTGTACAATATCATACAAAAACAT
GTTTCGATCAGCTTTTCTCCTTCTCTTTCCAGGCACGGCCGGCAAAAAAA
GCGCTTAGTTTTCCATTAAAAGGTGGCTGGTCGTATCACAGTTGTATACT
TGTACGTTTCATCAGATTGTCGTCGTCGTCATCATCTTCTGGACTACAAA
CAAAAGTCTTTCGCCGCCCTGATGTGATCCCC
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Coding sequence (CDS) from alignment at P-littoralis_Contig142:321114..327795+

>mRNA_P-littoralis_Contig142.102.2 ID=mRNA_P-littoralis_Contig142.102.2|Name=mRNA_P-littoralis_Contig142.102.2|organism=Pylaiella littoralis U1_48|type=CDS|length=1299bp|location=Sequence derived from alignment at P-littoralis_Contig142:321114..327795+ (Pylaiella littoralis U1_48)
ATGGCTGGTGTAACAGGGGCAACAGCGACGGCGGCGGCGGCTTCCTCGTC
ATCAGCTAGAAAGCAGGGACAGGAAGATATTTTCACGGGCGGCAGAGGCA
TTGGCAGCAGCAACAGCACCACCACCACCACCACCGCGGTCGGTACCATT
GGTAGCGTGGGGAGGGTCAATGTTGATGTTGAGAGTGCCAATGACTCCGC
TGCTCAACGAGGAGGGGCGGAAGCGAAGATGCCGCCGCTGCTGCCGCCGC
CACCGCCGCCGCCGGCAAGCTTCGGTGTCGACCATCTCGAGTGGATGGAC
TCGCTGTACATCGACGTGATCCACTCGACCACGGACCTCCAGGGCGGGCT
CCGCAAGGCGCGAGACCTGGAGCGACCCGCCTGGGAGGAGGACGAGTACG
TCGTCGACGGGGATGACGGCGGCAGCTCCGGCGGCGGCGGCGGCGGCGGC
GGCGGTGGTTACGGCGATGTCTACGGCTACGGCTCTGACGACTACCAACG
GGGCGACGACGGTGAGACTGCGGAAACACCAGGGCGCGACGAGAACGAAG
GCACTGACGACGTCATCGCTCGCCACAAGGACGTTATGTTCTTCCCGTAC
GGGGCCGTGGTGTTCTGGGGGTGCACCGAGGCCGAGGAGAAGGCGGTGCT
TTCGAGCCTGACCCGATTCATGGTGGGAACGGTATCGGACACCGAGCTCG
CACAGTCCTTCGATGACATGACGTTCGTGTACCGACATCGTGGCGGGAAA
CGAAGCGTGCCCTTGAAAAACGACGAGATAACCCTGGACACGCGCGACCC
CGCCGAAAAGTTGGCCTACTCGTGCTCCCTGGCCCAGTCCGCCAAGCTGT
TCGTGTTCGAGGAGAGGCTGGACAACATCATCGACACCACGGCGAAGTAC
CCGCAGGTGCTCGCGGCGACGGGCAAGATCCCCCTCACGGAAGTCGAGAT
CGGGCGCTTGGTCGGACGAGTGCTTTGCGAACAAAACGAGGTCAACCTAC
ATTCCGACATCCTTGACACTCCCGAGTACTTCTGGGAGGAGGATACTTGG
GAGCCGGCGTACGAGGCGCTCTGCGCGTACCTCGACATACCGTTGAGGGT
GGACAACCTGAACAAGAGGCTGAGCATACTCAGGGAACTGCTGGATGTCC
TCAGCACGCAGAGCACGAACGCTCACGCCACCCGCCTGGAGGTGATCATC
ATCTACCTCATTTTTGCCGAGGTGATTGTCGAGGTCGTCTGGAATGTGAT
CATCAAGGACATCTTTCGTCTCGTCGGTGATAGTGCCGCACCGCGTTGA
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