mRNA_P-littoralis_Contig1412.3.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1412.3.1
Unique NamemRNA_P-littoralis_Contig1412.3.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
[Close]
BLAST of mRNA_P-littoralis_Contig1412.3.1 vs. uniprot
Match: A0A6H5JHP9_9PHAE (Autophagy protein 5 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHP9_9PHAE)

HSP 1 Score: 102 bits (254), Expect = 8.930e-24
Identity = 52/68 (76.47%), Postives = 57/68 (83.82%), Query Frame = 1 
Query:    4 VRGAPLEGWRVKAREYPLLASLVRQVLRIPASQTQSERVFLSAGLVVTKARSQLDPENVELTMFLRNT 207
            VRG PLE WRVKAREYP LASL R+VL IPA Q QSERVF SAGLVVTK R+++DPENV L +FLRNT
Sbjct:  476 VRGKPLEWWRVKAREYPKLASLARRVLCIPAFQAQSERVFSSAGLVVTKTRARMDPENVGLMVFLRNT 543
[Close]
BLAST of mRNA_P-littoralis_Contig1412.3.1 vs. uniprot
Match: D8LCS5_ECTSI (Dimer_Tnp_hAT domain-containing protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCS5_ECTSI)

HSP 1 Score: 81.6 bits (200), Expect = 1.770e-16
Identity = 41/63 (65.08%), Postives = 49/63 (77.78%), Query Frame = 1 
Query:   16 PLEGWRVKAREYPLLASLVRQVLRIPASQTQSERVFLSAGLVVTKARSQLDPENVELTMFLRN 204
            PL+ WR K  EYPLLA+L R+VL IP+SQ QSERVF +AGL VT  RS+L  ENVEL ++LRN
Sbjct:  483 PLDRWRKKQLEYPLLAALARRVLAIPSSQAQSERVFSTAGLTVTPTRSRLLDENVELLVYLRN 545
[Close]
BLAST of mRNA_P-littoralis_Contig1412.3.1 vs. uniprot
Match: UPI00196298CF (zinc finger BED domain-containing protein 4-like n=2 Tax=Polypterus senegalus TaxID=55291 RepID=UPI00196298CF)

HSP 1 Score: 72.0 bits (175), Expect = 1.220e-13
Identity = 34/65 (52.31%), Postives = 47/65 (72.31%), Query Frame = 1 
Query:   16 PLEGWRVKAREYPLLASLVRQVLRIPASQTQSERVFLSAGLVVTKARSQLDPENVELTMFLRNTL 210
            PL  WR  + +YPLL+ LV++ L IPA+   SERVFL+AG +VT  RSQL PENV++ +FL+  +
Sbjct:  169 PLTWWRENSSKYPLLSPLVKEYLSIPATSVPSERVFLTAGDIVTAQRSQLLPENVDMLIFLKKNM 233
[Close]
BLAST of mRNA_P-littoralis_Contig1412.3.1 vs. uniprot
Match: UPI001963A909 (zinc finger BED domain-containing protein 4-like n=2 Tax=Polypterus senegalus TaxID=55291 RepID=UPI001963A909)

HSP 1 Score: 69.7 bits (169), Expect = 1.750e-13
Identity = 33/65 (50.77%), Postives = 46/65 (70.77%), Query Frame = 1 
Query:   16 PLEGWRVKAREYPLLASLVRQVLRIPASQTQSERVFLSAGLVVTKARSQLDPENVELTMFLRNTL 210
            PL  WR  + +YPLL+ LV++ L IPA+   SERVF +AG +VT  RSQL PENV++ +FL+  +
Sbjct:   76 PLTWWRENSSKYPLLSPLVKEYLSIPATSVPSERVFSTAGDIVTAQRSQLLPENVDMLIFLKKNM 140
[Close]
BLAST of mRNA_P-littoralis_Contig1412.3.1 vs. uniprot
Match: A0A1A8CIX7_9TELE (Dimer_Tnp_hAT domain-containing protein (Fragment) n=1 Tax=Nothobranchius kadleci TaxID=1051664 RepID=A0A1A8CIX7_9TELE)

