mRNA_P-littoralis_Contig1419.9.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1419.9.1
Unique NamemRNA_P-littoralis_Contig1419.9.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig1419.9.1 vs. uniprot
Match: A0A6H5KAM1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAM1_9PHAE)

HSP 1 Score: 68.9 bits (167), Expect = 6.530e-13
Identity = 33/53 (62.26%), Postives = 42/53 (79.25%), Query Frame = 2 
Query:  125 RFSPDTNLDVTSVSFSDDFLKAL-GKQPGWVVTSPPYKNALTCVKAALSVANK 280
            + SPDTNLD +S S++DD+L A  G+QP WVV SPPYK AL+ VKAAL+VA +
Sbjct:    9 KLSPDTNLDASSTSYADDYLAAHNGQQPDWVVASPPYKGALSFVKAALTVAKE 61
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BLAST of mRNA_P-littoralis_Contig1419.9.1 vs. uniprot
Match: A0A6H5JSV3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSV3_9PHAE)

HSP 1 Score: 65.9 bits (159), Expect = 2.400e-11
Identity = 34/51 (66.67%), Postives = 37/51 (72.55%), Query Frame = 2 
Query:  131 SPDTNLDVTSVSFSDDFLKALGKQ-PGWVVTSPPYKNALTCVKAALSVANK 280
            SPDTNLD +S SF+DDFL A  +Q P WVVT PPY  AL  VKAAL VA K
Sbjct:   52 SPDTNLDASSASFTDDFLAAHHEQQPDWVVTRPPYNGALAFVKAALPVAKK 102
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BLAST of mRNA_P-littoralis_Contig1419.9.1 vs. uniprot
Match: A0A6H5K9F3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9F3_9PHAE)

HSP 1 Score: 61.2 bits (147), Expect = 1.080e-10
Identity = 30/46 (65.22%), Postives = 34/46 (73.91%), Query Frame = 2 
Query:  125 RFSPDTNLDVTSVSFSDDFLKAL-GKQPGWVVTSPPYKNALTCVKA 259
            R  PDTNLD +S SF+DD+L A  G+QP WVVTSP YK AL  VKA
Sbjct:   10 RLPPDTNLDASSASFTDDYLTAHNGQQPDWVVTSPTYKGALAFVKA 55
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BLAST of mRNA_P-littoralis_Contig1419.9.1 vs. uniprot
Match: A0A6H5JUK3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUK3_9PHAE)

HSP 1 Score: 65.1 bits (157), Expect = 2.080e-10
Identity = 34/54 (62.96%), Postives = 40/54 (74.07%), Query Frame = 2 
Query:  122 ARFSPDTNLDVTSVSFSDDFLKAL-GKQPGWVVTSPPYKNALTCVKAALSVANK 280
            +R S  TNLD + +SF D+F KA  GKQP WVVTSPPYK A+  VKAAL+VA K
Sbjct:  177 SRLSAGTNLDASLLSFRDNFRKANPGKQPDWVVTSPPYKGAVGFVKAALAVATK 230
[Close]
BLAST of mRNA_P-littoralis_Contig1419.9.1 vs. uniprot
