mRNA_P-littoralis_Contig140.98.2 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig140.98.2
Unique NamemRNA_P-littoralis_Contig140.98.2
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig140.98.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig140contigP-littoralis_Contig140:459608..461061 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size336
Hectar predicted targeting categoryother localisation
Exons3
Cds size336
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789653.3717628-CDS-P-littoralis_Contig140:459607..4597741680789653.3717628-CDS-P-littoralis_Contig140:459607..459774Pylaiella littoralis U1_48CDSP-littoralis_Contig140 459608..459774 +
1680789653.3812575-CDS-P-littoralis_Contig140:460523..4606361680789653.3812575-CDS-P-littoralis_Contig140:460523..460636Pylaiella littoralis U1_48CDSP-littoralis_Contig140 460524..460636 +
1680789653.3920424-CDS-P-littoralis_Contig140:461005..4610611680789653.3920424-CDS-P-littoralis_Contig140:461005..461061Pylaiella littoralis U1_48CDSP-littoralis_Contig140 461006..461061 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig140.98.2prot_P-littoralis_Contig140.98.2Pylaiella littoralis U1_48polypeptideP-littoralis_Contig140 459608..461061 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig140.98.2

>prot_P-littoralis_Contig140.98.2 ID=prot_P-littoralis_Contig140.98.2|Name=mRNA_P-littoralis_Contig140.98.2|organism=Pylaiella littoralis U1_48|type=polypeptide|length=112bp
LRQSPVESNVQPWFLSAAKRYGGVAAAAIITTQTFSLDVAAATATTLLIT
ILLHHCRCNEDSRTNRRNRGSASACAGVAALRPHSRTSRPCKIGKGHPWR
STLCLKSMKGV*
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mRNA from alignment at P-littoralis_Contig140:459608..461061+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig140.98.2 ID=mRNA_P-littoralis_Contig140.98.2|Name=mRNA_P-littoralis_Contig140.98.2|organism=Pylaiella littoralis U1_48|type=mRNA|length=1454bp|location=Sequence derived from alignment at P-littoralis_Contig140:459608..461061+ (Pylaiella littoralis U1_48)
CTTCGTCAGTCACCCGTCGAGAGCAATGTTCAACCTTGGTTTCTATCCGC
TGCCAAAAGATACGGGGGAGTAGCAGCAGCAGCAATAATAACAACGCAGA
CCTTCAGCCTGGATGTCGCTGCCGCTACCGCCACTACGCTTCTGATCACA
ATACTGCTGCATCATTGGTGAGATGAGAGCGGGTGGGGAGACAGAATGCT
CACGAAAGCTCTGCTTGGATATATGGTTGCCTTTTTTGTGCGTCGTTCAA
TGCATTAAGTACTACACGTATCGTATCGTACAAGACTTGTAACTTGATTT
ACTTCTACTGCTGTACTCTATTGTACTTTTCTCTGAATGTCTTGAAATGC
TCCGTCTATGAAACAACCTCAACAGCAGGAGCAACAGCAGCAACAGCAGC
AGTGCCAACTGCTGCAGTGTCCCCACCACATCTGCACATATCGCAACAAC
GGCAGCACTGTATCCATCACATGAGTACATGCAGGTAGTGTGTGTATCAG
TGTGTTCACATGACACTCCATCCCTTCCGGACGCCGGTCTACACCTTTCG
GCACGGAGTATGTGTGTGGGCTCATCATCAGCCGTGGGCACACAGATCGT
CATCCCAGATGTTTCTTGCTCCCCCTTCCTCGCCCGGGACTTGCCTTTAT
TTTTACCTCGAGAAGGGTTCGGCCGTCCCCTCGTCTCGTCAACTTTCGAA
CCGAATTGTGCAGTCGTTCGTATGCATGATGTGCGAAAAAAAAACAGCAC
TTGGACACTTGTGCAATGCTGCTGTACTGCTTGTACAGACTTTGAAGTAG
CATCGAACGGTGCTCTCGGTGAGGTCAAACTAACTCGGTCCGTAAACTAT
CGCTGTATTTTTTGTGTTGTTATTTGACCGCACTTGTTTTGGGTTGCTCA
ATCAACACCACACCAGCAGATGCAACGAGGACAGCAGAACGAACAGGAGG
AACAGGGGCTCAGCCAGCGCTTGTGCAGGCGTGGCAGCCTTGAGGCCTCA
CTCCCGCACGAGTCGTCCCTGTAAAATCGGTGGGTACATCACAAGTGCAC
TCACGCACACATTCCACGCACACTGACTGAACGCACACGCGGGTGAGTGT
GAGGAGTGAGGAGCTCATTCGTTGACATCCACCTCGCCTCGAAACCAACC
TCGTGTCGAATGTATTGCCTGGTTTGTTTTCCGAAGTTGACGACCTAAGC
ACAACCTGGAGCTGAAACGCTGCTGGGCGTTCATTTACCGTGTAGACTAT
TGTGGAGACAGAAATAGAACACAAGTTTGAACAAGCTCCAGCTGCAGCCC
CATGATGTGTCATAACTGCAAAAACGAAAAAAAAAAGCTGAGACTGACGA
TAACCTGAGACGCTCCTGTTGGCCCCGCTCACTTCGCGTCAAACCCAGGA
AAAGGGCACCCCTGGAGATCGACCTTGTGCCTGAAGTCTATGAAGGGGGT
CTGA
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Coding sequence (CDS) from alignment at P-littoralis_Contig140:459608..461061+

>mRNA_P-littoralis_Contig140.98.2 ID=mRNA_P-littoralis_Contig140.98.2|Name=mRNA_P-littoralis_Contig140.98.2|organism=Pylaiella littoralis U1_48|type=CDS|length=336bp|location=Sequence derived from alignment at P-littoralis_Contig140:459608..461061+ (Pylaiella littoralis U1_48)
CTTCGTCAGTCACCCGTCGAGAGCAATGTTCAACCTTGGTTTCTATCCGC
TGCCAAAAGATACGGGGGAGTAGCAGCAGCAGCAATAATAACAACGCAGA
CCTTCAGCCTGGATGTCGCTGCCGCTACCGCCACTACGCTTCTGATCACA
ATACTGCTGCATCATTGCAGATGCAACGAGGACAGCAGAACGAACAGGAG
GAACAGGGGCTCAGCCAGCGCTTGTGCAGGCGTGGCAGCCTTGAGGCCTC
ACTCCCGCACGAGTCGTCCCTGTAAAATCGGAAAAGGGCACCCCTGGAGA
TCGACCTTGTGCCTGAAGTCTATGAAGGGGGTCTGA
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