mRNA_P-littoralis_Contig142.101.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig142.101.1
Unique NamemRNA_P-littoralis_Contig142.101.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig142.101.1 vs. uniprot
Match: A0A6H5JX01_9PHAE (DUF155 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JX01_9PHAE)

HSP 1 Score: 149 bits (377), Expect = 1.010e-37
Identity = 84/98 (85.71%), Postives = 91/98 (92.86%), Query Frame = 1 
Query:  481 GDYRSEGEQPSTERNGNRRRR-PIGEAPRQDSFRTNRMPKRGGRKRLRRNLARAAAVRRRRVKMRVSSYCVARGLKTLELLRWLESQPNRQLSQKYLA 771
            GDYRSEGEQPSTERNG+RRR+ P+GEA RQDSFRTNRMPKRGGRKRLRRNL R AA RRRR+K+RVSSYCVARGL+TLELL+WLESQPNRQLS  YLA
Sbjct:   89 GDYRSEGEQPSTERNGSRRRQHPLGEAARQDSFRTNRMPKRGGRKRLRRNLDRPAAARRRRIKIRVSSYCVARGLETLELLKWLESQPNRQLSIGYLA 186
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BLAST of mRNA_P-littoralis_Contig142.101.1 vs. uniprot
Match: D8LTX9_ECTSI (DUF155 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTX9_ECTSI)

HSP 1 Score: 96.7 bits (239), Expect = 1.160e-19
Identity = 52/61 (85.25%), Postives = 56/61 (91.80%), Query Frame = 1 
Query:  589 MPKRGGRKRLRRNLARAAAVRRRRVKMRVSSYCVARGLKTLELLRWLESQPNRQLSQKYLA 771
            MPKRGGRKRLRRNL R AA RRRR+K+RVSSYCVARGL+TLELL+WLESQPNRQLS  YLA
Sbjct:    1 MPKRGGRKRLRRNLDRPAAARRRRIKIRVSSYCVARGLETLELLKWLESQPNRQLSIGYLA 61
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig142.101.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JX01_9PHAE1.010e-3785.71DUF155 domain-containing protein n=1 Tax=Ectocarpu... [more]
D8LTX9_ECTSI1.160e-1985.25DUF155 domain-containing protein n=1 Tax=Ectocarpu... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig142contigP-littoralis_Contig142:314861..321070 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D8LTX9
Preferred nameRMD1
PFAMsDUF155
Model size843
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
GOsGO:0000322,GO:0000323,GO:0000324,GO:0000329,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005773,GO:0005774,GO:0005783,GO:0008150,GO:0008152,GO:0010467,GO:0012505,GO:0016020,GO:0031090,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044437,GO:0044444,GO:0044446,GO:0044464,GO:0071704,GO:0098588,GO:0098805,GO:0098852,GO:0140053
Exons2
Evalue1.9e-20
EggNOG OGsCOG1723@1|root,KOG2861@2759|Eukaryota
Descriptionpositive regulation of mitochondrial translation
