mRNA_P-littoralis_Contig141.62.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig141.62.1
Unique NamemRNA_P-littoralis_Contig141.62.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig141.62.1 vs. uniprot
Match: D7FIM0_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FIM0_ECTSI)

HSP 1 Score: 116 bits (290), Expect = 6.380e-28
Identity = 60/74 (81.08%), Postives = 60/74 (81.08%), Query Frame = 2 
Query:  116 RPWSSARRLKNRSKTSSEQPESMPFGR*GRAPC--FHVPYHHRKAPFADMRLVPCGMCGRKWVAETVLSTVEAP 331
            RPW SARR KNR K   EQPES P  R  R PC  FHVPYHHRKAPFADMRLVPCGMCGRKWVAETVLSTVEAP
Sbjct:   63 RPWHSARRTKNRGKIPPEQPESPPPFRTVR-PCSYFHVPYHHRKAPFADMRLVPCGMCGRKWVAETVLSTVEAP 135
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BLAST of mRNA_P-littoralis_Contig141.62.1 vs. uniprot
Match: A0A7S2PHZ0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2PHZ0_9STRA)

HSP 1 Score: 66.2 bits (160), Expect = 1.080e-11
Identity = 27/38 (71.05%), Postives = 31/38 (81.58%), Query Frame = 2 
Query:  218 HVPYHHRKAPFADMRLVPCGMCGRKWVAETVLSTVEAP 331
            HVPYHHR APF +M+LVPC +CGRKWV E +LST E P
Sbjct:   55 HVPYHHRLAPFNNMKLVPCLLCGRKWVPEVLLSTTEPP 92
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BLAST of mRNA_P-littoralis_Contig141.62.1 vs. uniprot
Match: K0T113_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0T113_THAOC)

HSP 1 Score: 69.7 bits (169), Expect = 1.370e-11
Identity = 27/38 (71.05%), Postives = 33/38 (86.84%), Query Frame = 2 
Query:  218 HVPYHHRKAPFADMRLVPCGMCGRKWVAETVLSTVEAP 331
            HVPYHHR+APF +M+LVPC MCG+KWV ET+L+T E P
Sbjct:  377 HVPYHHRQAPFQNMKLVPCQMCGKKWVPETILATCEPP 414
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BLAST of mRNA_P-littoralis_Contig141.62.1 vs. uniprot
Match: A0A7S2RRS9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2RRS9_9STRA)

HSP 1 Score: 67.0 bits (162), Expect = 2.610e-11
Identity = 25/38 (65.79%), Postives = 33/38 (86.84%), Query Frame = 2 
Query:  218 HVPYHHRKAPFADMRLVPCGMCGRKWVAETVLSTVEAP 331
            HVPYHHR APF++M+LVPC +CG+KWV E +L+T+E P
Sbjct:   70 HVPYHHRLAPFSNMKLVPCLLCGKKWVPEVILATIEPP 107
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BLAST of mRNA_P-littoralis_Contig141.62.1 vs. uniprot
Match: A0A7S4JAY9_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4JAY9_9STRA)

HSP 1 Score: 68.6 bits (166), Expect = 3.330e-11
Identity = 27/38 (71.05%), Postives = 33/38 (86.84%), Query Frame = 2 
Query:  218 HVPYHHRKAPFADMRLVPCGMCGRKWVAETVLSTVEAP 331
            HVPYHHR APFA+M+LVPC +CG+KWV E +L+TVE P
Sbjct:  539 HVPYHHRLAPFANMKLVPCLLCGKKWVPEVILATVEPP 576
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BLAST of mRNA_P-littoralis_Contig141.62.1 vs. uniprot
Match: A0A7S4N180_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4N180_9STRA)

HSP 1 Score: 68.6 bits (166), Expect = 3.490e-11
Identity = 27/38 (71.05%), Postives = 33/38 (86.84%), Query Frame = 2 
Query:  218 HVPYHHRKAPFADMRLVPCGMCGRKWVAETVLSTVEAP 331
            HVPYHHR APFA+M+LVPC +CG+KWV E +L+TVE P
Sbjct:  408 HVPYHHRLAPFANMKLVPCLLCGKKWVPEVILATVEPP 445
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BLAST of mRNA_P-littoralis_Contig141.62.1 vs. uniprot
Match: A0A7S4VGH9_9STRA (Hypothetical protein n=4 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4VGH9_9STRA)

