mRNA_P-littoralis_Contig14.94.7 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig14.94.7
Unique NamemRNA_P-littoralis_Contig14.94.7
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig14.94.7 vs. uniprot
Match: D8LN68_ECTSI (PB1 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LN68_ECTSI)

HSP 1 Score: 316 bits (809), Expect = 1.060e-94
Identity = 195/328 (59.45%), Postives = 224/328 (68.29%), Query Frame = 2
Query:  131 TRSIKITFQGASRDVEVAADQATLAGLQAAIASAFEADLPPRSGDDEAPKDSDLRFTYKDPDGDSIVFDKDSELSLALRLCPSSLEISAAGKEKVKPANKHDREHRLYKVAARNLREYNGVPSMTPTKLTKTLAFLKLNPRRLVNQGLAPQVLLADVEDENAKSNENTAAATQQHPLGDDDCNEDLAESVAAGVEAMRVEDDDKKEWNDGFVSVEPAQSAAPAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEAAKGKRPVDRPVHKAFVAGGIKLLPREIWPLLVALGVGPRRLVKLGHVNAEHLRAMAVAHKRVNNKQQ 1114
            T SIKI FQG SRDV V     TLA LQAAIA AF+A+LP RS   EA KD+DL FTYKDPDGD IVFDKDSEL+LA+RLCP SLEISAAGKE  KPANK D E RLYK+AARNLREYNGVPSMTP KL KTLAFL+LNP+RLV QGLAP+VLLA ++ E A +     A   + PLGD   NEDLAESVAAG+E M VEDD KKEWNDGFVSVEPA +++P                                      A + K+ +   +HKAF+AGGI+L PRE+ PLLVAL V P RL KLG VN + LRAM  A K+V +K++
Sbjct:    3 TSSIKINFQGTSRDVNVPVP-VTLASLQAAIAGAFDAELPVRSPAGEAAKDTDLSFTYKDPDGDDIVFDKDSELNLAVRLCPGSLEISAAGKEN-KPANKPDPEARLYKIAARNLREYNGVPSMTPLKLVKTLAFLELNPQRLVKQGLAPKVLLARMKAEAANN-----AKVSKVPLGDGKNNEDLAESVAAGMELMSVEDD-KKEWNDGFVSVEPADTSSPGNDNEEKNDAV---------------------------APEVKKNL---IHKAFIAGGIQLRPREVRPLLVALDVRPCRLAKLGLVNGKDLRAMLQAEKKVAHKRR 292          
BLAST of mRNA_P-littoralis_Contig14.94.7 vs. uniprot
Match: D8LN66_ECTSI (PB1 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LN66_ECTSI)

HSP 1 Score: 308 bits (790), Expect = 9.450e-93
Identity = 194/338 (57.40%), Postives = 225/338 (66.57%), Query Frame = 2
Query:   98 NNNNMNTSTTATRSIKITFQGASRDVEVAADQATLAGLQAAIASAFEADLPPRSGDDEAPKDSDLRFTYKDPDGDSIVFDKDSELSLALRLCPSSLEISAAGKEKVKPANKHDREHRLYKVAARNLREYNGVPSMTPTKLTKTLAFLKLNPRRLVNQGLAPQVLLADVEDENAKSNENTAAATQQHPLGDDDCNEDLAESVAAGVEAMRVEDDDKKEWNDGFVSVEPAQSAAPAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEAAKGKRPVDRPVHKAFVAGGIKLLPREIWPLLVALGVGPRRLVKLGHVNAEHLRAMAVAHKRVNNKQ 1111
            NN + N +T  T SIKI FQGASRDV V A   TLA LQA IA+AF+A+LP RS   EA KD+DL FTYKDPDGD IVFDKDSEL LA+RLCP SLEISAAGKEK K A   D E RLYK+AARNLREYNGVPSMTP KL KTLAFLKLNP+RLV QGLAP+ LL  ++ E A +     A   + PLGD   NEDLAESVAAG+E M +EDD KKEWNDGFVSVEPA +++P                                      A + K+ +   +HKAF+AGGI+L PRE+ PLLVAL V P RL KLG V+ + LRAM  A K+  +K+
Sbjct:    8 NNRDNNDNTMTTSSIKINFQGASRDVNVPAP-VTLASLQAVIAAAFDAELPVRSPGGEAAKDTDLSFTYKDPDGDDIVFDKDSELKLAMRLCPGSLEISAAGKEK-KAAEMPDSEARLYKIAARNLREYNGVPSMTPPKLVKTLAFLKLNPQRLVKQGLAPKNLLPRMKAEAANN-----AKVSKVPLGDGKNNEDLAESVAAGMELMSLEDD-KKEWNDGFVSVEPADTSSPDNDNEEKNDAV---------------------------APEVKKNL---IHKAFIAGGIQLRPREVRPLLVALDVRPCRLAKLGLVDGKDLRAMLQAEKKTAHKR 307          
BLAST of mRNA_P-littoralis_Contig14.94.7 vs. uniprot
Match: A0A6H5JPU3_9PHAE (PB1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPU3_9PHAE)