Cds size843
COG categoryH
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789664.5502906-CDS-P-littoralis_Contig142:314860..3149851680789664.5502906-CDS-P-littoralis_Contig142:314860..314985Pylaiella littoralis U1_48CDSP-littoralis_Contig142 314861..314985 +
1680789664.5651455-CDS-P-littoralis_Contig142:320352..3210701680789664.5651455-CDS-P-littoralis_Contig142:320352..321070Pylaiella littoralis U1_48CDSP-littoralis_Contig142 320353..321070 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig142.101.1prot_P-littoralis_Contig142.101.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig142 314861..321070 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig142.101.1

>prot_P-littoralis_Contig142.101.1 ID=prot_P-littoralis_Contig142.101.1|Name=mRNA_P-littoralis_Contig142.101.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=281bp
MCRACVGQHCAGGITTAVHETRKYCEVAMINDGSRELRHQLSTPLLPEAD
KEEYDADSAMHSPRDTHRAGCARGEWSGDGSGDNSSTSGRGRDKSGGRQN
QYQQKPPRTNRGGGSGGGSVAQRLQGARLPSSPRRANARFSPSRQQDAVT
QAALSHGQGGGDYRSEGEQPSTERNGNRRRRPIGEAPRQDSFRTNRMPKR
GGRKRLRRNLARAAAVRRRRVKMRVSSYCVARGLKTLELLRWLESQPNRQ
LSQKYLASEGGAAAAGGTKTTTAAAAAAEAA
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mRNA from alignment at P-littoralis_Contig142:314861..321070+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig142.101.1 ID=mRNA_P-littoralis_Contig142.101.1|Name=mRNA_P-littoralis_Contig142.101.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=6210bp|location=Sequence derived from alignment at P-littoralis_Contig142:314861..321070+ (Pylaiella littoralis U1_48)
ATGTGCCGCGCATGCGTAGGTCAGCACTGCGCGGGAGGGATTACTACTGC
CGTACACGAGACGAGGAAATACTGCGAGGTTGCAATGATTAACGACGGAT
CGAGAGAATTACGACATCAATTGAGGTGAGTGAAACATCTCCAGTTGGAC
TCTACCGCGTCTGTATCCGATCTTGACACGTTATTTACAGCCAATATATC
AAGTATAGACGCAGAAGCAGGCAGCGTAAAGCACATGGCAGAAGCTATGG
CAGCAGCACCAGCACAGCACCGACCGTAGTATCTTACCCGAGGGTTTTTG
TAGCTGCAACGGAGGAGGTAGGCAGACTGCTGTGCGTCCAACAACAGAGT
TTATGATACAACACCGCAGCGGAAAATAAAACAGGTATGGTCCGCAACAC
AGCAAGCAGCACGCAGCACGCAGCAGTACACAACAATTCCTCTGCTATCA
CATACATACGGTACTCGAATGATTCAAGCAGTACCATCAGATCATGATCA
TCCCATGTGGTACACACATGATACATACAGTACAGCATTGAACTTGAGGA
ACCTGGTATCCTACGATACGTTTTAAATATCTTTGAAGAACATCAAATTT
GTCTTGTTTCTTCGTGCATCATACGATATGATACCTCGAAGTACCTGATT
GCAATGTGTGTGTTGCTGTCCCATCTATTCTGGACGCCAGTTCACAGCTT
