mRNA_P-littoralis_Contig1408.9.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1408.9.1
Unique NamemRNA_P-littoralis_Contig1408.9.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1408.9.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1408contigP-littoralis_Contig1408:14875..15709 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size358
Hectar predicted targeting categorymitochondrion
Exons2
Cds size354
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789659.5635242-CDS-P-littoralis_Contig1408:14874..152021680789659.5635242-CDS-P-littoralis_Contig1408:14874..15202Pylaiella littoralis U1_48CDSP-littoralis_Contig1408 14875..15202 +
1680789659.5748792-CDS-P-littoralis_Contig1408:15681..157071680789659.5748792-CDS-P-littoralis_Contig1408:15681..15707Pylaiella littoralis U1_48CDSP-littoralis_Contig1408 15682..15707 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1408.9.1prot_P-littoralis_Contig1408.9.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1408 14875..15707 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1408.9.1

>prot_P-littoralis_Contig1408.9.1 ID=prot_P-littoralis_Contig1408.9.1|Name=mRNA_P-littoralis_Contig1408.9.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=118bp
RRSGATARPPTAVHLPLPAGTKRQRRLPLLAPRSRHHGSIQLAAIQVTSN
TRELQVDTLARGVLATAAGLTATVIRATSPTRYGAITPAATTAAASRAPT
RAPALLDPTGPAAARRRD
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mRNA from alignment at P-littoralis_Contig1408:14875..15709+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1408.9.1 ID=mRNA_P-littoralis_Contig1408.9.1|Name=mRNA_P-littoralis_Contig1408.9.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=835bp|location=Sequence derived from alignment at P-littoralis_Contig1408:14875..15709+ (Pylaiella littoralis U1_48)
CGTCGAAGCGGAGCAACCGCACGGCCTCCAACGGCAGTGCATCTTCCTCT
TCCGGCCGGAACAAAAAGGCAGCGAAGGCTTCCTCTTCTAGCTCCAAGAA
GCCGGCACCACGGAAGCATACAGCTCGCGGCGATACAAGTGACGAGCAAC
ACCAGGGAACTTCAGGTGGACACACTCGCTCGAGGCGTACTCGCCACCGC
CGCGGGTCTGACAGCGACGGTGATTCGAGCGACAAGTCCAACACGATACG
GAGCTATCACTCCGGCAGCGACGACGGCGGCAGCGTCTCGAGCTCCCACA
CGAGCGCCAGCTCTACTAGACCCGACAGGCAAGTGACTCCTTCGCTAGAC
ACAGTTGCCTCCGGCAACCACGTTGCACTTGCCCGCAACGGTGCCATGGT
CGTCTACGACGGCGCGCAAAATGATAGGCCTCTCTTCGCGTGGGGCAAGA
GATCGCCAACAGGACATTGACGCTGACAATTTTAAACAGCAAGAGAAGCA
CCACATTTCGGTAACTCGTAAATACCCAAGGACCGAGTTTAGAAATGTCG
AGCAGATCCATCCCCAGCTGCCTTTCCCTGCTTCTGTGAGCGCTAACAGT
AATGCATTAGGACAATTTTTGGATACTACCAAAAAGGCAATGGCAGATAT
TCTCAGCCAAGCTGACCCTTTGCTTCTCTTCGAGAATTCTTCTGGATGGG
TTCGGGGCTGGGAAAGACCCATCCAGAAGTGCATCACCAAAACCATCCCG
CCGCGAACTGATGAAACAGCAAATTTGACCTCTGTTGTCACCACCCTATT
CGACCAGGTCCGGCAGCGGCTCGACGAAGGGATGA
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Coding sequence (CDS) from alignment at P-littoralis_Contig1408:14875..15709+

>mRNA_P-littoralis_Contig1408.9.1 ID=mRNA_P-littoralis_Contig1408.9.1|Name=mRNA_P-littoralis_Contig1408.9.1|organism=Pylaiella littoralis U1_48|type=CDS|length=354bp|location=Sequence derived from alignment at P-littoralis_Contig1408:14875..15709+ (Pylaiella littoralis U1_48)
CGTCGAAGCGGAGCAACCGCACGGCCTCCAACGGCAGTGCATCTTCCTCT
TCCGGCCGGAACAAAAAGGCAGCGAAGGCTTCCTCTTCTAGCTCCAAGAA
GCCGGCACCACGGAAGCATACAGCTCGCGGCGATACAAGTGACGAGCAAC
ACCAGGGAACTTCAGGTGGACACACTCGCTCGAGGCGTACTCGCCACCGC
CGCGGGTCTGACAGCGACGGTGATTCGAGCGACAAGTCCAACACGATACG
GAGCTATCACTCCGGCAGCGACGACGGCGGCAGCGTCTCGAGCTCCCACA
CGAGCGCCAGCTCTACTAGACCCGACAGGTCCGGCAGCGGCTCGACGAAG
GGAT
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