mRNA_P-littoralis_Contig1418.3.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1418.3.1
Unique NamemRNA_P-littoralis_Contig1418.3.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig1418.3.1 vs. uniprot
Match: A0A6H5KSI7_9PHAE (DDE Tnp4 domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSI7_9PHAE)

HSP 1 Score: 376 bits (965), Expect = 1.380e-127
Identity = 186/277 (67.15%), Postives = 215/277 (77.62%), Query Frame = 1
Query:    1 ELAVPTSDAAKVFRERFRVPHAFFLRLVELSREKKWFSDGGADAAGREGIPVELKILTALQILGRGNCFDDINQLSLMSKSMAAATFHKFCKNFAKEMFEEHIYLPTGTYQDEVMDCYRKLGFTGAIGSTDVTHVGWGMCPFTLGRSFTGKEGFPTLAFEVTVDHAGRAIGVTQGFTGATNDKTIVRYDAAVQTIRNNKVYKDREYKLRKADGTEFTRKGCYLIVDNGYHEWVTLMAPSKYPGDVDDAAFSKMLESVRKDVECFFGILKGRFRILKL 831
            +LA  T+ AAKVFRERFRVP+ FF  LV+LSR K+WFS G  DAA REGIP+ELK+L      G+GNCFDD+ QLS MS+S+A A FHKFC++ A EMF+EHIYLPTGTY DEVM  + +LG TGA GSTDVTH+G  MCPFTLGRSFTGKEGFPT+A+EVTVDHAGRA+ VT GF G TNDKT +RYD+ V  IR    Y +REYKLRK +GTE TR+GC+LIVDNGY+E              +D AFS+ LESVRKDVECFFGILKGRFRILKL
Sbjct:   84 DLADHTTAAAKVFRERFRVPYPFFQELVKLSRAKRWFSPGEKDAANREGIPLELKVL------GKGNCFDDVEQLSKMSESIAQALFHKFCRHSAAEMFDEHIYLPTGTYLDEVMGIFHQLGCTGACGSTDVTHIGRNMCPFTLGRSFTGKEGFPTIAYEVTVDHAGRALAVTNGFAGGTNDKTTIRYDSGVNKIRTESQYTEREYKLRKVNGTERTRRGCFLIVDNGYYE------------SNEDTAFSRHLESVRKDVECFFGILKGRFRILKL 342          
BLAST of mRNA_P-littoralis_Contig1418.3.1 vs. uniprot
Match: A0A6H5JAU4_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAU4_9PHAE)

HSP 1 Score: 375 bits (963), Expect = 1.110e-125
Identity = 172/274 (62.77%), Postives = 216/274 (78.83%), Query Frame = 1
Query:   13 PTSDAAKVFRERFRVPHAFFLRLVELSREKKWFSDGGADAAGREGIPVELKILTALQILGRGNCFDDINQLSLMSKSMAAATFHKFCKNFAKEMFEEHIYLPTGTYQDEVMDCYRKLGFTGAIGSTDVTHVGWGMCPFTLGRSFTGKEGFPTLAFEVTVDHAGRAIGVTQGFTGATNDKTIVRYDAAVQTIRNNKVYKDREYKLRKADGTEFTRKGCYLIVDNGYHEWVTLMAPSKYPGDVDDAAFSKMLESVRKDVECFFGILKGRFRILKLS 834
            PTS  A+ FRE FR+P+ FF+ LV L +++ WF  G  DA+GR GIPV+LK+L  LQIL RGNCF DI  +S +S   AAATFH+F + FA+EM+ EHI+LPTG YQ +VM  Y +LGF+GA GSTDVTH+ WGMCP+   RS+TGKEG+PT+A++VTVDH  R + VT GFTG+TNDK+I+RYD AV  IR + +Y ++E+ + +ADGT +  KGCYL+VDNGYH+WVTL+ PSKYP D +D AFSK LESVRKDVECFFGI+KGRFRILKLS
