mRNA_P-littoralis_Contig1411.2.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1411.2.1
Unique NamemRNA_P-littoralis_Contig1411.2.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig1411.2.1 vs. uniprot
Match: D7G4Y8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4Y8_ECTSI)

HSP 1 Score: 109 bits (272), Expect = 5.390e-26
Identity = 49/105 (46.67%), Postives = 74/105 (70.48%), Query Frame = 1
Query:    1 VPDVDNPLKKLVFDRVRGIGVDILHQDTIGFKNKAKRMIRFLLNALNTDGSALVSGRLKLRSIIPPNAEPLGDVTTDGGFSALTGNQIWVLSSILPLLFRPIFAN 315
            VP   NPL ++ FDRV G G+D+LHQ  +   N  K+++ F+L+AL++ GS +V GR   R ++PPN  P+ D+T+ GG++ALTG Q+W++SSI P L  PIF++
Sbjct:  101 VPRYPNPLDEVTFDRVEGCGMDVLHQSAL---NAGKKIMTFVLDALDSAGSEIVRGRFAWRRMLPPNVSPMADITSAGGWAALTGQQLWLVSSIFPFLVAPIFSH 202          
BLAST of mRNA_P-littoralis_Contig1411.2.1 vs. uniprot
Match: D7FZI4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZI4_ECTSI)

HSP 1 Score: 109 bits (272), Expect = 1.030e-25
Identity = 49/105 (46.67%), Postives = 74/105 (70.48%), Query Frame = 1
Query:    1 VPDVDNPLKKLVFDRVRGIGVDILHQDTIGFKNKAKRMIRFLLNALNTDGSALVSGRLKLRSIIPPNAEPLGDVTTDGGFSALTGNQIWVLSSILPLLFRPIFAN 315
            VP   NPL ++ FDRV G G+D+LHQ  +   N  K+++ F+L+AL++ GS +V GR   R ++PPN  P+ D+T+ GG++ALTG Q+W++SSI P L  PIF++
Sbjct:  206 VPRYPNPLDEVTFDRVEGCGMDVLHQSAL---NAGKKIMTFVLDALDSAGSEIVRGRFAWRRMLPPNVSPMADITSAGGWAALTGQQLWLVSSIFPFLVAPIFSH 307          
BLAST of mRNA_P-littoralis_Contig1411.2.1 vs. uniprot
Match: D7FWW9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWW9_ECTSI)

HSP 1 Score: 99.8 bits (247), Expect = 3.090e-22
Identity = 46/105 (43.81%), Postives = 69/105 (65.71%), Query Frame = 1
Query:    1 VPDVDNPLKKLVFDRVRGIGVDILHQDTIGFKNKAKRMIRFLLNALNTDGSALVSGRLKLRSIIPPNAEPLGDVTTDGGFSALTGNQIWVLSSILPLLFRPIFAN 315
            VP   NP  ++ FDRV G G+DILHQ  +   N  K+++ F+++AL+  GS +V  R     ++PPN  P+ D+T+ GG+SALTG Q+W++SS  P L  PIF++
Sbjct:  112 VPRYPNPQDEVAFDRVEGCGMDILHQSAL---NSGKKIMGFVMDALDPAGSEIVRARFAWCRMLPPNVSPMADITSAGGWSALTGQQLWLVSSSFPFLLAPIFSS 213          
BLAST of mRNA_P-littoralis_Contig1411.2.1 vs. uniprot
Match: A0A6H5K975_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K975_9PHAE)

HSP 1 Score: 80.9 bits (198), Expect = 1.400e-15
Identity = 43/105 (40.95%), Postives = 63/105 (60.00%), Query Frame = 1
Query:    1 VPDVDNPLKKLVFDRVRGIGVDILHQDTIGFKNKAKRMIRFLLNALNTDGSALVSGRLKLRSIIPPNAEPLGDVTTDGGFSALTGNQIWVLSSILPLLFRPIFAN 315
            VP   NPL ++ FDRV G G+DILHQ  +   N  K+++ F+++AL+  GS +V                  D+T+ GG SALTG Q+W++SSI+P L  PIF++
Sbjct:   50 VPRYPNPLDEVAFDRVEGCGMDILHQSAL---NSGKKIMGFVMDALDPAGSEIVP-----------------DITSAGGRSALTGQQLWLVSSIVPFLLAPIFSS 134          
BLAST of mRNA_P-littoralis_Contig1411.2.1 vs. uniprot
Match: A0A6H5KPX4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPX4_9PHAE)

