mRNA_P-littoralis_Contig141.66.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig141.66.1
Unique NamemRNA_P-littoralis_Contig141.66.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig141.66.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig141contigP-littoralis_Contig141:406926..407832 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size821
Hectar predicted targeting categoryother localisation
Exons2
Cds size468
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789660.1376894-UTR-P-littoralis_Contig141:406925..4069871680789660.1376894-UTR-P-littoralis_Contig141:406925..406987Pylaiella littoralis U1_48UTRP-littoralis_Contig141 406926..406987 -
1680789660.1747632-UTR-P-littoralis_Contig141:407541..4078321680789660.1747632-UTR-P-littoralis_Contig141:407541..407832Pylaiella littoralis U1_48UTRP-littoralis_Contig141 407542..407832 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789660.1490707-CDS-P-littoralis_Contig141:406987..4073231680789660.1490707-CDS-P-littoralis_Contig141:406987..407323Pylaiella littoralis U1_48CDSP-littoralis_Contig141 406988..407323 -
1680789660.1603553-CDS-P-littoralis_Contig141:407409..4075411680789660.1603553-CDS-P-littoralis_Contig141:407409..407541Pylaiella littoralis U1_48CDSP-littoralis_Contig141 407410..407541 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig141.66.1prot_P-littoralis_Contig141.66.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig141 406988..407541 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig141.66.1

>prot_P-littoralis_Contig141.66.1 ID=prot_P-littoralis_Contig141.66.1|Name=mRNA_P-littoralis_Contig141.66.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=156bp
MYITSISARRQATPQVKRRYDLGCTERLCRPVTSFAAKDGGRRAFFRKLI
GNEQQERAVVRESGGDGGDATPAVKKSYESMVLVMWAWATPTATWTQTRR
TCLGRHHHCRRKDGMETPSSSTSDDTCVYFSSSVFSDYRGYLFVAGSTPD
SNYLL*
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mRNA from alignment at P-littoralis_Contig141:406926..407832-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig141.66.1 ID=mRNA_P-littoralis_Contig141.66.1|Name=mRNA_P-littoralis_Contig141.66.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=907bp|location=Sequence derived from alignment at P-littoralis_Contig141:406926..407832- (Pylaiella littoralis U1_48)
CCCATACAGCACCCAACAGCCAGCAATCATCAGCATCCTTGCCCGGCTGC
GCTTGAGGTTCGGTTCCTCGGCAGACCACTTTATCTGTCGCTGTAAGCAT
GACCCGAAGCGAGTTGGGGGGGTCTTTCTGGCGGGTGTAAGGCCGCACTT
ACCCTCAAGGAGTGATACCTTCTTGCTGCTGCGCTGTGGTGGAACGCCAC
GGGCGTGGCGGTAGAGTTGGGTCGTAGTTGGTGTGCCAGGTGCAAACGTG
CGGATTCGCGGGCCCTTTGGTTACAGCGGCATTACAGCAAAATGTACATC
ACAAGCATAAGTGCGCGGAGGCAGGCGACACCACAGGTGAAAAGACGGTA
CGATCTAGGATGCACAGAGAGATTGTGCCGCCCAGTAACCAGTTTCGCAG
CCAAAGACGGAGGTAGACGAGCAGCGACGAACGGGGAAGAGTTTGGTCGA
CCTCACTCCGAGCGTGAACTTTTTTTTCAGAAGACTTGTACCTAAAGTGC
ACAGCGGAGTTTTTTAGGAAACTGATTGGAAATGAGCAACAAGAGAGAGC
TGTAGTGCGAGAGAGCGGCGGTGATGGAGGTGACGCAACGCCGGCAGTGA
AGAAGAGTTACGAGAGCATGGTGCTGGTGATGTGGGCTTGGGCAACGCCA
ACAGCAACGTGGACCCAGACAAGAAGGACATGCTTAGGGCGCCATCATCA
CTGTCGTCGCAAGGACGGCATGGAGACACCATCCTCGTCAACATCTGATG
ATACGTGTGTGTATTTTTCTTCTTCTGTCTTCTCCGATTACCGGGGCTAC
TTGTTCGTTGCAGGCAGCACTCCAGACAGCAACTACTTGCTGTAGTCATC
AGCTACCTACTGACTGCTTGTAGCAGCAGTGGTTATTCGTTATAAGTGGG
GCGGGAG
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Coding sequence (CDS) from alignment at P-littoralis_Contig141:406926..407832-

>mRNA_P-littoralis_Contig141.66.1 ID=mRNA_P-littoralis_Contig141.66.1|Name=mRNA_P-littoralis_Contig141.66.1|organism=Pylaiella littoralis U1_48|type=CDS|length=468bp|location=Sequence derived from alignment at P-littoralis_Contig141:406926..407832- (Pylaiella littoralis U1_48)
ATGTACATCACAAGCATAAGTGCGCGGAGGCAGGCGACACCACAGGTGAA
AAGACGGTACGATCTAGGATGCACAGAGAGATTGTGCCGCCCAGTAACCA
GTTTCGCAGCCAAAGACGGAGGTAGACGAGCATTTTTTAGGAAACTGATT
GGAAATGAGCAACAAGAGAGAGCTGTAGTGCGAGAGAGCGGCGGTGATGG
AGGTGACGCAACGCCGGCAGTGAAGAAGAGTTACGAGAGCATGGTGCTGG
TGATGTGGGCTTGGGCAACGCCAACAGCAACGTGGACCCAGACAAGAAGG
ACATGCTTAGGGCGCCATCATCACTGTCGTCGCAAGGACGGCATGGAGAC
ACCATCCTCGTCAACATCTGATGATACGTGTGTGTATTTTTCTTCTTCTG
TCTTCTCCGATTACCGGGGCTACTTGTTCGTTGCAGGCAGCACTCCAGAC
AGCAACTACTTGCTGTAG
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