Sbjct:  108 PTSRPARRFRESFRLPYPFFVELVALVKQRDWFPTGKQDASGRRGIPVQLKVLACLQILARGNCFADIYHMSFISMQTAAATFHRFTRYFAREMYAEHIFLPTGDYQKKVMTQYDRLGFSGATGSTDVTHIPWGMCPYNQARSYTGKEGYPTVAYQVTVDHTKRVLAVTPGFTGSTNDKSIIRYDTAVTKIREDPIYSEKEFTVYEADGTPYQLKGCYLLVDNGYHKWVTLIPPSKYPIDQNDLAFSKRLESVRKDVECFFGIVKGRFRILKLS 381          
BLAST of mRNA_P-littoralis_Contig1418.3.1 vs. uniprot
Match: A0A6H5JPH7_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPH7_9PHAE)

HSP 1 Score: 351 bits (901), Expect = 4.190e-116
Identity = 163/273 (59.71%), Postives = 206/273 (75.46%), Query Frame = 1
Query:   16 TSDAAKVFRERFRVPHAFFLRLVELSREKKWFSDGGADAAGREGIPVELKILTALQILGRGNCFDDINQLSLMSKSMAAATFHKFCKNFAKEMFEEHIYLPTGTYQDEVMDCYRKLGFTGAIGSTDVTHVGWGMCPFTLGRSFTGKEGFPTLAFEVTVDHAGRAIGVTQGFTGATNDKTIVRYDAAVQTIRNNKVYKDREYKLRKADGTEFTRKGCYLIVDNGYHEWVTLMAPSKYPGDVDDAAFSKMLESVRKDVECFFGILKGRFRILKLS 834
            T+  A+ FR  FRVP+ FF+ LVEL R++ WF  G +D  GR+ +PVELK+L  LQIL RGN F DI  +S +S    A+TFH+FCK FA E+++E++YLPTG    +VM+ Y ++GF GA+GSTDVTH+ WGMCP+   R +TGKEG PT+AF+VTVDH+GR + VT+GFTGATNDKTI+RYD AV  IR + VY +++YKL   DG +F  KGCYL+VDNGYH+W TL+ PSK P D  D  FSK LES RKDVEC+FGILKGRFRI KL+
Sbjct:  125 TTREARRFRNNFRVPYPFFVHLVELVRDRDWFPTGESDVTGRQAVPVELKVLACLQILSRGNVFADIYHMSFISFQTVASTFHRFCKYFAAELYDEYVYLPTGEDLRKVMEQYDRIGFPGAVGSTDVTHIYWGMCPYNQARIYTGKEGKPTVAFQVTVDHSGRVLAVTRGFTGATNDKTIIRYDKAVTRIRTDPVYTEQKYKLYAQDGQQFEEKGCYLLVDNGYHKWRTLIPPSKCPIDRGDLIFSKRLESARKDVECYFGILKGRFRINKLA 397          
BLAST of mRNA_P-littoralis_Contig1418.3.1 vs. uniprot
Match: A0A6H5JBE2_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBE2_9PHAE)

HSP 1 Score: 337 bits (864), Expect = 4.480e-111
Identity = 168/280 (60.00%), Postives = 201/280 (71.79%), Query Frame = 1
Query:    1 ELAVPTSDAAKVFRERFRVPHAFFLRLVELSREKKWFSDGGADAAGREGIPVELKILTALQILGRGNCFDDINQLSLMSKSMAAATFHKFCKNFAKEMFEEHIYLPT--GTYQDEVMDCYRKLGFTGAIGSTDVTHVGWGMCPFTLGRSFTGKEGFPTLAFEVTVDHAGRAIGVTQGFTGATNDKTIVRYDAAVQTIRNNKVYKDREYKLRKADGTEFTRKGCYLIVDNGYHEWVTLMAPSKYPGDVDDAAFSKMLESVRKDVECFFGILKGRFRILKLS 834
            +L  PTS AAK FRE FRVP+ FFLRLVEL ++K WF+    DA GR   PVE K+L  L ILGRGN F  I  LS MS       FH+FC++FA EM++EHI+LP+      D VM  Y KLGF GA+GSTDVTH+GW  CP+  GRS+TGKEG PT+ ++VTV+HAGR + VT+GFTG+TNDKTI+  D AV  IR +K Y ++ + + K DGT  T KGCYLIVDNGYH+W  L+ PSKYP    D  FSK LESVRKDVECFFGILK RFRILKL+