HSP 1 Score: 75.5 bits (184), Expect = 3.770e-14
Identity = 31/73 (42.47%), Postives = 51/73 (69.86%), Query Frame = 1
Query:   97 NKAKRMIRFLLNALNTDGSALVSGRLKLRSIIPPNAEPLGDVTTDGGFSALTGNQIWVLSSILPLLFRPIFAN 315
            N  K+++ F+++AL+  G+ +V  R   R ++PPN  P+ D+T+ GG SALTG Q+W+++SI P L  PIF++
Sbjct:  186 NSGKKIMGFVMDALDPTGTEVVRARFAWRRMLPPNVSPIADITSAGGRSALTGQQLWLVASIFPFLLAPIFSS 258          
BLAST of mRNA_P-littoralis_Contig1411.2.1 vs. uniprot
Match: D7FSA9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSA9_ECTSI)

HSP 1 Score: 73.9 bits (180), Expect = 1.940e-13
Identity = 32/73 (43.84%), Postives = 52/73 (71.23%), Query Frame = 1
Query:   97 NKAKRMIRFLLNALNTDGSALVSGRLKLRSIIPPNAEPLGDVTTDGGFSALTGNQIWVLSSILPLLFRPIFAN 315
            N  K+++ F+L+AL++  S +V GR   R ++P N  P+ D+T+ GG++ALTG Q+W++SSI P L  PIF++
Sbjct:   11 NAGKKIMTFVLDALDSAVSEIVRGRFAWRRMLPQNVLPMADITSAGGWAALTGQQLWLVSSIFPFLVAPIFSH 83          
BLAST of mRNA_P-littoralis_Contig1411.2.1 vs. uniprot
Match: A0A6H5LGI1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LGI1_9PHAE)

HSP 1 Score: 70.5 bits (171), Expect = 6.370e-12
Identity = 37/99 (37.37%), Postives = 59/99 (59.60%), Query Frame = 1
Query:   19 PLKKLVFDRVRGIGVDILHQDTIGFKNKAKRMIRFLLNALNTDGSALVSGRLKLRSIIPPNAEPLGDVTTDGGFSALTGNQIWVLSSILPLLFRPIFAN 315
            PL K++     G   +I    ++G K     M  F+++AL+  GS +V  R   R ++P N  P+ D+T+ GG+SALTG Q+W++SSI P L  P+F++
Sbjct:  579 PLMKIIRRLQNGCKAEI----SVGTKLTVTIM-GFVMDALDPAGSDIVRARFAWRRMLPRNVSPIADITSAGGWSALTGQQLWIVSSIFPFLLAPMFSS 672          
BLAST of mRNA_P-littoralis_Contig1411.2.1 vs. uniprot
Match: D8LJH2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJH2_ECTSI)

HSP 1 Score: 70.1 bits (170), Expect = 8.790e-12
Identity = 40/105 (38.10%), Postives = 61/105 (58.10%), Query Frame = 1
Query:    7 DVDNPLKKLV-FDRVRGIGVDILHQDTIGFKNKAKRMIRFLLNALN-TDGSALVSGRLKLRSIIPPNAEPLGDVTTDGGFSALTGNQIWVLSSILPLLFRPIFAN 315
            +V+NP +K V  + VR  G+D+ HQD    +N  +++ + LL  L+   G  L+S   K  S+      PL D  +DGGFSAL+G  +W LSS+  L+FRP+  +
Sbjct:  269 EVENPFRKHVHLNMVRTFGIDLFHQDA---QNSLRKIFKRLLGGLSKAKGVPLLSCLAKDPSLRVAGTPPLRDFVSDGGFSALSGMDVWTLSSVALLVFRPVLRS 370          
BLAST of mRNA_P-littoralis_Contig1411.2.1 vs. uniprot
Match: D7FWW6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWW6_ECTSI)