TCGGTAAAAGTTGGGCGCACCAGCCGGGTGGTCACACGGGCAGGAGGAAG
GTTTTCCTCCACCTTTCTGCAAAATATGAAAATATGGCGGTGCTTGAATT
CATTTTTATGGCGAGATGGGCTCGACCGACCCTTAAGGCAATCCTGTTGG
GGACGCTGGCTGTCGTCCCCCCGGGCGGGGCTCCGTGGTCGTATTTTTGG
CTTTACATTGTCATATTTTTTGCCCACATATCAAACTTCTAGATAAAAAA
TCCTGGTCGGTGCCCCCTTCCCTGACTTCTGTACAACTCATATCCACCCT
CCCCCATCCAGCCTTAGGAGGCACAAACCTCGATAGATTTTTAGAGATCT
CACAGCAACTTGAACTCCTGTGTTGTTGTTTTTGTTGTTGTTGTTGTTGT
CTCTTCACATTAAAAACCATTCCGATCTCTCCTCGGTACCTTCCAATGTC
CGTTCTCCACCGATCAGGGACGATTTCCGTGGTCACAGGCTGCTTGCCCC
AAAAGAGGTACTCCGTATTTAGTACGCGGGAGATCCCCTCAATCCACCAA
AGAAAGGCACGACAAGGAAACTCCGGCAAAACAAAAACGGACCCCGAGAA
ATCACACAACGCTGTACAAAATAGAACAAGAAGCACATGTGTTGGTCCCT
ATAGGAATTGAAAAAAAAAAGTCTTCAAAATGGCAGGCGTTTTGCTTTCG
AGGGTAGTAAAATTGTTCAGCCCCCCCCCTGTGAAACCCGCCGGTATTCG
CGAGAGGCCTGCACAGAAGTAACCACGACCACCACCAAGTTCTGCGCCGA
GGGCAGAAACCAGCGCGAAATAAGAGGAAGTGCTGAGCGAGGGTCATTAC
CTTGGCGGTTGTGTGATTTGCGGGCGCTGAGATTGATGGTAGGGCTGGCA
TTGGTTGCGCTGCCGGTGCGGAGTTGGGAGGTCACGTCAACACCACGGCA
GTTGTACCGCGAGGCTTTAGGACCATCTCTGCGCCAAAGACCCCAGAGCA
ATACTTAACGAAACACAGCCAAACTTTGGCAGTGTTGGCTGACATAAGGA
TAGATGGAAGTGGAGGGGTGCCGAGTTAGGGATCTGTACTACGGCAGTAC
AGTAGAAATCGATGATTGCAACACAGTCCAAAATGGCCGAAATCGCCCTT
ATCCCTCCGCATCTACTCGGCTACAGAGAGAGAGGGTTGAGAGCTGTGGT
CTACTGCTGTACAAAATATCTCTTCTGCACATCGTACCATGAGTGCATAT
CATATATAATACCGGTATGATATTTGAAAAGTGTATTGGATATTGCGTCC
ATTTAAGCCTGGAACCACACCCACACGAACTTTGGCGCGAAGGCCCCAGT
GCGAAAAGATACGAACAACTCTGGTACTTTGCCACACTGTGGGAAATAGG
CTAGCTGTCCTGTTCCAGTTCTGCCGAATTAGGGATCTGTACTATTCCAG
GAGTGGTTGACACATTGCCTCGAATCCAACGCGGAGGAATGTCAGGAGTT
GTGGTTCCATGATTTTTTCTTGAGTGCATAAAAAAAACAAAATCGCAAAT
TTTCCTATGGGCACCAACACATGTGGAAGAGGGAGCCTGGTCCAGAGCCA
AGTCACAAAATGAAACAAAGCGTAAAAAGTGACAAAGTGACAAAAAAAAA
AGACGAAAGAGACCGAATTCAGTTGCCAAGGTGTCGATAAACATGGACAT
CGGGCGTGCTACTTACTCTCTTCACCAGCCCTGCAACAGTTTCAGGCAGC
GCAAGCAAGCAGACGTGAAGGGGCAAAGGGCAGAAGGGCAGAAAAACAGA
GAACAAAAAATAAAACTTCGAGGTACGTGGTAACTCAGTCCACGGTAACT
CAACAGGGGGGGGCGCACTGACGCAGTGGGGAACGGAAGAGAAGGTTTAG
TTCTATCACAGCAGGGTCAATCAATCTGGTGCACATGCCGTGCCACTCTT
TCCATCATTTCCCTCTTGCTCTCCTCTGCCGCCTGTGTGGATTAGAATTG
TGCCCAAACTTTGTAAATGCCTTGTAGCGCGAGATCGAGGTGCCCAAAAT
CAACGTTTTGAGCACCATCTTGCCGCATGGATTTTGGGGCAAAGCACCGC
AGAAACTGTGCTTCGGTTACGGACAGAGCAACCTCGTCACAAGCAACCAC
ACTGGTTCAAACTACCACAGCCTACTGATATGGTATGTGGCGTCCCATGC
CTTGACAGCAGCATGCAGCCAGACACCCTTCTAGACGTGTGAACCTTATC