Match: A0A6H5KZK3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZK3_9PHAE)

HSP 1 Score: 52.8 bits (125), Expect = 1.610e-6
Identity = 25/37 (67.57%), Postives = 29/37 (78.38%), Query Frame = 2 
Query:  122 ARFSPDTNLDVTSVSFSDDFLKAL-GKQPGWVVTSPP 229
            +R SPD+NLD + +SF  DFLKA  GKQP WVVTSPP
Sbjct:  111 SRLSPDSNLDASLLSFPSDFLKAHPGKQPDWVVTSPP 147
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1419.9.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A6H5KAM1_9PHAE6.530e-1362.26Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JSV3_9PHAE2.400e-1166.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K9F3_9PHAE1.080e-1065.22Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JUK3_9PHAE2.080e-1062.96Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KZK3_9PHAE1.610e-667.57Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1419contigP-littoralis_Contig1419:10269..16038 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size285
Hectar predicted targeting categoryother localisation
Exons2
Cds size282
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789664.2202468-CDS-P-littoralis_Contig1419:10270..104261680789664.2202468-CDS-P-littoralis_Contig1419:10270..10426Pylaiella littoralis U1_48CDSP-littoralis_Contig1419 10271..10426 -
1680789664.2296185-CDS-P-littoralis_Contig1419:15912..160381680789664.2296185-CDS-P-littoralis_Contig1419:15912..16038Pylaiella littoralis U1_48CDSP-littoralis_Contig1419 15913..16038 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1419.9.1prot_P-littoralis_Contig1419.9.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1419 10271..16038 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1419.9.1

>prot_P-littoralis_Contig1419.9.1 ID=prot_P-littoralis_Contig1419.9.1|Name=mRNA_P-littoralis_Contig1419.9.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=94bp
GLQKFRPRELSIEDGPRELSSGDGPVLKLCAVRLGAVTASCQIFTGYEPG
RDLGVIFGRLSESSRKTTWLGGDEPSVQECSHMCQGRLVGGEQR
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mRNA from alignment at P-littoralis_Contig1419:10269..16038-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1419.9.1 ID=mRNA_P-littoralis_Contig1419.9.1|Name=mRNA_P-littoralis_Contig1419.9.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=5770bp|location=Sequence derived from alignment at P-littoralis_Contig1419:10269..16038- (Pylaiella littoralis U1_48)