Sbjct:   73 DLKDPTSIAAKKFREDFRVPYPFFLRLVELVKKKDWFATTQRDAYGRRCHPVEHKVLACLTILGRGNVFGSIYNLSWMSTPTVQKVFHQFCEHFATEMYDEHIFLPSEENGELDRVMGQYEKLGFPGAMGSTDVTHIGWSRCPYNQGRSYTGKEGKPTVGYQVTVNHAGRVLAVTEGFTGSTNDKTIICCDEAVDRIRTDKQYAEKPFTVHKKDGTTETLKGCYLIVDNGYHKWRMLIEPSKYPLSEADLLFSKRLESVRKDVECFFGILKMRFRILKLA 352          
BLAST of mRNA_P-littoralis_Contig1418.3.1 vs. uniprot
Match: A0A6H5JHI0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHI0_9PHAE)

HSP 1 Score: 330 bits (846), Expect = 3.050e-109
Identity = 161/280 (57.50%), Postives = 200/280 (71.43%), Query Frame = 1
Query:    1 ELAVPTSDAAKVFRERFRVPHAFFLRLVELSREKKWFSDGGADAAGREGIPVELKILTALQILGRGNCFDDINQLSLMSKSMAAATFHKFCKNFAKEMFEEHIYLPT--GTYQDEVMDCYRKLGFTGAIGSTDVTHVGWGMCPFTLGRSFTGKEGFPTLAFEVTVDHAGRAIGVTQGFTGATNDKTIVRYDAAVQTIRNNKVYKDREYKLRKADGTEFTRKGCYLIVDNGYHEWVTLMAPSKYPGDVDDAAFSKMLESVRKDVECFFGILKGRFRILKLS 834
            +L    S ++K FR  FRVP +FFLRLV L + K WF+  G DAA R+  PVE K+L  L ILGRGNCF  I Q+S MS       FHKFCK+FA+EM++EHIYLP+      D VM  Y +LGF+GA+GS DVTH+GW  CP+ L RS+TGKEG PT+ ++VTV+HAGRAI VT+GFT +TNDKT V +DA V+ IR +  Y ++ + +   DGT  T KGCYL+VDNGYH+W  LM P+KYP   +D  FSK LESVRKDVECFFGILKG FRI K++
Sbjct:   44 DLEDSNSISSKQFRLDFRVPDSFFLRLVALVKSKDWFTTSGCDAARRQSHPVEHKVLAWLTILGRGNCFASIYQVSWMSAKTVQTMFHKFCKHFAREMYDEHIYLPSEQNGELDHVMKQYDRLGFSGAMGSMDVTHIGWSKCPYNLARSYTGKEGVPTVGYQVTVNHAGRAIAVTEGFTDSTNDKTTVCWDAVVEKIRTDNQYTEKTFDVYNEDGTTTTLKGCYLLVDNGYHKWKILMEPTKYPLSENDILFSKRLESVRKDVECFFGILKGCFRIQKVA 323          
BLAST of mRNA_P-littoralis_Contig1418.3.1 vs. uniprot
Match: A0A6H5JCU6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCU6_9PHAE)

HSP 1 Score: 330 bits (845), Expect = 2.940e-108
Identity = 181/354 (51.13%), Postives = 205/354 (57.91%), Query Frame = 1
Query:    1 ELAVPTSDAAKVFRERFRVPHAFFLRLVELSREKKWFSDGGADAAGREGIPVELK--------------------------------------------------------------------------------------------------------------ILTALQILGRGNCFDDINQLSLMSKSMAAATFHKFCKNFAKEMFEEHIYLPTGTYQDEVMDCYRKLGFTGAIGSTDVTHVGWGMCPFTLGRSFTGKEGFPTLAFEVTVDHAGRAIGVTQGFTGATNDKTIVRYDAAVQTIRNNKVYKDREYKLRKADGTEFTRKGCYLIVDNGYHEWVTLMAPSKYPGD 732
            +L   T++AAKVFR RFRVPHAFFL LV+++R KKWFS    DA GR GIP+ELK                                                                                                              ILTALQILGRGNCFDDI QLSLMSK MAAATFHKFCK+FA+E+FEEHIYLPTG+YQDEVM  Y KLG TGAIGSTDVTH+GWGMCPFTLGRS+TGKEGFPT+A++VTVDHAGRAI +T GFTGATNDKTI+RYDA V TI+ +  Y  R YKLR+ADGT   RKGCY IVDNGYHE  +L  P++   D
