mRNA_P-littoralis_Contig141.55.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig141.55.1
Unique NamemRNA_P-littoralis_Contig141.55.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
[Close]
BLAST of mRNA_P-littoralis_Contig141.55.1 vs. uniprot
Match: A0A6H5J7R8_9PHAE (TYR protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J7R8_9PHAE)

HSP 1 Score: 53.1 bits (126), Expect = 1.080e-5
Identity = 26/34 (76.47%), Postives = 31/34 (91.18%), Query Frame = 1 
Query:    1 LQERIMVKYVRREIRTLTDEEREELFDAVRGLCT 102
            L+E++MVKYVRRE+RTLTDEEREELFDA+  L T
Sbjct:  227 LEEKVMVKYVRRELRTLTDEEREELFDAMYTLWT 260
[Close]
BLAST of mRNA_P-littoralis_Contig141.55.1 vs. uniprot
Match: D8LC42_ECTSI (TYRosinase family member (Tyr-4) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LC42_ECTSI)

HSP 1 Score: 53.1 bits (126), Expect = 1.080e-5
Identity = 26/32 (81.25%), Postives = 30/32 (93.75%), Query Frame = 1 
Query:    1 LQERIMVKYVRREIRTLTDEEREELFDAVRGL 96
            LQE++MVKYVRREIRTLTD+EREELFDA+  L
Sbjct:  247 LQEKVMVKYVRREIRTLTDDEREELFDAMFAL 278
[Close]
BLAST of mRNA_P-littoralis_Contig141.55.1 vs. uniprot
Match: D8LC46_ECTSI (Tyrosinase_Cu-bd domain-containing protein n=3 Tax=Ectocarpus TaxID=2879 RepID=D8LC46_ECTSI)

HSP 1 Score: 50.8 bits (120), Expect = 6.980e-5
Identity = 24/28 (85.71%), Postives = 28/28 (100.00%), Query Frame = 1 
Query:    4 QERIMVKYVRREIRTLTDEEREELFDAV 87
            QE++MVKYVRREIRTLTD+EREELFDA+
Sbjct:  264 QEKVMVKYVRREIRTLTDDEREELFDAM 291
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig141.55.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5J7R8_9PHAE1.080e-576.47TYR protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 Ta... [more]
D8LC42_ECTSI1.080e-581.25TYRosinase family member (Tyr-4) n=1 Tax=Ectocarpu... [more]
D8LC46_ECTSI6.980e-585.71Tyrosinase_Cu-bd domain-containing protein n=3 Tax... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig141contigP-littoralis_Contig141:384679..385029 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size351
Hectar predicted targeting categoryother localisation
Exons1
Cds size336
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789660.2867284-CDS-P-littoralis_Contig141:384678..3850141680789660.2867284-CDS-P-littoralis_Contig141:384678..385014Pylaiella littoralis U1_48CDSP-littoralis_Contig141 384679..385014 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789660.298554-UTR-P-littoralis_Contig141:385014..3850291680789660.298554-UTR-P-littoralis_Contig141:385014..385029Pylaiella littoralis U1_48UTRP-littoralis_Contig141 385015..385029 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig141.55.1prot_P-littoralis_Contig141.55.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig141 384679..385014 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig141.55.1

>prot_P-littoralis_Contig141.55.1 ID=prot_P-littoralis_Contig141.55.1|Name=mRNA_P-littoralis_Contig141.55.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=112bp
MVKYVRREIRTLTDEEREELFDAVRGLCTWNSNWLLLPLLHPASPLLRIQ
FPAFARTDLKHFSTLIIGVWIWYISWGQRSGVLVRVTGKLRATCCMDGCV
QCKGCFASTAI*
back to top

mRNA from alignment at P-littoralis_Contig141:384679..385029-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig141.55.1 ID=mRNA_P-littoralis_Contig141.55.1|Name=mRNA_P-littoralis_Contig141.55.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=351bp|location=Sequence derived from alignment at P-littoralis_Contig141:384679..385029- (Pylaiella littoralis U1_48)
CTGCAAGAGAGGATCATGGTGAAGTACGTTCGCAGGGAAATCAGGACTCT
CACGGACGAGGAGCGAGAAGAGCTGTTCGACGCGGTGAGAGGCTTGTGCA
CTTGGAATTCAAATTGGTTGCTGCTGCCGCTCCTTCATCCAGCTAGCCCG
CTGCTGCGTATCCAGTTTCCTGCATTTGCCCGCACTGATTTGAAGCATTT
TTCGACGCTGATAATTGGTGTGTGGATATGGTACATATCATGGGGACAGC
GGTCCGGTGTCCTCGTGCGTGTGACAGGCAAACTCCGGGCTACCTGCTGC
ATGGACGGGTGTGTACAATGCAAAGGATGCTTCGCGTCTACAGCAATATA
A
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig141:384679..385029-

>mRNA_P-littoralis_Contig141.55.1 ID=mRNA_P-littoralis_Contig141.55.1|Name=mRNA_P-littoralis_Contig141.55.1|organism=Pylaiella littoralis U1_48|type=CDS|length=336bp|location=Sequence derived from alignment at P-littoralis_Contig141:384679..385029- (Pylaiella littoralis U1_48)
ATGGTGAAGTACGTTCGCAGGGAAATCAGGACTCTCACGGACGAGGAGCG
AGAAGAGCTGTTCGACGCGGTGAGAGGCTTGTGCACTTGGAATTCAAATT
GGTTGCTGCTGCCGCTCCTTCATCCAGCTAGCCCGCTGCTGCGTATCCAG
TTTCCTGCATTTGCCCGCACTGATTTGAAGCATTTTTCGACGCTGATAAT
TGGTGTGTGGATATGGTACATATCATGGGGACAGCGGTCCGGTGTCCTCG
TGCGTGTGACAGGCAAACTCCGGGCTACCTGCTGCATGGACGGGTGTGTA
CAATGCAAAGGATGCTTCGCGTCTACAGCAATATAA
back to top