mRNA_P-littoralis_Contig1410.2.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1410.2.1
Unique NamemRNA_P-littoralis_Contig1410.2.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig1410.2.1 vs. uniprot
Match: A0A6H5KVC7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVC7_9PHAE)

HSP 1 Score: 116 bits (290), Expect = 4.830e-30
Identity = 55/77 (71.43%), Postives = 62/77 (80.52%), Query Frame = 1
Query:    1 MAETDRAALVALYNATGGAKWYNNRNWCTNATLSQWYGVDVDTQGRVVKLALNSNNLQGAIPKELGDLSELQMLNLW 231
            MA+ DR ALVALYNATGGAKW N RNW T A LSQWYGV+VD+QGRVV L+L  NNLQG IP ELG L+ LQ L+L+
Sbjct:   96 MAQPDREALVALYNATGGAKWENKRNWNTRAALSQWYGVEVDSQGRVVTLSLAGNNLQGTIPPELGQLTALQFLHLY 172          
BLAST of mRNA_P-littoralis_Contig1410.2.1 vs. uniprot
Match: A0A6H5K3D6_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3D6_9PHAE)

HSP 1 Score: 110 bits (274), Expect = 8.740e-30
Identity = 52/80 (65.00%), Postives = 60/80 (75.00%), Query Frame = 1
Query:   10 TDRAALVALYNATGGAKWYNNRNWCTNATLSQWYGVDVDTQGRVVKLALNSNNLQGAIPKELGDLSELQMLNLWTNKLRG 249
            TDRAALVAL+NATGGA W  N  W T+A L QWYGV+V+  GRVVKL+L  NNL+G IP++LGDL  L  LNL  NKL G
Sbjct:   11 TDRAALVALFNATGGANWKKNTKWNTDAPLGQWYGVEVNDAGRVVKLSLRYNNLKGHIPRQLGDLGALMTLNLGVNKLEG 90          
BLAST of mRNA_P-littoralis_Contig1410.2.1 vs. uniprot
Match: D8LFK2_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFK2_ECTSI)

HSP 1 Score: 114 bits (285), Expect = 6.820e-29
Identity = 53/72 (73.61%), Postives = 63/72 (87.50%), Query Frame = 1
Query:    1 MAETDRAALVALYNATGGAKWYNNRNWCTNATLSQWYGVDVDTQGRVVKLALNSNNLQGAIPKELGDLSELQ 216
            MA+TDR ALVALYNATGGA+W NN+NW T+A LSQW+GV+V+TQGRVVKL+L  NNL+G IPKELG LS L+
Sbjct:   71 MAQTDRKALVALYNATGGAEWKNNQNWTTSAALSQWHGVEVNTQGRVVKLSLGWNNLRGPIPKELGALSRLE 142          
BLAST of mRNA_P-littoralis_Contig1410.2.1 vs. uniprot
Match: D7G496_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G496_ECTSI)

HSP 1 Score: 109 bits (273), Expect = 6.840e-27
Identity = 52/76 (68.42%), Postives = 64/76 (84.21%), Query Frame = 1
Query:    1 MAETDRAALVALYNATGGAKWYNNRNWCTNATLSQWYGVDVDTQGRVVKLALNSNNLQGAIPKELGDLSELQMLNL 228
            MA+TDR ALVALYNATGG KW NN+NW T+A LSQWY V+V++QGRVVKL+L +NNLQG IP E+G L+ L+ L+L
Sbjct:  125 MAQTDRKALVALYNATGGVKWKNNQNWNTSAALSQWYRVEVNSQGRVVKLSLWNNNLQGPIPVEVGRLAVLEYLDL 200          
BLAST of mRNA_P-littoralis_Contig1410.2.1 vs. uniprot
Match: D8LFJ9_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFJ9_ECTSI)

HSP 1 Score: 105 bits (261), Expect = 3.630e-26
Identity = 51/74 (68.92%), Postives = 58/74 (78.38%), Query Frame = 1
Query:    1 MAETDRAALVALYNATGGAKWYNNRNWCTNATLSQWYGVDVDTQGRVVKLALNSNNLQGAIPKELGDLSELQML 222
            MA+TDR ALVALY A GGAKW NNRNW T+A LSQW+GV+V++QGRVV L L  NNLQG IP ELG+L  L  L
Sbjct:   25 MAQTDREALVALYTAIGGAKWRNNRNWNTSAALSQWHGVEVNSQGRVVNLFLWDNNLQGRIPTELGNLHMLDTL 98          
BLAST of mRNA_P-littoralis_Contig1410.2.1 vs. uniprot
Match: D8LBY3_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBY3_ECTSI)