Sbjct:   86 DLLDHTTEAAKVFRTRFRVPHAFFLELVKMARGKKWFSVREKDAVGRRGIPIELKLSSYRSGLLLLVVNCSDVPSIEPMRWIVVHNFTRWYRRVHSSTAVVAEHGSMGNVPCTVTRTSHRWHRKYCCRRPTAREKRRTLWFRLHTFQTRGHLRGHATTFDAASTKILTALQILGRGNCFDDICQLSLMSKPMAAATFHKFCKHFAQELFEEHIYLPTGSYQDEVMCMYDKLGMTGAIGSTDVTHIGWGMCPFTLGRSYTGKEGFPTIAYQVTVDHAGRAIAITSGFTGATNDKTIIRYDAGVHTIKTDAQYTKRTYKLRRADGTFRERKGCYYIVDNGYHEVNSLGHPNRMRED 439          
BLAST of mRNA_P-littoralis_Contig1418.3.1 vs. uniprot
Match: A0A6H5K796_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K796_9PHAE)

HSP 1 Score: 325 bits (834), Expect = 9.840e-108
Identity = 154/217 (70.97%), Postives = 178/217 (82.03%), Query Frame = 1
Query:  181 QILGRGNCFDDINQLSLMSKSMAAATFHKFCKNFAKEMFEEHIYLPTGTYQDEVMDCYRKLGFTGAIGSTDVTHVGWGMCPFTLGRSFTGKEGFPTLAFEVTVDHAGRAIGVTQGFTGATNDKTIVRYDAAVQTIRNNKVYKDREYKLRKADGTEFTRKGCYLIVDNGYHEWVTLMAPSKYPGDVDDAAFSKMLESVRKDVECFFGILKGRFRILKL 831
            Q+LG+GNCFDD+ QLS MSKSMA  TFHKFC++FA EMF+EHIYLPTGTY DEVM  + +LG+TGA GSTDVTH+GW MCPFTLGRSFTGKEGFPT+A++VTVDH GR + VT GFTGATNDKTI+RYD+ V  IR    Y +REYKLRKA+GT+  R+GC+LIVDNGYHEWVTL+APSKYP   +D AFS+ LESVRKDV CF        RILKL
Sbjct:   42 QVLGKGNCFDDVEQLSKMSKSMAQPTFHKFCRHFAAEMFDEHIYLPTGTYLDEVMGIFHQLGWTGACGSTDVTHIGWNMCPFTLGRSFTGKEGFPTIAYDVTVDHDGRDLAVTNGFTGATNDKTIIRYDSGVNKIRTASQYTEREYKLRKANGTKRMRRGCFLIVDNGYHEWVTLIAPSKYPQRNEDTAFSRDLESVRKDVGCF--------RILKL 250          
BLAST of mRNA_P-littoralis_Contig1418.3.1 vs. uniprot
Match: A0A6H5KNX4_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNX4_9PHAE)

HSP 1 Score: 318 bits (816), Expect = 4.750e-104
Identity = 165/308 (53.57%), Postives = 198/308 (64.29%), Query Frame = 1
Query:    1 ELAVPTSDAAKVFRERFRVPHAFFLRLVELSREKKWFSDGGADAAGREGIPVELKILTALQILGRGNCFDDINQLSLMSKSMAAATFHKFCKNFAKEMFEEHIYLPT--GTYQDEVMDCYRKLGFTGAIGSTDVTHVGWGMCPFTLGRSFTGKEGFPTLAFEVTVDHAGRAIGVTQGFTGATNDKTIVRYDAAVQTIRNNKVYK----------------------------DREYKLRKADGTEFTRKGCYLIVDNGYHEWVTLMAPSKYPGDVDDAAFSKMLESVRKDVECFFGILKGRFRILKLS 834
