mRNA_P-littoralis_Contig1419.6.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1419.6.1
Unique NamemRNA_P-littoralis_Contig1419.6.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig1419.6.1 vs. uniprot
Match: A0A6H5JBA3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBA3_9PHAE)

HSP 1 Score: 149 bits (377), Expect = 5.860e-36
Identity = 117/290 (40.34%), Postives = 148/290 (51.03%), Query Frame = 3 
Query:    6 HQEEGGVVTGVGLSREELIKFVALA*IVKNRPLFTDQLPGHQVDPVVNLSPQG*GPVDAAEPWVAAIHERTSEN*YGLGILRNAAPNYDVTELCA--SDVVVG---KIFAFHRAGCRCRFGGFSRLSHCSSRLE*DGVPGESGGRGGC-LMLPRPPKVTIWPGGMEMVKRRCSSVPGKGQCTIVFCITQGYGRRSELCRCKLACCEKRTTVDDVRRDCSDTEHSVDEESDSDSDGDD-LPGVERYSGMDADLGLLEDGGIGFLDHILEYQSIEPNTFPGQREQLVLSPSE 854
            H  + G V GV L REELIKFVALA   K +  F    PGHQV+P+V+   +  G VD  + WV AIH RTSE  YG G +R AAPNYDV +LC    + +V     I     AG          +   +++    G   +    G C ++L R PKVTIWPGG+E VK RCS VPG+GQCT   C  +G    SELC+CK ACC + T    +  D    E +  E         D LPGV    G  +  G  E       D I EY+  +   +  +REQLV+SP E
Sbjct:  624 HAVKDGAVAGVALEREELIKFVALAYFKKYQASFLYP-PGHQVEPIVDPKKRN-GAVDETKAWVDAIHVRTSEAAYGQGKVREAAPNYDVLDLCVLRMEWLVEYWLSIVPVSAAGSEPSENYPIAVPEWNNK----GYLKDPEVDGCCKMLLRREPKVTIWPGGVETVKCRCSDVPGRGQCTSCVCKQKG-SICSELCKCKRACCVEETNPSAMLFDIGGGESTEGESXXXXXXXXDVLPGVGGAGGGISIGGFRE-------DDIAEYEQRDQMDWTSRREQLVVSPGE 899
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BLAST of mRNA_P-littoralis_Contig1419.6.1 vs. uniprot
Match: A0A6H5KQE5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQE5_9PHAE)

HSP 1 Score: 149 bits (377), Expect = 6.980e-36
Identity = 117/290 (40.34%), Postives = 148/290 (51.03%), Query Frame = 3 
Query:    6 HQEEGGVVTGVGLSREELIKFVALA*IVKNRPLFTDQLPGHQVDPVVNLSPQG*GPVDAAEPWVAAIHERTSEN*YGLGILRNAAPNYDVTELCA--SDVVVG---KIFAFHRAGCRCRFGGFSRLSHCSSRLE*DGVPGESGGRGGC-LMLPRPPKVTIWPGGMEMVKRRCSSVPGKGQCTIVFCITQGYGRRSELCRCKLACCEKRTTVDDVRRDCSDTEHSVDEESDSDSDGDD-LPGVERYSGMDADLGLLEDGGIGFLDHILEYQSIEPNTFPGQREQLVLSPSE 854
            H  + G V GV L REELIKFVALA   K +  F    PGHQV+P+V+   +  G VD  + WV AIH RTSE  YG G +R AAPNYDV +LC    + +V     I     AG          +   +++    G   +    G C ++L R PKVTIWPGG+E VK RCS VPG+GQCT   C  +G    SELC+CK ACC + T    +  D    E +  E         D LPGV    G  +  G  E       D I EY+  +   +  +REQLV+SP E
Sbjct: 1118 HAVKDGAVAGVALEREELIKFVALAYFKKYQASFLYP-PGHQVEPIVDPKKRN-GAVDETKAWVDAIHVRTSEAAYGQGKVREAAPNYDVLDLCVLRMEWLVEYWLSIVPVSAAGSEPSENYPIAVPEWNNK----GYLKDPEVDGCCKMLLRREPKVTIWPGGVETVKCRCSDVPGRGQCTSCVCKQKG-SICSELCKCKRACCVEETNPSAMLFDIGGGESTEGESXXXXXXXXDVLPGVGGAGGGISIGGFRE-------DDIAEYEQRDQMDWTSRREQLVVSPGE 1393
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BLAST of mRNA_P-littoralis_Contig1419.6.1 vs. uniprot
Match: A0A6H5L1Q2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1Q2_9PHAE)

HSP 1 Score: 75.9 bits (185), Expect = 2.860e-13
Identity = 39/66 (59.09%), Postives = 47/66 (71.21%), Query Frame = 3 
Query:  426 GGCLMLPRP-PKVTIWPGGMEMVKRRCSSVPGK--GQCTIVFCITQGYGRRSELCRCKLACCEKRT 614
            GGC+ML R  PKVTIWPGG E V+ +CSS   K  G+CT   CIT+G G+ SELC+CKL C E+ T
Sbjct:   45 GGCMMLMRRFPKVTIWPGGFETVRCKCSSGKRKRGGRCTSCVCITKGSGQCSELCKCKLTCREEET 110
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1419.6.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5JBA3_9PHAE5.860e-3640.34Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KQE5_9PHAE6.980e-3640.34Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L1Q2_9PHAE2.860e-1359.09Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1419contigP-littoralis_Contig1419:8540..9674 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1135
Hectar predicted targeting categoryother localisation
Exons1
Cds size447
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789664.269905-UTR-P-littoralis_Contig1419:8539..89761680789664.269905-UTR-P-littoralis_Contig1419:8539..8976Pylaiella littoralis U1_48UTRP-littoralis_Contig1419 8540..8976 +
1680789664.2870164-UTR-P-littoralis_Contig1419:9423..96741680789664.2870164-UTR-P-littoralis_Contig1419:9423..9674Pylaiella littoralis U1_48UTRP-littoralis_Contig1419 9424..9674 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789664.2786272-CDS-P-littoralis_Contig1419:8976..94231680789664.2786272-CDS-P-littoralis_Contig1419:8976..9423Pylaiella littoralis U1_48CDSP-littoralis_Contig1419 8977..9423 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1419.6.1prot_P-littoralis_Contig1419.6.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1419 8977..9423 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1419.6.1