HSP 1 Score: 65.9 bits (159), Expect = 1.520e-12
Identity = 31/63 (49.21%), Postives = 45/63 (71.43%), Query Frame = 1 
Query:   13 APLEGWRVKAREYPLLASLVRQVLRIPASQTQSERVFLSAGLVVTKARSQLDPENVELTMFLR 201
            +PLE W+V A  YP+LASL +  L IPA+   SERVF +AG +V+  RS + PE+V++ +FL+
Sbjct:   22 SPLEWWKVNAYAYPILASLAKAYLCIPATSVPSERVFSTAGDIVSAQRSLITPEHVDMLVFLK 84
[Close]
BLAST of mRNA_P-littoralis_Contig1412.3.1 vs. uniprot
Match: UPI001962CA60 (zinc finger BED domain-containing protein 4-like n=1 Tax=Polypterus senegalus TaxID=55291 RepID=UPI001962CA60)

HSP 1 Score: 69.7 bits (169), Expect = 1.810e-12
Identity = 33/65 (50.77%), Postives = 46/65 (70.77%), Query Frame = 1 
Query:   16 PLEGWRVKAREYPLLASLVRQVLRIPASQTQSERVFLSAGLVVTKARSQLDPENVELTMFLRNTL 210
            PL  WR  + +YPLL+ LV++ L IPA+   SERVF +AG +VT  RSQL PENV++ +FL+  +
Sbjct:  238 PLTWWRENSSKYPLLSPLVKEYLSIPATSVPSERVFSTAGDIVTAQRSQLLPENVDMLIFLKKNM 302
[Close]
BLAST of mRNA_P-littoralis_Contig1412.3.1 vs. uniprot
Match: UPI00196580EF (zinc finger BED domain-containing protein 4-like n=2 Tax=Polypterus senegalus TaxID=55291 RepID=UPI00196580EF)

HSP 1 Score: 69.7 bits (169), Expect = 1.880e-12
Identity = 33/65 (50.77%), Postives = 46/65 (70.77%), Query Frame = 1 
Query:   16 PLEGWRVKAREYPLLASLVRQVLRIPASQTQSERVFLSAGLVVTKARSQLDPENVELTMFLRNTL 210
            PL  WR  + +YPLL+ LV++ L IPA+   SERVF +AG +VT  RSQL PENV++ +FL+  +
Sbjct:  244 PLTWWRENSSKYPLLSPLVKEYLSIPATSVPSERVFSTAGDIVTAQRSQLLPENVDMLIFLKKNM 308
[Close]
BLAST of mRNA_P-littoralis_Contig1412.3.1 vs. uniprot
Match: UPI001964118B (zinc finger BED domain-containing protein 4-like n=1 Tax=Polypterus senegalus TaxID=55291 RepID=UPI001964118B)

HSP 1 Score: 69.7 bits (169), Expect = 2.720e-12
Identity = 33/65 (50.77%), Postives = 46/65 (70.77%), Query Frame = 1 
Query:   16 PLEGWRVKAREYPLLASLVRQVLRIPASQTQSERVFLSAGLVVTKARSQLDPENVELTMFLRNTL 210
            PL  WR  + +YPLL+ LV++ L IPA+   SERVF +AG +VT  RSQL PENV++ +FL+  +
Sbjct:  366 PLTWWRENSSKYPLLSPLVKEYLSIPATSVPSERVFSTAGDIVTAQRSQLLPENVDMLIFLKKNM 430
[Close]
BLAST of mRNA_P-littoralis_Contig1412.3.1 vs. uniprot
Match: A0A6H5JJV8_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJV8_9PHAE)

HSP 1 Score: 69.3 bits (168), Expect = 3.810e-12
Identity = 35/50 (70.00%), Postives = 41/50 (82.00%), Query Frame = 1 
Query:   61 ASLVRQVLRIPASQTQSERVFLSAGLVVTKARSQLDPENVELTMFLRNTL 210
            +S   +VL IPASQ QSERVF SAGLVVTK R+++DPENVEL +FLRN L
Sbjct:  423 SSSTSRVLCIPASQPQSERVFSSAGLVVTKTRARMDPENVELMLFLRNVL 472
[Close]
BLAST of mRNA_P-littoralis_Contig1412.3.1 vs. uniprot
Match: UPI00109FC612 (zinc finger BED domain-containing protein 4-like n=1 Tax=Erpetoichthys calabaricus TaxID=27687 RepID=UPI00109FC612)