            +L   TS  AK  R  FRVP+  FLRLV L + K WFS    DA G    PVE K+L  L ILGRGNCF  I Q+S MS       FHKFC++FA+EM++E I+LPT      D VM  Y +LGFTGA+GS DVTH+ W  CP+   RS+TGKEGFPT+A++VTVDHAGRAI VT+GFTG+TNDKTIV +D AV+ I  +K Y                             ++ + +   DGT  T KGCYL+VDNGYH+W  L+ PSKYP   +D  FSK LESVRKDVECFFGILKGRFRILKL+
Sbjct:   31 DLEDSTSITAKQLRVDFRVPYTVFLRLVALVKSKNWFSTAVTDAVGWASHPVEHKVLAWLTILGRGNCFASIYQMSWMSAKTVQGMFHKFCRHFAREMYDEQIHLPTEESGKLDHVMKQYDRLGFTGAVGSMDVTHIAWSRCPYNQARSYTGKEGFPTIAYQVTVDHAGRAIAVTEGFTGSTNDKTIVCWDTAVEKIWTDKHYTXXXXXXXXXXXXXXXXXXXXXXXXXXXXEKTFDVYNEDGTTTTLKGCYLLVDNGYHKWQILIEPSKYPLSENDLLFSKRLESVRKDVECFFGILKGRFRILKLA 338          
BLAST of mRNA_P-littoralis_Contig1418.3.1 vs. uniprot
Match: A0A6H5KY50_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KY50_9PHAE)

HSP 1 Score: 296 bits (759), Expect = 7.230e-96
Identity = 138/228 (60.53%), Postives = 173/228 (75.88%), Query Frame = 1
Query:  151 PVELKILTALQILGRGNCFDDINQLSLMSKSMAAATFHKFCKNFAKEMFEEHIYLPTGTYQDEVMDCYRKLGFTGAIGSTDVTHVGWGMCPFTLGRSFTGKEGFPTLAFEVTVDHAGRAIGVTQGFTGATNDKTIVRYDAAVQTIRNNKVYKDREYKLRKADGTEFTRKGCYLIVDNGYHEWVTLMAPSKYPGDVDDAAFSKMLESVRKDVECFFGILKGRFRILKLS 834
            P   ++L  LQIL RGN F DI  +S +S    A+TFH+FCK FA E+++E++YLPTG    +VM+ Y ++GF GA+GSTDVTH+ WGMCP+   R +TGKEG PT+AF+VTVDH+GR + VT+GFTGATNDKTI+RYD AV  IR + VY +++YKL   DG +F  KGCYL+VDNGYH+W TL+ PSK P D  D  FSK LES RKDVEC+FGILKGRFRI KL+
Sbjct:   79 PPHTQVLACLQILSRGNVFADIYHMSFISFQTVASTFHRFCKYFAAELYDEYVYLPTGEDLRKVMEQYDRIGFPGAVGSTDVTHIYWGMCPYNQARIYTGKEGKPTVAFQVTVDHSGRVLAVTRGFTGATNDKTIIRYDKAVTRIRTDPVYTEQKYKLYAQDGQQFEEKGCYLLVDNGYHKWRTLIPPSKCPIDRGDLIFSKRLESARKDVECYFGILKGRFRINKLA 306          
BLAST of mRNA_P-littoralis_Contig1418.3.1 vs. uniprot
Match: A0A6H5KEB6_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEB6_9PHAE)

HSP 1 Score: 291 bits (745), Expect = 4.890e-91
Identity = 144/215 (66.98%), Postives = 164/215 (76.28%), Query Frame = 1
Query:  262 HKFCKNFAKEMFEEHIYLPTGTYQDEVMDCYRKLGFTGAIGSTDVTHVGWGMCPFTLGRSFTGKEGFPTLAFEVTVDHAGRAIGVTQGFTGATNDKTIVRYDAAVQTIRNNKVYKDREYKLRKADGTEFTRKGCYLIVDNG----------YHE---------------WVTLMAPSKYPGDVDDAAFSKMLESVRKDVECFFGILKGRFRILKL 831
            HKFC++FA EMF+EHIYL TGTY DEVM  + +LG TGA GST+VTH+GW MCPFTLGRSFTGKEGFPT+A EVTVDHAGRA+ VT GFTGATNDKTI+RYD+ V  IR    Y +REYKLRKA+GTE TR+GC+LIVDNG          +H+               WVTL+APSKYP   +D AFS+ LESVRKDVECFFGILKGRFRILKL