TAGATGCCTGCAGCAGTCCGAAATTGCACCAAAATGCGAAATCTCGGGCG
CGTTTGCGCCATGTCACGTTCTCCGCGCGTGTCCCCCCGATCAACAAACG
AGTTGGACGCGAATTAACTGACTTACCGGGCAACCTCCTAGTCAATAAGC
TTTCGAGGTGTTCGATTGGCACAATTTGTTTTTTCGTTTTTTTCAATCTA
CGGCCCAAAAAGCTACTAAAAAGACGGTTTTTGGTAAGATTTGGACCCCC
TCCAAATAAAGCGCTGCATTCGTGCAAATCCCTGACCTTTTGTTCAAGTC
GTTTGTTTCCCTGTTGCAAAACGCCACTTCTCTACAACCCTTCTTTTATT
TTACACTGAAAACAGCATGGCCTTGGCCTTGTCGATTTTTCCCAAGGCGA
ATTTTGTTGACTCACGAAATAATCGCTTCCTGTGTGAGAGAAATCCCCAG
TTCACTGGGATTGAAAGGGTTTCGAGCCGCACCGTATGGCAGCCATTTTT
TTTTTTTTTCCGTACCCCCCCCAAGATTTAGGTCACTGCATATTCAAAGA
TAAGTTTGTCTGACGGTGCTTATTGCCGAGGACTCTAAACATGTTGAATG
TTGTGGAACTGGGGGGGGGTGGCATGGCTTGCCCGTATTGCCTTGCCAAC
CTGGCCGGTGGCAGGTGGCGGTCGTTTTTCAGGCGTGCAAAAAATATATA
TTGGACCACAGGGTTAAAGCTGGAGATGTCAACAGCATTTTTTAGGCCCA
CAGAGCAAAAAATACAGCTTTTCAGCAGACACCCGAGCACGCCGCACTCG
ATTTCTCGCTCCATCGAGGACGTATCAAGCTGAAACTTGAAAGGGTGGGA
TCTACACTCCCTACTTACCGCCAGCAGGGCGTTTGTCATTCAATCAGCAA
GGAATAGCAGCGGTCGGGGGTGTGAGCTTCGAAAAAAAAACATAATCTAT
CTTTTGTTTTGCCCCTGAAAATAGACAACTTTAACTTTCTCTACCGCCTT
GAAAATCATTTTTCGAACAGATGTTCGGTACACAGCGCTGCTCCTCCTTG
CTGATTGAATGACCCCACCGCAAAACCAACCCCCTGTCGGCGGTGAGCAG
TGTAAGGAGGTCCTATCCTTCCAGCTTTCGCCTTGATACGTGCTCGACGC
AGCGAGAAATCGAATGTGGTGTGCTCGGGTGTCTGTTGAAAAGCTGTATT
TTGTGCTCTGTGGGCCTCAAAAATGCTGGTTGACATCTCCAGCTTTAAGC
CTGTGGTCATCTTTTGTTTTTTACACACCTGAAGAACAAACGTCACCTGC
CAGCGGCCAGGTTGGCAAGGCAATGCACGTGGGATTGCTTCGAGCCCTCG
ATTAGCGCGCGCGTAACGTTCGGTATTTCTTGTGTTGTCGGTAGTTGTGT
CTCCAGAAGCTTGTGTAGTGTGTGCATGCGTACGGAGCGGCACAATCGAC
CACCCCCCCCCCCTCCACCAAGAGTTCGATGAGGTGCGGCTCGCCCTAGT
CGTGGGCCCAACTTTCCCAAAGAGCCAGCCTCTCGATTTCAATCCAAAAG
TTAAAGTTCGGAAGATTTCAAGGCAACTTTTTGCCCCCGTGAGCGATGTA
CGTTGAGAATTTTTTCTTGCATCACCCATCCCCGCATTCCCCCCCATCAA
AAGTCAAGATTAAGAAAAATATTTGGCTTCCACAATGTGTGGTCTAACGC
TGATTCTTGGAGTTCAGAAGAGATTTTGTTTTGCCCAGAACCGATGTTCA
CATCACGACGTAGAGGCCACGTTTTCAGTGAAACCTTCAAGGCTGTGTAT
GCTCCACTGCTGTCAGCTACTGCTGTATCATTTCTGTGAGCACGGGCGCA
GTGTGCGTTAAAAAAAAAAGGCAACCTTTTGTAAATTGGGGATTCCCAAG
CGAGCCAGCTGGAAATTCAAGAACAATGCGTACTGGGCGCACACCGCGCC
TTGTATGCCCACCGAACCTGGTGCCAAGTAGCTCGCAGCAATGGAACATA
TGATTCAGCCTCGAAGGTTTAATCGAAAACGGCTCGCTAAGACACCAGTA
CAGAGTCGTGGCGTGAACTGGGCTCATCTTCCAAGTTGGAGTCCGATGCG
CGTGCCTTTCTGGTTCCCCGTAAGAAAGAGACTTTGTTATCTTAATTCCC
AGAACCGGCGCTCCCATGTGATAAGATTAGGCCTTGGCTCATCGCCAACA
TCTAGCCCGTGCGTGGTCACAAAACCTGAGACAATACATGACCGAGCTGG
GAGGATAAAATAATAAACTTGGGTCATGAACAACATGTGACAAAACGAGC