HSP 1 Score: 103 bits (258), Expect = 4.420e-24
Identity = 50/83 (60.24%), Postives = 58/83 (69.88%), Query Frame = 1
Query:    1 MAETDRAALVALYNATGGAKWYNNRNWCTNATLSQWYGVDVDTQGRVVKLALNSNNLQGAIPKELGDLSELQMLNLWTNKLRG 249
            MA+TDR ALV LY ATGG  W   +NW T+A L  W+GVDV+ QGRVVKL L  NNL+G IP  LG L  LQ L+L +NKL G
Sbjct:    1 MAQTDRDALVVLYRATGGENWRERQNWDTDADLKTWHGVDVNDQGRVVKLKLRDNNLEGEIPATLGKLGNLQQLHLSSNKLSG 83          
BLAST of mRNA_P-littoralis_Contig1410.2.1 vs. uniprot
Match: D7FHA3_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHA3_ECTSI)

HSP 1 Score: 102 bits (253), Expect = 2.090e-23
Identity = 49/83 (59.04%), Postives = 60/83 (72.29%), Query Frame = 1
Query:    1 MAETDRAALVALYNATGGAKWYNNRNWCTNATLSQWYGVDVDTQGRVVKLALNSNNLQGAIPKELGDLSELQMLNLWTNKLRG 249
            MA  DRAALVAL+ + GG +W+ N+NW T A LSQWYGV V   GRVV+L L+SNNL+G IP+ LG L+EL+ L    NKL G
Sbjct:    1 MASEDRAALVALFRSAGGTRWHRNKNWDTGADLSQWYGVHVKHDGRVVELWLSSNNLEGTIPEALGVLTELKYLRFNHNKLTG 83          
BLAST of mRNA_P-littoralis_Contig1410.2.1 vs. uniprot
Match: A0A6H5JFA4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFA4_9PHAE)

HSP 1 Score: 101 bits (251), Expect = 2.180e-23
Identity = 47/73 (64.38%), Postives = 56/73 (76.71%), Query Frame = 1
Query:    1 MAETDRAALVALYNATGGAKWYNNRNWCTNATLSQWYGVDVDTQGRVVKLALNSNNLQGAIPKELGDLSELQM 219
            MA+TDR +L A YNAT GAKW  N NW + A LS WYGV+ + QGRVVKL L+SNNL+G IP ELG+LS LQ+
Sbjct:   35 MAQTDRESLTAFYNATDGAKWIRNTNWGSGAPLSDWYGVEANDQGRVVKLYLSSNNLRGPIPLELGNLSALQL 107          
BLAST of mRNA_P-littoralis_Contig1410.2.1 vs. uniprot
Match: A0A6H5JK91_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JK91_9PHAE)

HSP 1 Score: 96.3 bits (238), Expect = 2.320e-23
Identity = 45/72 (62.50%), Postives = 53/72 (73.61%), Query Frame = 1
Query:    1 MAETDRAALVALYNATGGAKWYNNRNWCTNATLSQWYGVDVDTQGRVVKLALNSNNLQGAIPKELGDLSELQ 216
            MA+TDR ALVALY ATGG  W  ++NW T+A L  W+GVDV+ QGRVVKL L  NNL+G IP  LG L+ LQ
Sbjct:    1 MAQTDRDALVALYRATGGENWRESQNWDTDADLKTWHGVDVNDQGRVVKLKLRDNNLEGEIPATLGQLANLQ 72          
BLAST of mRNA_P-littoralis_Contig1410.2.1 vs. uniprot
Match: A0A6H5KDU0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDU0_9PHAE)

HSP 1 Score: 97.1 bits (240), Expect = 2.570e-23
Identity = 45/59 (76.27%), Postives = 48/59 (81.36%), Query Frame = 1
Query:    1 MAETDRAALVALYNATGGAKWYNNRNWCTNATLSQWYGVDVDTQGRVVKLALNSNNLQG 177
            MA+ DR ALVALYNATGGAKW N RNW T A LSQWYGV+VD+QGRVV L L  NNLQG
Sbjct:  140 MAQPDRKALVALYNATGGAKWRNKRNWNTRAALSQWYGVEVDSQGRVVTLHLGGNNLQG 198          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1410.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KVC7_9PHAE4.830e-3071.43Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K3D6_9PHAE8.740e-3065.00Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
D8LFK2_ECTSI6.820e-2973.61Hypothetical leucine rich repeat protein n=1 Tax=E... [more]
D7G496_ECTSI6.840e-2768.42Hypothetical leucine rich repeat protein n=1 Tax=E... [more]
D8LFJ9_ECTSI3.630e-2668.92Hypothetical leucine rich repeat protein n=1 Tax=E... [more]
D8LBY3_ECTSI4.420e-2460.24Hypothetical leucine rich repeat protein n=1 Tax=E... [more]
D7FHA3_ECTSI2.090e-2359.04Hypothetical leucine rich repeat protein n=1 Tax=E... [more]
A0A6H5JFA4_9PHAE2.180e-2364.38Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JK91_9PHAE2.320e-2362.50Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KDU0_9PHAE2.570e-2376.27Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1410contigP-littoralis_Contig1410:1005..1989 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D8LFK2
PFAMsLRRNT_2,LRR_1,LRR_8
Model size249
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons2
Evalue1.12e-29
EggNOG OGs2E19U@1|root,2S8MQ@2759|Eukaryota
Cds size249
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789663.3216033-CDS-P-littoralis_Contig1410:1004..11791680789663.3216033-CDS-P-littoralis_Contig1410:1004..1179Pylaiella littoralis U1_48CDSP-littoralis_Contig1410 1005..1179 +
1680789663.3334172-CDS-P-littoralis_Contig1410:1915..19891680789663.3334172-CDS-P-littoralis_Contig1410:1915..1989Pylaiella littoralis U1_48CDSP-littoralis_Contig1410 1916..1989 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1410.2.1prot_P-littoralis_Contig1410.2.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1410 1005..1989 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1410.2.1

