mRNA_P-littoralis_Contig1407.2.1 (mRNA) Pylaiella littoralis U1_48
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Overview
Homology
BLAST of mRNA_P-littoralis_Contig1407.2.1 vs. uniprot
Match: D7G2N0_ECTSI (Uncharacterized protein n=4 Tax=Ectocarpus TaxID=2879 RepID=D7G2N0_ECTSI) HSP 1 Score: 378 bits (971), Expect = 1.520e-120 Identity = 170/257 (66.15%), Postives = 206/257 (80.16%), Query Frame = 1
Query: 394 HGMAWPDGADVASHILPLYNYVTNIDRTDDGGYYGNVLGSPECGCIEEMPIVSTAACTRYGINGMEECTDNMLLKQYRSKRAGQPNGKMNFNLVGDCNNDEVPDFDFGTCSDNVYMCCWTENNGEGMEDNTDVCRV------GQT-EYPGESEGEVHCHGLVWPEDATDSYIQLLAQYVENFDHKNDRGYYGNLPGAPMCGCIEDMPEVSRADCSTPRVE--RAGKYKACTNNDLLTAYLEEYPGGELNNLVEQCDN 1137
HG AW D AD+ SHILPLY+YVTN++RTDDGGYYGNV G P CGCIE+MP+VS AAC+++G G+E C DN L QY+ K +P G+M +NLV +C+N++VPD+DF TC+ N YMCCWTEN+G+GM DNTDVCRV G+T EYPGESEGEVHCHG VWPEDATD YI LLAQ+V++FDH++ RGY+GN+ GAPMCGCIE+MP+VS ADC+T E R GK+ ACTNNDL T Y EEYP GEL+NLV +CDN
Sbjct: 228 HGFAWADDADIDSHILPLYHYVTNVNRTDDGGYYGNVEGVPSCGCIEDMPVVSDAACSKFGGEGIEPCWDNSLRSQYKYK-LDEPKGEMEYNLVRECDNEDVPDYDFRTCNHNTYMCCWTENDGQGMADNTDVCRVIDYPSMGETTEYPGESEGEVHCHGFVWPEDATDKYIHLLAQFVQHFDHRDRRGYFGNIEGAPMCGCIEEMPQVSEADCTTYDNEPGREGKFTACTNNDLRTRYEEEYPMGELDNLVGECDN 483
BLAST of mRNA_P-littoralis_Contig1407.2.1 vs. uniprot
Match: D7G2N2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2N2_ECTSI) HSP 1 Score: 377 bits (968), Expect = 9.460e-117 Identity = 169/258 (65.50%), Postives = 206/258 (79.84%), Query Frame = 1
Query: 394 HGMAWPDGADVASHILPLYNYVTNIDRTDDGGYYGNVLGSPECGCIEEMPIVSTAACTRYGINGMEECTDNMLLKQYRSKRAGQPNGKMNFNLVGDCNNDEVPDFDFGTCSDNVYMCCWTENNGEGMEDNTDVCRV------GQT-EYPGESEGEVHCHGLVWPEDATDSYIQLLAQYVENFDHKNDRGYYGNLPGAPMCGCIEDMPEVSRADCSTPRVE--RAGKYKACTNNDLLTAYLEEYPGGELNNLVEQCDNE 1140
HG AW DGAD+ SHILPLY+YVTN++RTDDGGYYGNV G P CGCIE+MP+VS AAC+R+G G+E C N L Y++ R +P G++ +NLV +C+N++VPD+DF TC+ N YMCCWTEN+G+GM DNTDVCRV G+T EYPGESEGEVHCHG VWPEDATD YI LLAQ+V++FDH++ RGY+GN+ GAPMCGCIE+MP+VS ADC+T E R GK+ ACT NDL T Y EEYP GEL+NLV +CDNE
Sbjct: 185 HGFAWADGADIDSHILPLYHYVTNVNRTDDGGYYGNVEGVPSCGCIEDMPVVSDAACSRFGREGIEPCGANSLRSHYKN-RLDEPKGELEYNLVRECDNEDVPDYDFRTCNHNTYMCCWTENDGQGMADNTDVCRVIDYPSMGETTEYPGESEGEVHCHGFVWPEDATDKYIHLLAQFVQHFDHRDRRGYFGNIEGAPMCGCIEEMPQVSEADCTTYDNEPGREGKFTACTKNDLRTRYEEEYPMGELDNLVGECDNE 441
BLAST of mRNA_P-littoralis_Contig1407.2.1 vs. uniprot
Match: D7FT55_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FT55_ECTSI) HSP 1 Score: 363 bits (932), Expect = 6.170e-115 Identity = 166/257 (64.59%), Postives = 200/257 (77.82%), Query Frame = 1
