mRNA_P-littoralis_Contig1404.4.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1404.4.1
Unique NamemRNA_P-littoralis_Contig1404.4.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig1404.4.1 vs. uniprot
Match: D7G5U8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5U8_ECTSI)

HSP 1 Score: 94.4 bits (233), Expect = 2.460e-20
Identity = 49/120 (40.83%), Postives = 75/120 (62.50%), Query Frame = 1 
Query:   10 EDWFTFSQHLNALVRKSFTLGLLNDRELLDQLQFRGDDMVEQGGHPAAVLRVFSEMLPNKRHVSRETTFRDRGKLRDINKLHS----ASTAVSGAAHGYPGPSHLAAHHAARVAASSTAP 357
            EDW++F  H++A++ K  TLGL+  R +LD   +RG+DM+ Q G P  V  +F++++PN R++SRETT RDR +L+ I+ +      A+T  +    GY G    AA  A+ +AA  TAP
Sbjct:  199 EDWYSFKPHVDAIIAKGVTLGLMTWRSMLDDFVYRGNDMLLQFGVPEKVFGIFTDLMPNARNISRETTLRDRSRLKAIDTISGGWKLAATLATAHLSGYAGAYQQAASQASTIAAGITAP 318
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1404.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G5U8_ECTSI2.460e-2040.83Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1404contigP-littoralis_Contig1404:20952..21344 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size394
Hectar predicted targeting categoryother localisation
Exons1
Cds size393
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789659.100672-CDS-P-littoralis_Contig1404:20951..213441680789659.100672-CDS-P-littoralis_Contig1404:20951..21344Pylaiella littoralis U1_48CDSP-littoralis_Contig1404 20952..21344 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1404.4.1prot_P-littoralis_Contig1404.4.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1404 20952..21344 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1404.4.1

>prot_P-littoralis_Contig1404.4.1 ID=prot_P-littoralis_Contig1404.4.1|Name=mRNA_P-littoralis_Contig1404.4.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=131bp
SNTEDWFTFSQHLNALVRKSFTLGLLNDRELLDQLQFRGDDMVEQGGHPA
AVLRVFSEMLPNKRHVSRETTFRDRGKLRDINKLHSASTAVSGAAHGYPG
PSHLAAHHAARVAASSTAPQPRSRGSSVRGG
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mRNA from alignment at P-littoralis_Contig1404:20952..21344+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1404.4.1 ID=mRNA_P-littoralis_Contig1404.4.1|Name=mRNA_P-littoralis_Contig1404.4.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=393bp|location=Sequence derived from alignment at P-littoralis_Contig1404:20952..21344+ (Pylaiella littoralis U1_48)
TCCAACACAGAAGATTGGTTTACTTTCTCCCAACACCTGAACGCCCTCGT
CAGGAAATCTTTTACACTTGGCCTCCTCAACGATCGTGAACTCCTGGACC
AACTCCAGTTTCGTGGAGACGATATGGTTGAACAAGGAGGACACCCAGCC
GCCGTTTTGCGCGTCTTCTCCGAGATGCTTCCGAACAAACGTCATGTCTC
GCGGGAGACCACCTTTCGGGACCGCGGAAAACTCCGCGACATCAACAAGC
TCCACAGCGCGTCAACCGCAGTGTCCGGAGCAGCGCACGGATATCCTGGC
CCGTCCCATTTAGCCGCTCACCACGCTGCACGTGTGGCGGCGTCGTCCAC
CGCTCCACAGCCGCGGAGTAGGGGTTCGAGCGTTCGCGGTGGG
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Coding sequence (CDS) from alignment at P-littoralis_Contig1404:20952..21344+

>mRNA_P-littoralis_Contig1404.4.1 ID=mRNA_P-littoralis_Contig1404.4.1|Name=mRNA_P-littoralis_Contig1404.4.1|organism=Pylaiella littoralis U1_48|type=CDS|length=393bp|location=Sequence derived from alignment at P-littoralis_Contig1404:20952..21344+ (Pylaiella littoralis U1_48)
TCCAACACAGAAGATTGGTTTACTTTCTCCCAACACCTGAACGCCCTCGT
CAGGAAATCTTTTACACTTGGCCTCCTCAACGATCGTGAACTCCTGGACC
AACTCCAGTTTCGTGGAGACGATATGGTTGAACAAGGAGGACACCCAGCC
GCCGTTTTGCGCGTCTTCTCCGAGATGCTTCCGAACAAACGTCATGTCTC
GCGGGAGACCACCTTTCGGGACCGCGGAAAACTCCGCGACATCAACAAGC
TCCACAGCGCGTCAACCGCAGTGTCCGGAGCAGCGCACGGATATCCTGGC
CCGTCCCATTTAGCCGCTCACCACGCTGCACGTGTGGCGGCGTCGTCCAC
CGCTCCACAGCCGCGGAGTAGGGGTTCGAGCGTTCGCGGTGGG
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