GGTCTGCAAAAGTTCCGGCCCCGGGAGCTATCGATTGAGGACGGTCCCCG
GGAGCTCTCGAGTGGGGACGGTCCCGTGCTGAAGCTTTGCGCCGTAAGGC
TTGGAGCTGTCACGGCATCGTGCCAGGTGCGTTATTTTCTCTCAGACACA
TACGTGCCAAAATCACCAACTTCGCACTTCACAGCACCCCGCCAATGCTT
ACCGAGGCATTCATCCTCGTGAACGGGTTAAATACGACAAGGTCACACGC
ATCCATACATGGTCAACGCCTACAAACGCCCCAAATTACTTTACCTTCCT
GAACGTGTTAAATCCACTTACATATAGGGTCACAATACCATAAAAAAATG
GTGATGATTTTGGTGAACGGGTCTTCTTGTCTTCTTTGATGTTTTTTTTT
TTTCTCCGGAACAAAATCGCAGAAGTTGAAGAAAATCCGACTCCGATTTT
CCAAATCGTGGGGGATGTACACATGCACCTGGCATTCAGTGGCGCACCCC
CTCTTTTCCCCATAAAAGTCAGAGAAGTCAAAACACATGTGATGGTTTGG
CACTTTTTTTTATTTTTTATAGTGACAGAAGTCTTGAGCAGGTTGTTGTT
GATTCTCGCATTAGCTCACTACCGCCGCAGTCTAGCCCGTGGTCACAAAC
CAGGCACATATCGTGCTAGGAGGAGAAAAAAAAATTTGGACTATGATCAC
CCAGTCAAATCAGATATGGTACCGTTGGGGTACCATCTGTGGTGGCCAAA
GTGCCAAACAAAATACAGGAAAAAAATTACAGGTTCGAAAGAAAAAACAA
AAATTGGAAACAGTGCGACAAACGAAGAATAATCAAGACAAACCTCAACC
GTAACCAGATACTTCGAAGTACTTCGTACATCGAACCAGGGCCCAGCGCC
ATGACAGACCAAGGCGAAGGCAAACCAGGGCGATGGTCCAGGTAACTATG
TGATCAATAGACGAAATACAACAAAAGAAAAAAGACGATACAGGGAGGGC
ACAAAGACTGAGGGAGTGCATTCGTACACAAACACAACAAACAGGCCGCC
AAACAAAGAGGAAGCAAGGGAACGAAAAGGGAAAAGAAAAAAAAAGAGAG
GAATATAATACATGCATGGAGAGTGCAGAGGGAAGACCGGAAGTATTGGA
AGTAGGGGAGGGGGGGGGGGTTGATGAAAATAATACAAAAGGCATGCAAT
CAATCGCAAACATGTCTTGCCACGAGGTCTGCCTGTTCACGCTTGCTCTC
CTCAGTCGCACCCATGCCTCCTGCTACTGGCACCACCGTACCCAGTTGTT
TCTGACCCACATCTTTGGTAGCAGCTACACCACCACTCCGCCCTACAGGT
TTTCCACTCCGGCCACTCCGTAGCTTGGATTTGGGCTGCTTCTTCTTGTG
CTGTGCAACTCCAACCCCACTACCCCGCTGCCCTTGTGCCCCCCCGTACC
CCTCCTCTCGTTTATCCCTGCCATCGTTCTCCCTCTTTTAGCCAAGGCCT
GCCCCTCAGCCGCGTCCCCCTTCCTTTTCCGTCGACGTGTCTCTGATAAG
TCTCCCTCTTTCTTGAGCCACTCGTCCGTGAACCGCCGCGCACCCTCGTC
GATCCTGTCGTACCACTCGTCAGCTCTCTTGACACTTGCCTCCCACCCCT
CTTTTTTTGTCGACAGCGATGTCGAACGCTTCGAGGTCCTCCTGCATACG
CCTCAGCCAGTCAAACCCTTGCCCCCCCAGATACCTCGCTCCCCCCTGCA
ATGCTCCCAAAAGAGCAATTTTCGGGAGTCTCTCGTCTCTCATGCGCGCA
ACGAATCCTGCGAAGCACAGTCGCCGCTTGCGCACGGTGGCCTCAATGCT
CTCGTCACAACCCGCGGTGATAAGGGCTTTGGCATAGGAGAGGGGTCAAT
CTGTTGTCTCCCTCTTTTTCCATCCAATGAGGCGAAGGAGGAAGAAGTGG
TGGGCTGACCGAAGCTTGCGGTACTCCGCTGGCTTCAGATTCCATGTGAC
ACACCCGTAGAGTAGGGTCTCCACGACTTCAGTTTGGAGGAGTCGTACTT
ATAATCGAAGAGGGGCCCCCGGGCGGTCGTACATTGCCTGGCTGTTGCGC