Sbjct:  246 HKFCRHFAAEMFDEHIYLLTGTYLDEVMGIFHQLGCTGACGSTNVTHIGWNMCPFTLGRSFTGKEGFPTIACEVTVDHAGRALAVTNGFTGATNDKTIIRYDSGVNKIRTESQYTEREYKLRKANGTERTRRGCFLIVDNGMSVPKDLCVVHHKNIVAKLPSSERVLIWWVTLIAPSKYPQSNEDTAFSRHLESVRKDVECFFGILKGRFRILKL 460          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1418.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KSI7_9PHAE1.380e-12767.15DDE Tnp4 domain-containing protein (Fragment) n=1 ... [more]
A0A6H5JAU4_9PHAE1.110e-12562.77Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JPH7_9PHAE4.190e-11659.71Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JBE2_9PHAE4.480e-11160.00Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JHI0_9PHAE3.050e-10957.50Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JCU6_9PHAE2.940e-10851.13Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K796_9PHAE9.840e-10870.97Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KNX4_9PHAE4.750e-10453.57DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5KY50_9PHAE7.230e-9660.53Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KEB6_9PHAE4.890e-9166.98DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1418contigP-littoralis_Contig1418:18019..20268 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7FSK2
PFAMsPlant_tran
Model size834
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons3
Evalue3.05e-75
EggNOG OGs2E2RF@1|root,2S9YA@2759|Eukaryota
DescriptionPlant transposon protein
Cds size834
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789664.1125827-CDS-P-littoralis_Contig1418:18018..181831680789664.1125827-CDS-P-littoralis_Contig1418:18018..18183Pylaiella littoralis U1_48CDSP-littoralis_Contig1418 18019..18183 +
1680789664.1251004-CDS-P-littoralis_Contig1418:19033..195611680789664.1251004-CDS-P-littoralis_Contig1418:19033..19561Pylaiella littoralis U1_48CDSP-littoralis_Contig1418 19034..19561 +
1680789664.1354666-CDS-P-littoralis_Contig1418:20127..202681680789664.1354666-CDS-P-littoralis_Contig1418:20127..20268Pylaiella littoralis U1_48CDSP-littoralis_Contig1418 20128..20268 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1418.3.1prot_P-littoralis_Contig1418.3.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1418 18019..20268 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1418.3.1