HSP 1 Score: 65.5 bits (158), Expect = 6.320e-12
Identity = 32/69 (46.38%), Postives = 43/69 (62.32%), Query Frame = 1 
Query:    4 VRGAPLEGWRVKAREYPLLASLVRQVLRIPASQTQSERVFLSAGLVVTKARSQLDPENVELTMFLRNTL 210
            V G PL  W+    +YP LA++ R  L +P +   SERVF +AG +VT  RS L PENV++ MFL+  L
Sbjct:   63 VDGDPLTWWKSNECKYPHLATMARHHLAVPGTSVPSERVFSTAGDIVTAKRSTLSPENVDILMFLKKNL 131
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1412.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JHP9_9PHAE8.930e-2476.47Autophagy protein 5 n=1 Tax=Ectocarpus sp. CCAP 13... [more]
D8LCS5_ECTSI1.770e-1665.08Dimer_Tnp_hAT domain-containing protein n=2 Tax=Ec... [more]
UPI00196298CF1.220e-1352.31zinc finger BED domain-containing protein 4-like n... [more]
UPI001963A9091.750e-1350.77zinc finger BED domain-containing protein 4-like n... [more]
A0A1A8CIX7_9TELE1.520e-1249.21Dimer_Tnp_hAT domain-containing protein (Fragment)... [more]
UPI001962CA601.810e-1250.77zinc finger BED domain-containing protein 4-like n... [more]
UPI00196580EF1.880e-1250.77zinc finger BED domain-containing protein 4-like n... [more]
UPI001964118B2.720e-1250.77zinc finger BED domain-containing protein 4-like n... [more]
A0A6H5JJV8_9PHAE3.810e-1270.00Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
UPI00109FC6126.320e-1246.38zinc finger BED domain-containing protein 4-like n... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1412contigP-littoralis_Contig1412:17042..17251 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D8LCS5
PFAMsDUF659,Dimer_Tnp_hAT,zf-BED
Model size210
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons1
Evalue2.9e-17
EggNOG OGsKOG1121@1|root,KOG1121@2759|Eukaryota
Descriptionprotein dimerization activity
Cds size210
COG categoryE
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789663.8006215-CDS-P-littoralis_Contig1412:17041..172511680789663.8006215-CDS-P-littoralis_Contig1412:17041..17251Pylaiella littoralis U1_48CDSP-littoralis_Contig1412 17042..17251 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1412.3.1prot_P-littoralis_Contig1412.3.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1412 17042..17251 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1412.3.1

>prot_P-littoralis_Contig1412.3.1 ID=prot_P-littoralis_Contig1412.3.1|Name=mRNA_P-littoralis_Contig1412.3.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=70bp
MVRGAPLEGWRVKAREYPLLASLVRQVLRIPASQTQSERVFLSAGLVVTK
ARSQLDPENVELTMFLRNTL
back to top

mRNA from alignment at P-littoralis_Contig1412:17042..17251-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1412.3.1 ID=mRNA_P-littoralis_Contig1412.3.1|Name=mRNA_P-littoralis_Contig1412.3.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=210bp|location=Sequence derived from alignment at P-littoralis_Contig1412:17042..17251- (Pylaiella littoralis U1_48)
ATGGTTCGCGGTGCCCCACTGGAAGGGTGGCGTGTAAAGGCGCGGGAGTA
CCCCTTGCTGGCCTCATTGGTTCGCCAAGTGCTGCGCATCCCAGCATCCC
AGACGCAGTCGGAGCGCGTTTTTTTGTCGGCAGGACTAGTCGTAACAAAG
GCACGTTCTCAACTGGACCCCGAAAACGTGGAGCTCACGATGTTCCTGCG
TAATACTCTG
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig1412:17042..17251-

>mRNA_P-littoralis_Contig1412.3.1 ID=mRNA_P-littoralis_Contig1412.3.1|Name=mRNA_P-littoralis_Contig1412.3.1|organism=Pylaiella littoralis U1_48|type=CDS|length=210bp|location=Sequence derived from alignment at P-littoralis_Contig1412:17042..17251- (Pylaiella littoralis U1_48)
ATGGTTCGCGGTGCCCCACTGGAAGGGTGGCGTGTAAAGGCGCGGGAGTA
CCCCTTGCTGGCCTCATTGGTTCGCCAAGTGCTGCGCATCCCAGCATCCC
AGACGCAGTCGGAGCGCGTTTTTTTGTCGGCAGGACTAGTCGTAACAAAG
GCACGTTCTCAACTGGACCCCGAAAACGTGGAGCTCACGATGTTCCTGCG
TAATACTCTG
back to top