CGGAAGCAGGCGTGCGCTCGCTGCACTCGGTGGTTAATCTCGCCCTCAAT
GCTACCGTCCTCACGAATCTTACCCCCGAGGTAGACAAAGTCTTTCTTCT
GCTTGAAGACCATCCCGGCAGCGTCGATCGTGAACGAGCACGCCTCCCTC
CCTTTCGCGAGCATACACATGGTCTCCGTCTTGGGTTCTGACACCAATAG
CCCAAACCGCCCGGCCACACGTACGATGATCAACATCATCTTCTCAAGGC
TCCCAGTTGATTGAGATACAATACAGACGTCGTTGGCGTAGAGCATGGTC
CAGATGGACTTCACTGCCTCCACCAGTCGAGCGTTCCTCCCCTTCCCCTT
CGTCACCTTCCTCTTGACTTTGGCCATGTCCGCCATCACCTCCGCGTCCT
TGCTGATCTCGGTAAAGGCCACCATGAGCATCGCAGCAAAGAAAAGGTTG
AACAGGTACCACTCGTTGAACACACGATCTCCGGAGCCCCTCCCGTTGCA
CCGCAGCGGTGACGAACACGCCATTGTACAGCACCGAAGTGCTGGACACT
CAGAGGTTGGAGCGATATTTAACTTGGTAGGAGCTTCAACCAAGTCCCAT
ACTACACCGGTGAGTGATAAATTGTCGTATATGTTGCCACAGTTACGAGA
AATCAAGGGTCGGTGTCCCTGTGCATGAATCCACCAGTCTTATGACCAGC
GTTGCTCCGCTTCTCGGGGGCCATCTTTACACCCGCAGTGCCCACTCGCA
TGGAGACTAATATCGCTCAGCAGTCTGTTAACTAAAGCTCTGAAAGACAT
GGGGCTCAAAAATAGTTGGTATAATTCTGAATCAGCATTAAAGTAATTCA
GACTCGTCTTCCGGTTTTCGGAAATAAGACTCGGAAATAAGCGTTTCGGA
AATAAGAACCTTCCCCAGAAATTTCCCGTGCTCTCCCGAACAGACTCATA
TTTCACGGAATTTCGCCCGACCGAATCTGATTGGTTGCGAGCCGTGACAG
TACCGCGGCGCCGGTCGGTGGTGCTGTGTGCGAGCGCAACAGGCCGTGCT
TTCCGAGCCTTCTTTGCCTTCGGCGGTCCAGGCTGCGGCAGCTGCTGCTG
CTGCTGCTGCTGCTGCGCGGTGGAGGGTGTGACATCCTCGACATCGACTT
CGCTGTCGCTGTCGTCATCGGCTTTTTCCTCGCCTGATGCAGCCTCAAGC
TCCCTCGCGTGCGCCTCACCACGCGCTCGGAAGCCCACACGTTCGGCAAG
ACGTGTGGTCTCCCGGGCTTGCTGCTCGGTCCGCGCAGCGTTCAGGGCCG
CAGTGTTGTCCAGGACCTTTTGGGTGGGGTGGCTCGGCCTCGACGATGCA
CGCCGTGGTAGTGTTGACATGGTCTCCGTGATGTATGTCGCTTAAAACTG
AAAGTGAACAGGTGTGCTCGCTTGTTTTCATATTTAGTGGGCCAGATGGC
GCGTAAAATATGAAAGTCGGGCCATCTATTTCGGAAACAACGGGACTGTG
GGGATCGGTTTTCGGTTTTGAGGACGGTTCTTAAAAATGAAAGCTTATTT
CCGAAAATTTCCTTATTTCCGAAGCTGAAAAACGAGTTTGAAAGACTCTA
TATTATGACGGCCGATATCCACACTTCAGCCAAGCGTACGAAAAAGGCGG
CGAAACCTCATATCCTGGTGCTCTCTCGTTGTCTCCGCAAATGCCTTGAG
CTGATGCTCCGCGCTGTCAACGAGCTGTACACATCATTGATAGTGCGGCT
GCTAACCGCGCCCTGACCAATGACAAACCTTTCTCTCGCCCTCTGGTCCA
GCGTTCGAAACGTCTTCGCTCGCTACCTTCGACACCACTAAAATAGACCC
ACGATCTCGCCCTCATTTTCGTATGGTGAAAACATGCAACAGGTTTCTGT
TGACATGCAGAACCCGGGTTCGGCGGATAGCGGGAACCGTTGTAGCGCAT
GCCACAGAGGAGGGCAGGCTTGTGACTTTCGGCATACGAGGCCGAGAACC
GGGAAAAAGGTTATGGCTTTCGTCGACGAGGCGGGCATCGTAGACAGGTT
CCCAGGCTTGCAGTCGAAGGACCTATCCACGAACATGCTGGCACTGTGTA
AACGCGAGGACTGTTTGTTGCCACTGTACAAGAAGAACACGAGCAGGAGG
AGAGCAAGGAGCGAGTAAGACGCAAAACGAAGCGGAAGCCACGCCACAGC