>prot_P-littoralis_Contig1418.3.1 ID=prot_P-littoralis_Contig1418.3.1|Name=mRNA_P-littoralis_Contig1418.3.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=278bp
ELAVPTSDAAKVFRERFRVPHAFFLRLVELSREKKWFSDGGADAAGREGI
PVELKILTALQILGRGNCFDDINQLSLMSKSMAAATFHKFCKNFAKEMFE
EHIYLPTGTYQDEVMDCYRKLGFTGAIGSTDVTHVGWGMCPFTLGRSFTG
KEGFPTLAFEVTVDHAGRAIGVTQGFTGATNDKTIVRYDAAVQTIRNNKV
YKDREYKLRKADGTEFTRKGCYLIVDNGYHEWVTLMAPSKYPGDVDDAAF
SKMLESVRKDVECFFGILKGRFRILKLS
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mRNA from alignment at P-littoralis_Contig1418:18019..20268+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1418.3.1 ID=mRNA_P-littoralis_Contig1418.3.1|Name=mRNA_P-littoralis_Contig1418.3.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=2250bp|location=Sequence derived from alignment at P-littoralis_Contig1418:18019..20268+ (Pylaiella littoralis U1_48)
GAACTTGCCGTGCCCACGTCCGATGCGGCGAAGGTATTCCGAGAGCGCTT TCGCGTGCCTCACGCCTTCTTCCTGAGGTTGGTGGAGCTGTCGAGGGAGA AGAAGTGGTTCTCAGACGGAGGAGCGGATGCAGCAGGCCGTGAGGGTATC CCAGTAGAGCTCAAGGTGCGCTTGAAAATGACACTTCGTACGAAGCATAA CATACTGGAAAATAATATAGATGGTATGTGTACAAGTACAAAATACAGCA GCTTTCCACTGCTGTACGTCACACAACTGCTGTCCACACACCGCCGTCCA CCTCATGACTGCAGCACAACTGCTGCACCTGATGAAAGTCTGCATGCCTT TCGGGGCCGGTATATTTGTGAAGCACTTGCAGCTGTAGGGTATGCGAGAC CAATCAAGTGCGCAACGATTTTTGTGGGTCGGCACGACGAGGACTAGCGA ATGAACTTATTCTGGATAACAAAGTGCCGCAGACGGATATCACCACAGCA GCGTGTGTTGCTGATGCTGCCGAAGATACCGCTGCAGGTTTTTGGGTACT CTTCTGTGCCCCACTCCTGGGTCGGTGGTTATTACGAGGTACTTATATTC CGAACCTTTCTTGATTGGTCGTTTCGGGTCGAGTGGGTGCGGAAACACGG GAATGCAACCATACATGACTGCTGTACTGCTGTAGACTGGCGTGCAGAAT AGATGGGATGGCAACACAACACAACAGTATTTATCACGCTTTCACGTAAA AAAAAACATGTCGTTGCTGCGCCACCACGTGACGCTATTCCGACACAACA GCTGTCACGATGTGTGTATGTGAAAGTCAAAACATCATCCGTAATACGAA ATCATGTATCTGCCTGATTCGTATACACGGACTACTTAAAATGGTAGTTG TCCAGCCGAGCGAATCGGGCAACAGCAACTACTTGACTGATGGACACTCC CGCCCCCCCCCCTTTCCTCCCCGCCGCCGCGCGCGCTCCCCCTCCCCCCT GACATTATTCGACAGATCTTGACGGCCCTCCAGATACTCGGCAGGGGCAA CTGCTTCGACGACATCAACCAGCTGTCGTTAATGAGCAAATCGATGGCGG CAGCAACGTTCCACAAGTTCTGCAAGAACTTCGCGAAGGAGATGTTCGAG GAGCATATCTACCTTCCAACAGGAACGTACCAAGACGAAGTGATGGACTG CTACCGCAAACTGGGTTTTACTGGAGCAATCGGTTCTACCGACGTCACTC ACGTCGGTTGGGGCATGTGTCCGTTCACCCTTGGCCGTTCTTTCACGGGC AAGGAGGGGTTTCCAACCCTGGCGTTCGAGGTTACCGTCGACCACGCGGG