>prot_P-littoralis_Contig1419.6.1 ID=prot_P-littoralis_Contig1419.6.1|Name=mRNA_P-littoralis_Contig1419.6.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=149bp
MLPRPPKVTIWPGGMEMVKRRCSSVPGKGQCTIVFCITQGYGRRSELCRC
KLACCEKRTTVDDVRRDCSDTEHSVDEESDSDSDGDDLPGVERYSGMDAD
LGLLEDGGIGFLDHILEYQSIEPNTFPGQREQLVLSPSEMRGIDEVSI*
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mRNA from alignment at P-littoralis_Contig1419:8540..9674+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1419.6.1 ID=mRNA_P-littoralis_Contig1419.6.1|Name=mRNA_P-littoralis_Contig1419.6.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1135bp|location=Sequence derived from alignment at P-littoralis_Contig1419:8540..9674+ (Pylaiella littoralis U1_48)
GGTTCCACCAAGAGGAGGGTGGGGTGGTCACCGGGGTTGGTTTGAGCAGA
GAGGAATTGATAAAGTTTGTCGCGCTAGCGTAAATCGTCAAAAATCGCCC
TTTGTTCACGGACCAGTTGCCAGGTCACCAGGTAGACCCTGTGGTAAATC
TTTCACCACAGGGATGAGGGCCGGTCGATGCCGCGGAGCCGTGGGTAGCC
GCAATTCACGAGCGCACGTCCGAAAATTAGTATGGGCTGGGGATTCTAAG
AAACGCGGCCCCTAACTACGATGTCACTGAGCTCTGTGCTTCGGATGTCG
TGGTTGGTAAAATATTTGCTTTCCATCGTGCCGGTTGCCGCTGCAGGTTC
GGAGGTTTCAGCCGCCTATCCCATTGCAGTTCCCGTCTGGAATAAGATGG
GGTACCTGGAGAATCCGGAGGTCGAGGGGGTTGCTTGATGTTGCCTAGGC
CCCCTAAGGTAACTATCTGGCCGGGTGGAATGGAAATGGTCAAGCGCAGG
TGTTCTTCTGTACCGGGAAAGGGTCAGTGTACAATTGTGTTTTGCATCAC
ACAGGGGTATGGTAGACGTTCAGAGTTGTGCAGATGCAAACTTGCTTGCT
GCGAGAAACGGACTACAGTCGATGACGTGCGGCGAGACTGTTCAGACACG
GAGCACTCTGTTGACGAGGAAAGTGACAGCGATTCCGATGGCGATGATTT
GCCGGGTGTGGAACGTTATTCAGGCATGGACGCCGACTTGGGTTTGCTCG
AGGACGGGGGTATTGGTTTCCTTGACCATATTTTAGAGTACCAGTCGATA
GAGCCTAACACCTTCCCTGGTCAGCGAGAACAGTTGGTTCTATCGCCTAG
CGAGATGAGGGGGATCGACGAAGTTTCAATTTGAGTTGTACTGGATGCTC
GTGTACCCATGAGCGATTTGCTTGTTTCGGATAAATCCATACCCTAAATC
GGCTACAACATAATTCTCTACACGGTGATGCCGAAGGTGCTGCAAATCAT
GTTTGGAATGGACTTTGCACTCAGCATTAGATTTGGCTTGCGTGCGAACC
CTGCGCACCATATGCATCATTTTGTACGCAACGTGCCGTACGTCCACGTG
ATTCGCCGACAACGCCGGAGGCATACACTCACCTA
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Coding sequence (CDS) from alignment at P-littoralis_Contig1419:8540..9674+

>mRNA_P-littoralis_Contig1419.6.1 ID=mRNA_P-littoralis_Contig1419.6.1|Name=mRNA_P-littoralis_Contig1419.6.1|organism=Pylaiella littoralis U1_48|type=CDS|length=447bp|location=Sequence derived from alignment at P-littoralis_Contig1419:8540..9674+ (Pylaiella littoralis U1_48)
ATGTTGCCTAGGCCCCCTAAGGTAACTATCTGGCCGGGTGGAATGGAAAT
GGTCAAGCGCAGGTGTTCTTCTGTACCGGGAAAGGGTCAGTGTACAATTG
TGTTTTGCATCACACAGGGGTATGGTAGACGTTCAGAGTTGTGCAGATGC
AAACTTGCTTGCTGCGAGAAACGGACTACAGTCGATGACGTGCGGCGAGA
CTGTTCAGACACGGAGCACTCTGTTGACGAGGAAAGTGACAGCGATTCCG
ATGGCGATGATTTGCCGGGTGTGGAACGTTATTCAGGCATGGACGCCGAC
TTGGGTTTGCTCGAGGACGGGGGTATTGGTTTCCTTGACCATATTTTAGA
GTACCAGTCGATAGAGCCTAACACCTTCCCTGGTCAGCGAGAACAGTTGG
TTCTATCGCCTAGCGAGATGAGGGGGATCGACGAAGTTTCAATTTGA
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