mRNA_P-littoralis_Contig1403.4.1 (mRNA) Pylaiella littoralis U1_48
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Overview
Homology
BLAST of mRNA_P-littoralis_Contig1403.4.1 vs. uniprot
Match: A0A6H5KVV7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVV7_9PHAE) HSP 1 Score: 133 bits (335), Expect = 9.870e-34 Identity = 97/192 (50.52%), Postives = 112/192 (58.33%), Query Frame = 2
Query: 11 MIESATTKLNPMR-----FGESSSLLYQIAARNLREYHGVPSMTAGSLEKTMYLLQLRPGRLVVQGIASQKLLEAETTTPDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSTQDDRSTKDGRAPANNKR---PIHASLVAAGIKLRPRETRPLLRALGVRPHRLVKLGLVQRETLLLSRHRG 562
M+ TT N M + +LLY+ ARNLREYHGVPSMTA +LEKTM LL+LRPGRLVVQG+A +KLL+ + D XXXXXXX + D+ + NKR P+HA+LVAAGI LRPRETRPLLRALGV PHRLVKLGLVQRE L SR G
Sbjct: 1 MVSINTTSNNAMNNETMDSSNNGTLLYKATARNLREYHGVPSMTADNLEKTMVLLRLRPGRLVVQGLAPEKLLKGFSAA-DAHADTTDSSGSSGSEVEPEQADDNQVSDDXXXXXXXSGDTEHDNIRKHNSLGFETNKRSKHPVHAALVAAGITLRPRETRPLLRALGVGPHRLVKLGLVQREELRRSRPGG 191
BLAST of mRNA_P-littoralis_Contig1403.4.1 vs. uniprot
Match: A0A6H5K3J2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3J2_9PHAE) HSP 1 Score: 105 bits (261), Expect = 5.100e-24 Identity = 87/163 (53.37%), Postives = 101/163 (61.96%), Query Frame = 2
Query: 8 SMIESATTKLNPMRFGESSSLLYQIAARNLREYHGVPSMTAGSLEKTMYLLQLRPGRLVVQGIASQKLLEAETTTPDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSTQ---DDRSTKDGR--APANNKRPIHASLVAAGIKLRPRETRPLLR 481
SM + T K + R E + LLY+ AARNL EYHGVPSMTAG LEKTM LLQLRPGRLV QG+A ++LLE ++ D XXXXXXXXXXXXXXXX T D +T+D +K PIHA VAAG++LRPRETRPLLR
Sbjct: 30 SMAKCVTNKPSCKRAVEPNPLLYKAAARNLCEYHGVPSMTAGGLEKTMVLLQLRPGRLVAQGLAPKQLLEGKSAAGDAXXXXXXXXXXXXXXXXEVDPEQADNNQVSDDSNTNSRDGTDIEHDHVATQDSIDIETGASKHPIHAVFVAAGVQLRPRETRPLLR 192
BLAST of mRNA_P-littoralis_Contig1403.4.1 vs. uniprot
Match: A0A6H5L2C8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2C8_9PHAE) HSP 1 Score: 100 bits (249), Expect = 3.210e-22 Identity = 97/156 (62.18%), Postives = 108/156 (69.23%), Query Frame = 2
Query: 122 MTAGSLEKTMYLLQLRPGRLVVQGIASQKLLEAETTTPDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX---------STQDDRSTKDGRAPANNKRPIHASLVAAGIKLRPRETRPLLRALGVRPHRLVKLGLVQRETLLLSRHRG 562
MTAG LEKTM LLQLRPGRLV QG+A ++LL+ ++ D XXXXXXXXXXXXXXXXXXX XXXXXXXXX +TQD + G + K PIHA VAAG++LRPRETRPLLRALGV PHRLVKLGLVQRE SR G
Sbjct: 1 MTAGGLEKTMVLLQLRPGRLVAQGLAPKQLLDGKSAAGDAXXXXXXXXXXXXXXXXXXXPEQADNNPVSXXXXXXXXXXXXIEHDNIATQDSIDMEAGAS----KHPIHAVFVAAGVQLRPRETRPLLRALGVGPHRLVKLGLVQREEARRSRPGG 152
BLAST of mRNA_P-littoralis_Contig1403.4.1 vs. uniprot
Match: A0A6H5KBH6_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBH6_9PHAE) HSP 1 Score: 92.4 bits (228), Expect = 4.410e-20 Identity = 47/77 (61.04%), Postives = 56/77 (72.73%), Query Frame = 2
Query: 8 SMIESATTKLNPMRFGESSSLLYQIAARNLREYHGVPSMTAGSLEKTMYLLQLRPGRLVVQGIASQKLLEAETTTPD 238
SM T K + R GES+ LLY+ AARNLREYHGVPS+T G LEKTM LLQLRPGRLV QG+A ++ LE ++ D