HSP 1 Score: 67.0 bits (162), Expect = 1.210e-10
Identity = 26/38 (68.42%), Postives = 32/38 (84.21%), Query Frame = 2 
Query:  218 HVPYHHRKAPFADMRLVPCGMCGRKWVAETVLSTVEAP 331
            HVPYHHR APF +M+LVPC +CG+KWV E +L+TVE P
Sbjct:  363 HVPYHHRLAPFTNMKLVPCLLCGKKWVPEVILATVEPP 400
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BLAST of mRNA_P-littoralis_Contig141.62.1 vs. uniprot
Match: A0A7S0CD59_9STRA (Hypothetical protein (Fragment) n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0CD59_9STRA)

HSP 1 Score: 63.9 bits (154), Expect = 1.410e-10
Identity = 25/38 (65.79%), Postives = 30/38 (78.95%), Query Frame = 2 
Query:  218 HVPYHHRKAPFADMRLVPCGMCGRKWVAETVLSTVEAP 331
            HVPYHHR APF +M+LVPC  CG+KWV E +L+T E P
Sbjct:   73 HVPYHHRLAPFTNMKLVPCLQCGKKWVPEMILATCEPP 110
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BLAST of mRNA_P-littoralis_Contig141.62.1 vs. uniprot
Match: B8BXV2_THAPS (C2 domain-containing protein (Fragment) n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BXV2_THAPS)

HSP 1 Score: 66.6 bits (161), Expect = 1.630e-10
Identity = 26/38 (68.42%), Postives = 32/38 (84.21%), Query Frame = 2 
Query:  218 HVPYHHRKAPFADMRLVPCGMCGRKWVAETVLSTVEAP 331
            HVPYHHR APF +M+LVPC +CG+KWV E +L+TVE P
Sbjct:  609 HVPYHHRLAPFTNMKLVPCLLCGKKWVPEIILATVEPP 646
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BLAST of mRNA_P-littoralis_Contig141.62.1 vs. uniprot
Match: A0A836CKY6_9STRA (C2 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CKY6_9STRA)

HSP 1 Score: 66.2 bits (160), Expect = 2.290e-10
Identity = 30/46 (65.22%), Postives = 34/46 (73.91%), Query Frame = 2 
Query:  200 GRAPCF--HVPYHHRKAPFADMRLVPCGMCGRKWVAETVLSTVEAP 331
            G  PC   HVPY HR APF  MRL PC +C RKWVA+TVL+T+EAP
Sbjct:  632 GVRPCSYCHVPYQHRLAPFGSMRLTPCCVCRRKWVAQTVLATIEAP 677
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig141.62.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FIM0_ECTSI6.380e-2881.08Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S2PHZ0_9STRA1.080e-1171.05Hypothetical protein (Fragment) n=1 Tax=Leptocylin... [more]
K0T113_THAOC1.370e-1171.05Uncharacterized protein n=1 Tax=Thalassiosira ocea... [more]
A0A7S2RRS9_9STRA2.610e-1165.79Hypothetical protein (Fragment) n=1 Tax=Eucampia a... [more]
A0A7S4JAY9_9STRA3.330e-1171.05Hypothetical protein n=1 Tax=Odontella aurita TaxI... [more]
A0A7S4N180_9STRA3.490e-1171.05Hypothetical protein n=1 Tax=Odontella aurita TaxI... [more]
A0A7S4VGH9_9STRA1.210e-1068.42Hypothetical protein n=4 Tax=Ditylum brightwellii ... [more]
A0A7S0CD59_9STRA1.410e-1065.79Hypothetical protein (Fragment) n=1 Tax=Proboscia ... [more]
B8BXV2_THAPS1.630e-1068.42C2 domain-containing protein (Fragment) n=1 Tax=Th... [more]
A0A836CKY6_9STRA2.290e-1065.22C2 domain-containing protein n=1 Tax=Tribonema min... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig141contigP-littoralis_Contig141:394825..395594 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size335
Hectar predicted targeting categoryother localisation
Exons2
Cds size333
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789660.0924144-CDS-P-littoralis_Contig141:394825..3950011680789660.0924144-CDS-P-littoralis_Contig141:394825..395001Pylaiella littoralis U1_48CDSP-littoralis_Contig141 394826..395001 -
1680789660.1017628-CDS-P-littoralis_Contig141:395437..3955941680789660.1017628-CDS-P-littoralis_Contig141:395437..395594Pylaiella littoralis U1_48CDSP-littoralis_Contig141 395438..395594 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig141.62.1prot_P-littoralis_Contig141.62.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig141 394826..395594 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig141.62.1