>prot_P-littoralis_Contig1410.2.1 ID=prot_P-littoralis_Contig1410.2.1|Name=mRNA_P-littoralis_Contig1410.2.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=83bp
MAETDRAALVALYNATGGAKWYNNRNWCTNATLSQWYGVDVDTQGRVVKL
ALNSNNLQGAIPKELGDLSELQMLNLWTNKLRG
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mRNA from alignment at P-littoralis_Contig1410:1005..1989+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1410.2.1 ID=mRNA_P-littoralis_Contig1410.2.1|Name=mRNA_P-littoralis_Contig1410.2.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=985bp|location=Sequence derived from alignment at P-littoralis_Contig1410:1005..1989+ (Pylaiella littoralis U1_48)
ATGGCGGAGACAGACCGTGCGGCGCTGGTTGCCCTATACAACGCGACCGG TGGGGCTAAGTGGTACAACAATCGAAACTGGTGCACTAATGCCACCCTCT CGCAATGGTATGGAGTCGACGTCGACACCCAGGGCCGCGTGGTGAAGCTA GCTCTGAATTCCAACAACCTCCAAGGTATTCTTGTCCAACACCTCTCTTG CGATGTGGTTGACCTTCCTTAAGAACTCTTTGACCGACAGTAGTGGCCCT TTCATAAAGTTGCAAGTCTTGCAACAGGCCACAACATTGTCTGTTTCGTA CGTTCCCGCGTTCTGCACACGTTCTACGCCTGAGTACCCCTTGTATGTAA ATTCCCCGCAGTACCAGCAGGCTGTGCGTACAAAGCTGCTGTACTCATCG AAGCTAATCGACACCGCAGTGTTTCGCCTCCTAGCTTGCTCCTTGAACAC GCGCCACCTGTACAGCACATCACTTTTTCTGGCTTTCAAGTGCCTCTGGT ACGCGGGGGACTTTCGCTATCTCTTCTTTTGCAGAGCTCTGATGCGGCGC ATGCTGTACTCTGGAGCATTCTCGACGACAAACCCGTCCCGCACGGGCCC AGTAGGCTTGGTGGTTGGTTTCCTTGCTGGCATCCACCCGTTATCGTTTG TTGCAGCCATGCCTGGGAAAACGTGGCAAATGCCGTGTGCTGTAAAAGCA GCCGTGCGCTACCTTACGGGAGGAAATATTCTAGACGTCGGCAGTTTCGG CGGGGAAAAAAACAAAAATTACCCGGCCGGCTTCTAGAACACGTACTAGC CTCCGCATCGGAAAGTAGGTGTTCTAGAAGCCGGGGGCGTAGACATAACT GTATTCTAAAAGTCTCAAGCATGACCATTCGGTTGCTCATTTCGTTCATT TGTATATGCAGGCGCCATCCCCAAGGAGCTAGGGGATCTCAGCGAGCTTC AAATGCTTAATCTGTGGACCAACAAGCTGAGAGGT
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Coding sequence (CDS) from alignment at P-littoralis_Contig1410:1005..1989+

>mRNA_P-littoralis_Contig1410.2.1 ID=mRNA_P-littoralis_Contig1410.2.1|Name=mRNA_P-littoralis_Contig1410.2.1|organism=Pylaiella littoralis U1_48|type=CDS|length=249bp|location=Sequence derived from alignment at P-littoralis_Contig1410:1005..1989+ (Pylaiella littoralis U1_48)
ATGGCGGAGACAGACCGTGCGGCGCTGGTTGCCCTATACAACGCGACCGG
TGGGGCTAAGTGGTACAACAATCGAAACTGGTGCACTAATGCCACCCTCT
CGCAATGGTATGGAGTCGACGTCGACACCCAGGGCCGCGTGGTGAAGCTA
GCTCTGAATTCCAACAACCTCCAAGGCGCCATCCCCAAGGAGCTAGGGGA
TCTCAGCGAGCTTCAAATGCTTAATCTGTGGACCAACAAGCTGAGAGGT
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