Query: 394 HGMAWPDGADVASHILPLYNYVTNIDRTDDGGYYGNVLGSPECGCIEEMPIVSTAACTRYGINGMEECTDNMLLKQYRSKRAGQPNGKMNFNLVGDCNNDEVPDFDFGTCSDNVYMCCWTENNGEGMEDNTDVCRV------GQT-EYPGESEGEVHCHGLVWPEDATDSYIQLLAQYVENFDHKNDRGYYGNLPGAPMCGCIEDMPEVSRADCSTPRV--ERAGKYKACTNNDLLTAYLEEYPGGELNNLVEQCDN 1137
HG AW +GADV +HILPLY+YV N+ RT++GG+YGNV G+PECGCIEEMP VS + C+RY G+ C +N LL QYR R G+P G M+ NLV C+N++VPD+D+G+CS N YMCCWTEN+GEGM DNTDVCRV G+T E+PG+SEGEVHCHG VWPEDATD YI LL+Q+V+NFDH++ RGYYGN+ GAPMCGCIE+MP VS ADC+T ER GK+ ACT NDL T Y EYP GEL NLV+ CDN
Sbjct: 214 HGFAWVEGADVDTHILPLYHYVKNVGRTEEGGFYGNVEGAPECGCIEEMPQVSYSECSRYSWEGIVGCGNNGLLSQYRG-RLGEPYGPMDDNLVRTCDNEDVPDYDYGSCSHNTYMCCWTENDGEGMADNTDVCRVVDYPSMGETLEFPGDSEGEVHCHGFVWPEDATDKYIHLLSQFVQNFDHRDRRGYYGNIEGAPMCGCIEEMPVVSEADCTTYDTDPEREGKFTACTKNDLRTRYEAEYPTGELANLVDTCDN 469
BLAST of mRNA_P-littoralis_Contig1407.2.1 vs. uniprot
Match: D7FT54_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FT54_ECTSI) HSP 1 Score: 325 bits (833), Expect = 6.070e-101 Identity = 147/258 (56.98%), Postives = 190/258 (73.64%), Query Frame = 1
Query: 394 HGMAWPDGADVASHILPLYNYVTNIDRTDDGGYYGNVLGSPECGCIEEMPIVSTAACTRYGINGMEECTDNMLLKQYRSKRAGQPNGKMNFNLVGDCNNDEVPDFDFGTCSDNVYMCCWTENNGEGMEDNTDVCRV------GQT-EYPGESEGEVHCHGLVWPEDATDSYIQLLAQYVENFDHKNDRGYYGNLPGAPMCGCIEDMPEVSRADCS--TPRVERAGKYKACTNNDLLTAYLEEYPGGELNNLVEQCDNE 1140
HG W DGADV ++ILPLY+ V N RT++GGYYGNV G+P+CGC+EEMP+VS + C+R+ +G+ +C ++ L Y S R +PNG + NLV C+N +VPDFDF C + YMCCWTEN+ +G+ DNTDVCR+ G+T EYPG+SEG+VHCHG+VWPEDATD YI LLAQYV+ FDH ++GYYGN+ GAPMCGC EDMPEVS+ADC+ +P E + + C NDL T Y YP G+L+NLV +CDN+
Sbjct: 162 HGFGWADGADVNTNILPLYHSVINTGRTEEGGYYGNVEGAPQCGCLEEMPVVSFSECSRFDGDGITDCGEHGLYSNYVS-RIDEPNGPLEDNLVRICDNYDVPDFDFRECDSHTYMCCWTENDAKGVLDNTDVCRIHDYPSAGETLEYPGDSEGDVHCHGIVWPEDATDKYIHLLAQYVQTFDHIGNKGYYGNIEGAPMCGCAEDMPEVSKADCTNYSPTEEDEDRIRGCDPNDLRTRYDVLYPDGDLDNLVGRCDNQ 418
BLAST of mRNA_P-littoralis_Contig1407.2.1 vs. uniprot
Match: A0A6H5L319_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L319_9PHAE) HSP 1 Score: 264 bits (675), Expect = 2.320e-77 Identity = 145/347 (41.79%), Postives = 184/347 (53.03%), Query Frame = 1
Query: 394 HGMAWPDGADVASHILPLYNYVTNIDRTDDGGYY-----GNVLGSPECGCIEEMPIVSTAACTRYGINGMEECTDNMLLKQYRSKRAGQPNGKMNFNLVGDCNNDEVPDFDFGTCSDNVYMCCWTENNGEGMEDNT----------------------------------------DVCRV-------GQTEYPGESEGEVHCHGLVWPEDATDSYIQLLAQYVENFDHKNDRGYYG---------------------------------------------NLPGAPMCGCIEDMPEVSRADCSTPRV--ERAGKYKACTNNDLLTAYLEEYPGGELNNLVEQCDN 1137
HG AW +GADV +HILPLY+YV N+ RT++ G+Y +V G+PECGCIEE+P VS + C+RY G+ C +N LL QYR G+P G M+ NLV C+N+++PD+D G+CS N YMCC TEN+G+GM +NT DVCRV G E+ G+SE E H HG VW EDATD YI LL+Q+V+ FDH++ RGYYG ++ GAPM GC+E+MP VS AD +T ER GK+ ACT NDL T Y E+YP GEL NLV DN