CCGCGCCATTGGCGTCACCCAAGGGTTCACCGGTGCGACCAACGACAAGA CGATCGTCCGCTACGACGCAGCCGTACAGACCATCAGGAACAACAAAGTG TACAAGGATCGAGAGTACAAGCTCAGGAAGGCGGATGGCACGGAGTTCAC CCGGAAAGGATGCTATTTGATCGTCGACAACGGCTATCACGAGGTGAGTG TATTGGGGGCGTGGGGAGTATTAGAATATCCGAACGTAGTGCGTGCTCCG TGACGCTTCGGGTTGATGTGAAGCCCGAAAAATACACGCCGGTACACCGA AAGCAGACCAATGCCATATTTGTCGGTACTGGATGAGGATCTTTATGGCA TGTCGGCCCCGTGCATCGGGCGTCGACCTTACGCAGCGGCACACCAAGGT GAAAAACGTTTTGCCGCTTCGCGTTCCTTCTATTTGTAGTTGTTTTCGTG CTGGTTCCGTTTGGACGGTTGCGTTCACTTTTTTACATTTCGAGCATACA TCACCCCATTTATAACACCAAAGGTTTTAACAAACAAATCTGCTCAGGGG TGGTCAGATGGCAAATATTGTACTTCGAAGTACAAAGTTGTAGGCATCTG TGTTGCCCACATGTCGACACGGTTCCTCGTTCCCCCGAGGAGTTTGATCG TGAAAATATGTGCGTCGGGGCCTGAGGTTTCCAGAGCCTTTCCGTAGCTC ACCAGTCGTCCCTTTCGACCCCCCTGCTACTGTTGTGCCGTCGTGTGCCA AATCAACAGTGGGTCACCCTCATGGCCCCATCGAAGTACCCGGGTGACGT GGATGACGCGGCCTTCTCCAAGATGCTTGAGAGTGTGCGCAAGGATGTGG AGTGTTTCTTCGGCATTCTGAAAGGGCGCTTCAGAATCCTGAAGCTATCG
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Coding sequence (CDS) from alignment at P-littoralis_Contig1418:18019..20268+

>mRNA_P-littoralis_Contig1418.3.1 ID=mRNA_P-littoralis_Contig1418.3.1|Name=mRNA_P-littoralis_Contig1418.3.1|organism=Pylaiella littoralis U1_48|type=CDS|length=834bp|location=Sequence derived from alignment at P-littoralis_Contig1418:18019..20268+ (Pylaiella littoralis U1_48)
GAACTTGCCGTGCCCACGTCCGATGCGGCGAAGGTATTCCGAGAGCGCTT
TCGCGTGCCTCACGCCTTCTTCCTGAGGTTGGTGGAGCTGTCGAGGGAGA
AGAAGTGGTTCTCAGACGGAGGAGCGGATGCAGCAGGCCGTGAGGGTATC
CCAGTAGAGCTCAAGATCTTGACGGCCCTCCAGATACTCGGCAGGGGCAA
CTGCTTCGACGACATCAACCAGCTGTCGTTAATGAGCAAATCGATGGCGG
CAGCAACGTTCCACAAGTTCTGCAAGAACTTCGCGAAGGAGATGTTCGAG
GAGCATATCTACCTTCCAACAGGAACGTACCAAGACGAAGTGATGGACTG
CTACCGCAAACTGGGTTTTACTGGAGCAATCGGTTCTACCGACGTCACTC
ACGTCGGTTGGGGCATGTGTCCGTTCACCCTTGGCCGTTCTTTCACGGGC
AAGGAGGGGTTTCCAACCCTGGCGTTCGAGGTTACCGTCGACCACGCGGG
CCGCGCCATTGGCGTCACCCAAGGGTTCACCGGTGCGACCAACGACAAGA
CGATCGTCCGCTACGACGCAGCCGTACAGACCATCAGGAACAACAAAGTG
TACAAGGATCGAGAGTACAAGCTCAGGAAGGCGGATGGCACGGAGTTCAC
CCGGAAAGGATGCTATTTGATCGTCGACAACGGCTATCACGAGTGGGTCA
CCCTCATGGCCCCATCGAAGTACCCGGGTGACGTGGATGACGCGGCCTTC
TCCAAGATGCTTGAGAGTGTGCGCAAGGATGTGGAGTGTTTCTTCGGCAT
TCTGAAAGGGCGCTTCAGAATCCTGAAGCTATCG
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