>prot_P-littoralis_Contig141.62.1 ID=prot_P-littoralis_Contig141.62.1|Name=mRNA_P-littoralis_Contig141.62.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=111bp
QGGSSSSSSSEQPTILKTAAFAAVVDGGVVGGSRRRRRTTVVIGSKAEKP
LQDVIRAAGVDAVRAVRPCSLLPCSVPSPQGAVRRHASRAVRDVRAQVGG
GDRSVYGRGTG
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mRNA from alignment at P-littoralis_Contig141:394825..395594-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig141.62.1 ID=mRNA_P-littoralis_Contig141.62.1|Name=mRNA_P-littoralis_Contig141.62.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=770bp|location=Sequence derived from alignment at P-littoralis_Contig141:394825..395594- (Pylaiella littoralis U1_48)
CAGGGCGGCAGCAGCAGCAGCAGCAGCAGCGAACAACCAACAATACTCAA
AACGGCGGCATTCGCAGCCGTCGTTGATGGAGGCGTCGTCGGGGGAAGCC
GGAGGAGGAGGAGGACGACCGTGGTCATCGGCTCGAAGGCTGAAAAACCG
CTCCAAGGTGTTCATTGGACTGATGGGTTGGGGTGCTTGTTGAGCGAGGT
CGGGGGGGGCTAAGCGTAGTTTTGTGCTGCTTGCTTTACTGGTGTCGATT
GACCGTCGATGACGCATCCATCTCGAGGTGGAGCATCGTTCGTTCCCACT
TTTACCTTGAAACTGTACATACACTTTTGACGTATGATATCTTGCATGAG
AACACCCTTGCATGTGGTGCAGGGCGGTTGTTGTGAAGCAGTAAAGCCCA
CCCTTTTTTTATTTGATCCGCCGGACCCGGCGGCGCCGATATATACCACC
CCCTCCCCCCCCCCCCTTCTTGCAATGCGGCCGAGGTTCTATCGTACCCC
CCGTCGCCCACGCGTAGCCCCCCCCTTCCCCGGTGCCCCGTCACGCCTGT
CGCGCCGAACGCCCCCCCCGTGGCGAAGAAACTTGCCGGTCAGACGTCAT
CCGAGCAGCCGGAGTCGATGCCGTTCGGGCGGTGAGGCCGTGCTCCCTGC
TTCCATGTTCCGTACCATCACCGCAAGGCGCCGTTCGCCGACATGCGTCT
CGTGCCGTGCGGGATGTGCGGGCGCAAGTGGGTGGCGGAGACCGTTCTGT
CTACGGTCGAGGCACCGGAG
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Coding sequence (CDS) from alignment at P-littoralis_Contig141:394825..395594-

>mRNA_P-littoralis_Contig141.62.1 ID=mRNA_P-littoralis_Contig141.62.1|Name=mRNA_P-littoralis_Contig141.62.1|organism=Pylaiella littoralis U1_48|type=CDS|length=333bp|location=Sequence derived from alignment at P-littoralis_Contig141:394825..395594- (Pylaiella littoralis U1_48)
CAGGGCGGCAGCAGCAGCAGCAGCAGCAGCGAACAACCAACAATACTCAA
AACGGCGGCATTCGCAGCCGTCGTTGATGGAGGCGTCGTCGGGGGAAGCC
GGAGGAGGAGGAGGACGACCGTGGTCATCGGCTCGAAGGCTGAAAAACCG
CTCCAAGACGTCATCCGAGCAGCCGGAGTCGATGCCGTTCGGGCGGTGAG
GCCGTGCTCCCTGCTTCCATGTTCCGTACCATCACCGCAAGGCGCCGTTC
GCCGACATGCGTCTCGTGCCGTGCGGGATGTGCGGGCGCAAGTGGGTGGC
GGAGACCGTTCTGTCTACGGTCGAGGCACCGGA
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