Sbjct: 96 HGFAWAEGADVDTHILPLYHYVKNVGRTEEAGFYEMKLPDSVEGTPECGCIEEIPSVSCSECSRYSWEGIAGCGNNGLLSQYRGC-LGEPCGPMDDNLVRTCDNEDIPDYDHGSCSHNTYMCCLTENDGQGMAENTVRRRVPAVASCVEFSCYSADRKDVGLTMLSVILGHLGATKDVCRVLDYPSVGGALEFAGDSEREAHRHGFVWTEDATDKYIHLLSQFVQKFDHRDRRGYYGKYITVGKAAHNVIMVNGRTTGPGEDNTNNPLSPPPNVSHVILVVTSIEGAPMYGCVEEMPVVSEADGTTYDTDPEREGKFTACTTNDLCTRYAEDYPTGELANLVGTYDN 441
BLAST of mRNA_P-littoralis_Contig1407.2.1 vs. uniprot
Match: A0A6H5JT81_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JT81_9PHAE) HSP 1 Score: 253 bits (647), Expect = 1.480e-75 Identity = 130/257 (50.58%), Postives = 157/257 (61.09%), Query Frame = 1
Query: 394 HGMAWPDGADVASHILPLYNYVTNIDRTDDGGYYGNVLGSPECGCIEEMPIVSTAACTRYGINGMEECTDNMLLKQYRSKRAGQPNGKMNFNLVGDCNNDEVPDFDFGTCSDNVYMCCWTENNGEGMEDNTDVCRV------GQT-EYPGESEGEVHCHGLVWPEDATDSYIQLLAQYVENFDHKNDRGYYGNLPGAPMCGCIEDMPEVSRADCSTPRVE--RAGKYKACTNNDLLTAYLEEYPGGELNNLVEQCDN 1137
HG AW DGAD+ SHILPLY+YVTN++RTDDGGYYGNV G P CGCIE+MP+VS AAC+++G G+E C DN L QY+ K +P G+M +NLV +C+N++VPD+DF TC+ N YMCCWTEN+G+GM DNTDVCRV G+T EYPG SEG EVS ADC+T E R GK+ ACT NDL T Y EEYP GEL+NLV +CDN
Sbjct: 64 HGFAWADGADIDSHILPLYHYVTNVNRTDDGGYYGNVEGVPSCGCIEDMPVVSDAACSKFGGEGIEPCWDNSLRSQYKYK-LDEPKGEMEYNLVRECDNEDVPDYDFRTCNHNTYMCCWTENDGQGMADNTDVCRVIDYPSMGETTEYPGGSEG-----------------------------------------------------EVSEADCTTYDNEPGREGKFTACTKNDLRTRYEEEYPMGELSNLVGECDN 266
BLAST of mRNA_P-littoralis_Contig1407.2.1 vs. uniprot
Match: D7G8D2_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8D2_ECTSI) HSP 1 Score: 168 bits (426), Expect = 1.260e-44 Identity = 78/150 (52.00%), Postives = 102/150 (68.00%), Query Frame = 1
Query: 697 VPDFDFGTCSDNVYMCCWTENNGEGMEDNTDVCRVGQTEYPGESEGEVHCHGLVWPEDATDSYIQLLAQYVENFDHKNDRGYYGNLPGAPMCGCIEDMPEVSRADCSTPR-VERAGK-YKACTNNDLLTAYLEEYPGGELNNL-VEQCDN 1137
V +FDF C N +MCCW NG ++DNTDVC E+PG+SEG VHCHG VWPE+A+D +I+ LA V +H +++ Y GN+PGAP+C C+E+MPEVSRADC+ R AG + AC+ NDL AY E YP G +L V++CDN
Sbjct: 51 VKNFDFNQCDYNTWMCCWDGRNGLAVKDNTDVCSYRGEEFPGDSEGPVHCHGFVWPENASDDFIKYLALDVAFINHVDEKAYTGNIPGAPVCHCLEEMPEVSRADCTQYRKANLAGSDFMACSKNDLRRAYKELYPTGRGRDLLVKKCDN 200
BLAST of mRNA_P-littoralis_Contig1407.2.1 vs. uniprot
Match: D7G8C5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8C5_ECTSI) HSP 1 Score: 169 bits (427), Expect = 5.940e-44 Identity = 78/152 (51.32%), Postives = 103/152 (67.76%), Query Frame = 1
Query: 691 DEVPDFDFGTCSDNVYMCCWTENNGEGMEDNTDVCRVGQTEYPGESEGEVHCHGLVWPEDATDSYIQLLAQYVENFDHKNDRGYYGNLPGAPMCGCIEDMPEVSRADCSTPR-VERAGK-YKACTNNDLLTAYLEEYPGGELNNL-VEQCDN 1137