Sbjct: 36 SMTAFVTNKPSCKRMGESNPLLYKAAARNLREYHGVPSITVGGLEKTMVLLQLRPGRLVAQGLAPKQFLEGKSAADD 112
BLAST of mRNA_P-littoralis_Contig1403.4.1 vs. uniprot
Match: A0A6H5JCG1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCG1_9PHAE) HSP 1 Score: 92.4 bits (228), Expect = 1.220e-18 Identity = 67/178 (37.64%), Postives = 87/178 (48.88%), Query Frame = 2
Query: 8 SMIESATTKLNPMRFGESSSLLYQIAARNLREYHGVPSMTAGSLEKTMYLLQLRPGRLVVQGIASQKLLEAETTTP-DXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSTQDDRSTKDGRAPANNKRPIHASLVAAGIKLRPRETRPLLRALGVRPHRLVKLGLVQRET 538
SM E T+K + R GE + L+++ AARNLREYHGVPS+T G LE TM LL+LRP RLV QG+A + LL+ +T D + + RA +K PI A VA G++LRPRETRPLLR + + V L +V T
Sbjct: 20 SMTEFVTSKPSCKRTGEPNPLMFKAAARNLREYHGVPSITPGGLETTMVLLELRPARLVAQGLAPKILLKGNSTAGVDADSTDGSGGFEAEEEQANNQFSHDLSSNSSDGGDTGNDNIVTQNSIGFEARA---SKHPIQAVFVAVGVQLRPRETRPLLRGVVLLTSSTVALEVVATTT 194
BLAST of mRNA_P-littoralis_Contig1403.4.1 vs. uniprot
Match: A0A6H5KI70_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KI70_9PHAE) HSP 1 Score: 85.9 bits (211), Expect = 9.270e-18 Identity = 45/74 (60.81%), Postives = 52/74 (70.27%), Query Frame = 2
Query: 11 MIESATTKLNPMRFGESSSLLYQIAARNLREYHGVPSMTAGSLEKTMYLLQLRPGRLVVQGIASQKLLEAETTT 232
M T K + GES+ LLY+ AARNLREYHGVPSMTAG LEKTM LLQLRPGRLV QG+A + + + T
Sbjct: 33 MTACVTNKPSCKLTGESNPLLYKAAARNLREYHGVPSMTAGGLEKTMVLLQLRPGRLVAQGLAPKXIKNNNSNT 106
BLAST of mRNA_P-littoralis_Contig1403.4.1 vs. uniprot
Match: A0A6H5KAY7_9PHAE (PB1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAY7_9PHAE) HSP 1 Score: 89.7 bits (221), Expect = 1.140e-17 Identity = 70/190 (36.84%), Postives = 90/190 (47.37%), Query Frame = 2
Query: 14 IESATTKLNPMRFGESSSLLYQIAARNLREYHGVPSMTAGSLEKTMYLLQLRPGRLVVQGIASQKLL---EAETTTP---------DXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSTQDDRSTK--DGRAPANNKRPIHASLVAAGIKLRPRETRPLLRALGVRPHRLVKLGLVQRETL 541
I +A + + +S LY+IAARNLREY+GVPSMT L KT+ L+L P RLV QG+A + LL +AET D S+ D+ + + D AP + IH + +A GI+LRPRE RPLL AL VRP RL KLGLV + L
Sbjct: 115 ISAAGKENKATKMPDSEETLYKIAARNLREYNGVPSMTPPKLVKTLAFLKLNPQRLVKQGLAPKMLLARMKAETANNAKLSKVRLGDGKNNEDLAEWVAAGMEFMSVEDDKKEWNDGFVSVEPAETSSSDNGNEEENDDAAPEVKQNLIHKAFIAGGIQLRPREVRPLLVALDVRPWRLAKLGLVDGKDL 304
BLAST of mRNA_P-littoralis_Contig1403.4.1 vs. uniprot
Match: A0A6H5JPU3_9PHAE (PB1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPU3_9PHAE) HSP 1 Score: 89.7 bits (221), Expect = 1.150e-17 Identity = 68/184 (36.96%), Postives = 84/184 (45.65%), Query Frame = 2
Query: 14 IESATTKLNPMRFGESSSLLYQIAARNLREYHGVPSMTAGSLEKTMYLLQLRPGRLVVQGIASQKLL-----EAETTTPDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSTQ--------DDRSTKDGRAPANNKRPIHASLVAAGIKLRPRETRPLLRALGVRPHRLVKLGLV 526
I +A + R +S LY+IAARNLREY+GVPSMT L KT+ L+L P RLV QG+A + LL EA S + +D K+ AP K IH + +A GI+LRPRE RPLL AL V P+RL KLGLV