HSP 1 Score: 67.8 bits (164), Expect = 5.750e-11
Identity = 40/105 (38.10%), Postives = 60/105 (57.14%), Query Frame = 1
Query:    7 DVDNPLKKLV-FDRVRGIGVDILHQDTIGFKNKAKRMIRFLLNALN-TDGSALVSGRLKLRSIIPPNAEPLGDVTTDGGFSALTGNQIWVLSSILPLLFRPIFAN 315
            +V+NP +K V  + VR  G+D+ HQD    +N   ++ + LL  L+   G  L+S   K  S+      PL D  +DGGFSAL+G  +W LSS+  L+FRP+  +
Sbjct:  561 EVENPFRKHVHLNMVRTFGIDVFHQDA---QNSLLKIFKRLLGGLSKAKGVPLLSCLAKDPSLRVAGTPPLRDFVSDGGFSALSGMDVWRLSSVALLVFRPVLRS 662          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1411.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
D7G4Y8_ECTSI5.390e-2646.67Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FZI4_ECTSI1.030e-2546.67Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FWW9_ECTSI3.090e-2243.81Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K975_9PHAE1.400e-1540.95Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KPX4_9PHAE3.770e-1442.47Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FSA9_ECTSI1.940e-1343.84Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5LGI1_9PHAE6.370e-1237.37Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LJH2_ECTSI8.790e-1238.10Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FWW6_ECTSI5.750e-1138.10Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1411contigP-littoralis_Contig1411:5717..6274 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size322
Hectar predicted targeting categoryother localisation
Exons2
Cds size321
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789663.4605973-CDS-P-littoralis_Contig1411:5716..59571680789663.4605973-CDS-P-littoralis_Contig1411:5716..5957Pylaiella littoralis U1_48CDSP-littoralis_Contig1411 5717..5957 -
1680789663.4819906-CDS-P-littoralis_Contig1411:6194..62741680789663.4819906-CDS-P-littoralis_Contig1411:6194..6274Pylaiella littoralis U1_48CDSP-littoralis_Contig1411 6195..6274 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1411.2.1prot_P-littoralis_Contig1411.2.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1411 5717..6274 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1411.2.1

>prot_P-littoralis_Contig1411.2.1 ID=prot_P-littoralis_Contig1411.2.1|Name=mRNA_P-littoralis_Contig1411.2.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=107bp
VPDVDNPLKKLVFDRVRGIGVDILHQDTIGFKNKAKRMIRFLLNALNTDG
SALVSGRLKLRSIIPPNAEPLGDVTTDGGFSALTGNQIWVLSSILPLLFR
PIFANHM
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mRNA from alignment at P-littoralis_Contig1411:5717..6274-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1411.2.1 ID=mRNA_P-littoralis_Contig1411.2.1|Name=mRNA_P-littoralis_Contig1411.2.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=558bp|location=Sequence derived from alignment at P-littoralis_Contig1411:5717..6274- (Pylaiella littoralis U1_48)
GTTCCGGACGTGGATAACCCGCTGAAGAAGCTGGTGTTCGACCGAGTTCG GGGCATCGGAGTTGACATACTGCACCAAGACTCCCTTGTGAGTGAAGACG TATTTTAACACTCAATATTGCGGTGACAACTTCAACAGGCGCATGCTTTT GCTTGGTGGACTTAAAAGTACTTGATTCCGACTCTGATTCGTGGTGGTGA TGTGTGATGTGTGATGTTTGTAGTTTTCCTCGTCAGCACGGCTCGGCACC ATAAATTTTATGCGACCGGTGACTTCACTGACCATGGTCTCCTTTCCCAT TTGTTTTCCCGCCCAACCACCATTGGTTTCAAGAACAAGGCAAAGCGCAT GATACGCTTCTTGCTGAATGCACTCAACACCGACGGATCGGCGCTCGTTT CCGGGCGGTTGAAGCTGCGCTCGATAATACCACCAAACGCGGAGCCGCTG GGAGATGTCACAACAGACGGCGGTTTTTCTGCCTTGACTGGAAACCAGAT CTGGGTGTTGAGCAGCATTCTGCCTCTGCTTTTCAGGCCTATTTTCGCCA ACCACATG
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Coding sequence (CDS) from alignment at P-littoralis_Contig1411:5717..6274-

>mRNA_P-littoralis_Contig1411.2.1 ID=mRNA_P-littoralis_Contig1411.2.1|Name=mRNA_P-littoralis_Contig1411.2.1|organism=Pylaiella littoralis U1_48|type=CDS|length=321bp|location=Sequence derived from alignment at P-littoralis_Contig1411:5717..6274- (Pylaiella littoralis U1_48)
GTTCCGGACGTGGATAACCCGCTGAAGAAGCTGGTGTTCGACCGAGTTCG
GGGCATCGGAGTTGACATACTGCACCAAGACACCATTGGTTTCAAGAACA
AGGCAAAGCGCATGATACGCTTCTTGCTGAATGCACTCAACACCGACGGA
TCGGCGCTCGTTTCCGGGCGGTTGAAGCTGCGCTCGATAATACCACCAAA
CGCGGAGCCGCTGGGAGATGTCACAACAGACGGCGGTTTTTCTGCCTTGA
CTGGAAACCAGATCTGGGTGTTGAGCAGCATTCTGCCTCTGCTTTTCAGG
CCTATTTTCGCCAACCACATG
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