+ V +FDF C N +MCCW NG ++DNTDVC E+PG+SEG VHCHG VWPE+A+D +I+ LA V +H +++ Y GN+PGAP+C C+E+MPEVSRADC+ R AG + AC+ NDL AY E YP G +L V++CDN
Sbjct: 113 ERVKNFDFNQCDYNTWMCCWDGRNGLAVKDNTDVCSYRGEEFPGDSEGPVHCHGFVWPENASDDFIKYLALDVAFINHVDEKAYTGNIPGAPVCHCLEEMPEVSRADCTQYRKANLAGSDFMACSKNDLRRAYKELYPTGRGRDLLVKKCDN 264
BLAST of mRNA_P-littoralis_Contig1407.2.1 vs. uniprot
Match: D8LHS4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHS4_ECTSI) HSP 1 Score: 138 bits (348), Expect = 8.060e-35 Identity = 63/114 (55.26%), Postives = 79/114 (69.30%), Query Frame = 1
Query: 739 MCCWTENNGEG-MEDNTDVCRVGQTEYPGESEGEVHCHGLVWPEDATDSYIQLLAQYVENFDHKNDRGYYGNLPGAPMCGCIEDMPEVSRADCST--PRVERAGKYKACTNNDL 1071
MCCW+ GE + DNTDV R G TE+PGESEG+VHCHGLVWPE ++D YI LA V H ++GY+G++PGAP+C C+E MPEVSR+DCS P + + AC NDL
Sbjct: 1 MCCWSSRVGEEPVSDNTDVYRYGSTEFPGESEGDVHCHGLVWPEGSSDEYIIYLALDVAYNHHVEEKGYFGHIPGAPVCDCLERMPEVSRSDCSQYRPAHLKGSDFMACPKNDL 114
BLAST of mRNA_P-littoralis_Contig1407.2.1 vs. uniprot
Match: D7FT53_ECTSI (Imm downregulated 17 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FT53_ECTSI) HSP 1 Score: 127 bits (319), Expect = 3.770e-30 Identity = 60/100 (60.00%), Postives = 73/100 (73.00%), Query Frame = 1
Query: 394 HGMAWPDGADVASHILPLYNYVTNIDRTDD-GGYYGNVLGSPECGCIEEMPIVSTAACTRYGINGMEECTDNMLLKQYRSKRAGQPNGKMNFNLVGDCNN 690
HG AWP+GADV +HILPLY+YV NI RT++ GGYYGNV G+PECGCIEEMP VS A C+R+ I+G+ EC + L QY R P G+M NLV C+N
Sbjct: 83 HGFAWPEGADVNNHILPLYHYVKNIGRTEEEGGYYGNVEGAPECGCIEEMPQVSFAECSRFSIDGIGECGEGGLYSQYNG-RLDAPYGEMEHNLVRSCDN 181 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1407.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig1407.2.1 >prot_P-littoralis_Contig1407.2.1 ID=prot_P-littoralis_Contig1407.2.1|Name=mRNA_P-littoralis_Contig1407.2.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=251bp MAWPDGADVASHILPLYNYVTNIDRTDDGGYYGNVLGSPECGCIEEMPIVback to top mRNA from alignment at P-littoralis_Contig1407:16547..20091- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig1407.2.1 ID=mRNA_P-littoralis_Contig1407.2.1|Name=mRNA_P-littoralis_Contig1407.2.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=3545bp|location=Sequence derived from alignment at P-littoralis_Contig1407:16547..20091- (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig1407:16547..20091- >mRNA_P-littoralis_Contig1407.2.1 ID=mRNA_P-littoralis_Contig1407.2.1|Name=mRNA_P-littoralis_Contig1407.2.1|organism=Pylaiella littoralis U1_48|type=CDS|length=753bp|location=Sequence derived from alignment at P-littoralis_Contig1407:16547..20091- (Pylaiella littoralis U1_48)back to top |