AGGGTGTGGAGCGCTACCCCGTAACCTGTGAGGCATTTGAAACGCCAGCA
TCTTGACCACTACTGTACTTCACCTAAGGCGGTGGGCGCTTTGCTGGGTG
GTGTTTCTATTACAGGGTGTGTATTAGACATGTGCGGCGGGCCTGGAGAC
CCCGTGGCGACGTGGCTTCGAGGGACGTGCGAAGTCATAACGAACGACGT
GAACTCGCGGTAAGGCTACATCTTATGTGTCGACAACAGCAATATATATT
TGGGGCCATTACGGATTTCGTTTCGAACAGGATTTTTGGAGCACTCGACC
TCATGCGTCAAAGCTGAAGAGCAGGTGGTTTAGGAAACAAATACGGCAAA
ATAAAAGTCTCTCCTGTTCCTTTGGGGCGGTTTGATGGTTGACAAAATGA
CAAATTGACTTTCATTTTGCACTGCTGTAACCAGTTAGCTCTTCTGGTCA
CCACTCTCGAACGAATAAGGCCACAGCAATGCTAAAGCCATGCCTCGTGA
GCTGTGTACATGGTCCTTCTTCTGCGGTGGTCATCTGAGGCCGCGAGGAG
TCGATAGGCTAGCGAAAAAAGTTTGCAGGCATCATCGAAGACGTGTGAAG
AAAAGAAAAATATCAACACCAGCGCCTTTGACCTGTGGTATGGAAGAATA
TTTTTTCGACTTCTATGCTGGGTTTTCTTCAAATTTGACTGCTGTACAGG
ATGAGTACCTGAAGTTCCCGCTGTCGGAGTGAAATGAGACTCTTGAAATC
GGTTTCATTAGAAGCTCCTAGTAGATGGTGGTGATTTCTTCTATTTTTCA
CACGTGGTCGATTCCTGCAATCCTTCTTTCCGAGCCTATCGATGCCTCGC
TACTTCAGATAACCACCGCAGGAGAAAGACCATGTACGCAGCTTGCGAGG
CATGGCTTTAGCATTGCTGTGGCTTCTTTCGTTCGAGAGCGATGAACGAA
ATTTAGACAACCGTGAAAGTGTTGACTCGCCCCACCAAATGTTGTAGCAC
TGTAATGCCGAAGGAGGACAAAAAAGTAGACGAGTGCTTTTATTGAGTGC
TGTATACCAGTGTCGTCCTACACTTATTTGGCAACATGTGATGAGGCGTT
TACCGCCTCCTCAGAACTCTTTGCCGCGAGGTTGTCTTTCGGTTGCAATG
ATTTGTATCCCCCCCCCCCGTTTGATACTTTGGCAGGAGGGTAAAGGATA
TTTCACCCTCCAAGGTTCCTCGACACAACCGCGCATGCAGAAATTCCGTT
CTTTTGTGACGCTGTCGTACTTGTCTGTGACTGCTCGTTTCGCTGTTTTC
CCTACATGCCAGATTTTCACCGGATACGAACCTGGACGTGACCTCGGTGT
CATTTTCGGACGACTTTCTGAAAGCTCTCGGAAAACAACCTGGCTGGGTG
GTGACGAGCCCTCCGTACAAGAATGCTCTCACATGTGTCAAGGCCGCCTT
GTCGGTGGCGAACAAAGGCG
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Coding sequence (CDS) from alignment at P-littoralis_Contig1419:10269..16038-

>mRNA_P-littoralis_Contig1419.9.1 ID=mRNA_P-littoralis_Contig1419.9.1|Name=mRNA_P-littoralis_Contig1419.9.1|organism=Pylaiella littoralis U1_48|type=CDS|length=282bp|location=Sequence derived from alignment at P-littoralis_Contig1419:10269..16038- (Pylaiella littoralis U1_48)
GGTCTGCAAAAGTTCCGGCCCCGGGAGCTATCGATTGAGGACGGTCCCCG
GGAGCTCTCGAGTGGGGACGGTCCCGTGCTGAAGCTTTGCGCCGTAAGGC
TTGGAGCTGTCACGGCATCGTGCCAGATTTTCACCGGATACGAACCTGGA
CGTGACCTCGGTGTCATTTTCGGACGACTTTCTGAAAGCTCTCGGAAAAC
AACCTGGCTGGGTGGTGACGAGCCCTCCGTACAAGAATGCTCTCACATGT
GTCAAGGCCGCCTTGTCGGTGGCGAACAAAGG
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