Sbjct: 106 ISAAGKENKATRMPDSEEKLYKIAARNLREYNGVPSMTPPKLVKTLAFLKLNPQRLVKQGLAPKVLLARMKAEAANNAKVSKVPLGDGKNNEDLAESVAAGMELMSVEDGKKEWNDGFVSVEPAEISFPANDNEEKNDAAPEAKKNLIHKAFIAGGIQLRPREVRPLLVALDVLPYRLAKLGLV 289
BLAST of mRNA_P-littoralis_Contig1403.4.1 vs. uniprot
Match: D8LN66_ECTSI (PB1 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LN66_ECTSI) HSP 1 Score: 89.4 bits (220), Expect = 1.540e-17 Identity = 67/176 (38.07%), Postives = 81/176 (46.02%), Query Frame = 2
Query: 56 ESSSLLYQIAARNLREYHGVPSMTAGSLEKTMYLLQLRPGRLVVQGIASQKLL-----EAETTTPDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSTQ---------DDRSTKDGRAPANNKRPIHASLVAAGIKLRPRETRPLLRALGVRPHRLVKLGLVQRETL 541
+S + LY+IAARNLREY+GVPSMT L KT+ L+L P RLV QG+A + LL EA S + D+ D AP K IH + +A GI+LRPRE RPLL AL VRP RL KLGLV + L
Sbjct: 118 DSEARLYKIAARNLREYNGVPSMTPPKLVKTLAFLKLNPQRLVKQGLAPKNLLPRMKAEAANNAKVSKVPLGDGKNNEDLAESVAAGMELMSLEDDKKEWNDGFVSVEPADTSSPDNDNEEKNDAVAPEVKKNLIHKAFIAGGIQLRPREVRPLLVALDVRPCRLAKLGLVDGKDL 293
BLAST of mRNA_P-littoralis_Contig1403.4.1 vs. uniprot
Match: D8LN68_ECTSI (PB1 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LN68_ECTSI) HSP 1 Score: 87.8 bits (216), Expect = 6.640e-17 Identity = 69/190 (36.32%), Postives = 85/190 (44.74%), Query Frame = 2
Query: 14 IESATTKLNPMRFGESSSLLYQIAARNLREYHGVPSMTAGSLEKTMYLLQLRPGRLVVQGIASQKLL-----EAETTTPDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSTQ---------DDRSTKDGRAPANNKRPIHASLVAAGIKLRPRETRPLLRALGVRPHRLVKLGLVQRETL 541
I +A + P + + LY+IAARNLREY+GVPSMT L KT+ L+L P RLV QG+A + LL EA S + D+ D AP K IH + +A GI+LRPRE RPLL AL VRP RL KLGLV + L
Sbjct: 88 ISAAGKENKPANKPDPEARLYKIAARNLREYNGVPSMTPLKLVKTLAFLELNPQRLVKQGLAPKVLLARMKAEAANNAKVSKVPLGDGKNNEDLAESVAAGMELMSVEDDKKEWNDGFVSVEPADTSSPGNDNEEKNDAVAPEVKKNLIHKAFIAGGIQLRPREVRPLLVALDVRPCRLAKLGLVNGKDL 277 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1403.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 16
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig1403.4.1 >prot_P-littoralis_Contig1403.4.1 ID=prot_P-littoralis_Contig1403.4.1|Name=mRNA_P-littoralis_Contig1403.4.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=184bp MIESATTKLNPMRFGESSSLLYQIAARNLREYHGVPSMTAGSLEKTMYLLback to top mRNA from alignment at P-littoralis_Contig1403:18506..19067+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig1403.4.1 ID=mRNA_P-littoralis_Contig1403.4.1|Name=mRNA_P-littoralis_Contig1403.4.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=562bp|location=Sequence derived from alignment at P-littoralis_Contig1403:18506..19067+ (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig1403:18506..19067+ >mRNA_P-littoralis_Contig1403.4.1 ID=mRNA_P-littoralis_Contig1403.4.1|Name=mRNA_P-littoralis_Contig1403.4.1|organism=Pylaiella littoralis U1_48|type=CDS|length=552bp|location=Sequence derived from alignment at P-littoralis_Contig1403:18506..19067+ (Pylaiella littoralis U1_48)back to top |