GAACTGTACTCAGCCCCCCGTCTTACCAACAACAGTGGGCGCCCACACGA
GGCCTATTAACGACGACATCAAGGTGTTCGCAACTGCTGTGTATCTTACA
CCTCGGTCCCTCCAACCACTGAACGAAGCGACATATCGGTTTACTTTTCG
TATTTACACCCCCTCCCCCCGGTTACGTGCTGCTGCCCCCCCCCCCCCCC
TGCATTGTGTACACCGAACGTGATTGCCAAATAAATGAACAGTACACCTC
TTCTGCCCGAGGCGGACAAAGAGGAGTACGACGCAGATTCCGCCATGCAC
TCGCCTCGAGATACCCATCGCGCCGGTTGCGCGAGAGGAGAGTGGTCGGG
CGACGGCAGCGGCGACAACAGTAGCACATCAGGCCGAGGCAGAGACAAAA
GCGGCGGCCGACAAAACCAATATCAACAGAAACCACCACGGACAAACAGA
GGGGGCGGCAGTGGCGGCGGCAGTGTCGCACAGAGGCTGCAAGGAGCACG
GCTACCATCATCACCGCGGCGGGCAAATGCCCGGTTCAGCCCGTCGCGGC
AGCAAGACGCTGTGACGCAAGCAGCGCTCTCGCATGGGCAGGGCGGCGGA
GACTACCGTAGCGAGGGCGAGCAGCCTTCTACCGAGCGCAACGGCAATCG
CCGCCGCCGCCCGATAGGGGAGGCTCCCCGGCAGGACTCTTTCCGCACGA
ACCGGATGCCCAAGCGCGGCGGGCGCAAGCGCCTCCGACGAAACCTGGCT
CGGGCCGCCGCCGTCCGTCGCCGCAGAGTCAAGATGCGCGTGTCCTCCTA
CTGCGTCGCCCGCGGGTTGAAGACCCTCGAGCTGCTGCGGTGGCTGGAGT
CCCAGCCCAACCGCCAGCTCTCTCAGAAATATCTCGCCTCCGAGGGCGGG
GCGGCCGCCGCGGGTGGTACGAAAACAACGACGGCAGCGGCGGCGGCAGC
AGAAGCGGCG
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Coding sequence (CDS) from alignment at P-littoralis_Contig142:314861..321070+

>mRNA_P-littoralis_Contig142.101.1 ID=mRNA_P-littoralis_Contig142.101.1|Name=mRNA_P-littoralis_Contig142.101.1|organism=Pylaiella littoralis U1_48|type=CDS|length=843bp|location=Sequence derived from alignment at P-littoralis_Contig142:314861..321070+ (Pylaiella littoralis U1_48)
ATGTGCCGCGCATGCGTAGGTCAGCACTGCGCGGGAGGGATTACTACTGC
CGTACACGAGACGAGGAAATACTGCGAGGTTGCAATGATTAACGACGGAT
CGAGAGAATTACGACATCAATTGAGTACACCTCTTCTGCCCGAGGCGGAC
AAAGAGGAGTACGACGCAGATTCCGCCATGCACTCGCCTCGAGATACCCA
TCGCGCCGGTTGCGCGAGAGGAGAGTGGTCGGGCGACGGCAGCGGCGACA
ACAGTAGCACATCAGGCCGAGGCAGAGACAAAAGCGGCGGCCGACAAAAC
CAATATCAACAGAAACCACCACGGACAAACAGAGGGGGCGGCAGTGGCGG
CGGCAGTGTCGCACAGAGGCTGCAAGGAGCACGGCTACCATCATCACCGC
GGCGGGCAAATGCCCGGTTCAGCCCGTCGCGGCAGCAAGACGCTGTGACG
CAAGCAGCGCTCTCGCATGGGCAGGGCGGCGGAGACTACCGTAGCGAGGG
CGAGCAGCCTTCTACCGAGCGCAACGGCAATCGCCGCCGCCGCCCGATAG
GGGAGGCTCCCCGGCAGGACTCTTTCCGCACGAACCGGATGCCCAAGCGC
GGCGGGCGCAAGCGCCTCCGACGAAACCTGGCTCGGGCCGCCGCCGTCCG
TCGCCGCAGAGTCAAGATGCGCGTGTCCTCCTACTGCGTCGCCCGCGGGT
TGAAGACCCTCGAGCTGCTGCGGTGGCTGGAGTCCCAGCCCAACCGCCAG
CTCTCTCAGAAATATCTCGCCTCCGAGGGCGGGGCGGCCGCCGCGGGTGG
TACGAAAACAACGACGGCAGCGGCGGCGGCAGCAGAAGCGGCG
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