HSP 1 Score: 301 bits (770), Expect = 9.200e-90
Identity = 189/330 (57.27%), Postives = 216/330 (65.45%), Query Frame = 2
Query:  122 TTATRSIKITFQGASRDVEVAADQATLAGLQAAIASAFEADLPPRSGDDEAPKDSDLRFTYKDPDGDSIVFDKDSELSLALRLCPSSLEISAAGKEKVKPANKHDREHRLYKVAARNLREYNGVPSMTPTKLTKTLAFLKLNPRRLVNQGLAPQVLLADVEDENAKSNENTAAATQQHPLGDDDCNEDLAESVAAGVEAMRVEDDDKKEWNDGFVSVEPAQSAAPAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEAAKGKRPVDRPVHKAFVAGGIKLLPREIWPLLVALGVGPRRLVKLGHVNAEHLRAMAVAHKRVNNKQ 1111
            T  T SIKITFQGASRDV V      LA LQAAIA+AF+ +LP RS   EA  D+DL FTYKDPDGD IVFDK+SEL LALRLCP SLEISAAGKE  K     D E +LYK+AARNLREYNGVPSMTP KL KTLAFLKLNP+RLV QGLAP+VLLA ++ E A +     A   + PLGD   NEDLAESVAAG+E M VED  KKEWNDGFVSVEPA+ + PA                                     A + K+ +   +HKAF+AGGI+L PRE+ PLLVAL V P RL KLG V  + LRAM  A K+  +K+
Sbjct:   18 TMTTSSIKITFQGASRDVNVRVP-VMLASLQAAIAAAFDVELPARSSAGEAANDTDLSFTYKDPDGDDIVFDKESELQLALRLCPGSLEISAAGKEN-KATRMPDSEEKLYKIAARNLREYNGVPSMTPPKLVKTLAFLKLNPQRLVKQGLAPKVLLARMKAEAANN-----AKVSKVPLGDGKNNEDLAESVAAGMELMSVEDG-KKEWNDGFVSVEPAEISFPANDNEEKNDA----------------------------APEAKKNL---IHKAFIAGGIQLRPREVRPLLVALDVLPYRLAKLGLVGGKDLRAMLRAEKKTAHKR 308          
BLAST of mRNA_P-littoralis_Contig14.94.7 vs. uniprot
Match: A0A6H5KAY7_9PHAE (PB1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAY7_9PHAE)

HSP 1 Score: 300 bits (767), Expect = 2.360e-89
Identity = 196/348 (56.32%), Postives = 226/348 (64.94%), Query Frame = 2
Query:   80 TTDNTI----NNNNMNTSTTATRSIKITFQGASRDVEVAADQATLAGLQAAIASAFEADLPPRSGDDEAPKDSDLRFTYKDPDGDSIVFDKDSELSLALRLCPSSLEISAAGKEKVKPANKHDREHRLYKVAARNLREYNGVPSMTPTKLTKTLAFLKLNPRRLVNQGLAPQVLLADVEDENAKSNENTAAATQQHPLGDDDCNEDLAESVAAGVEAMRVEDDDKKEWNDGFVSVEPAQSAAPAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEAAKGKRPVDRPVHKAFVAGGIKLLPREIWPLLVALGVGPRRLVKLGHVNAEHLRAMAVAHKRVNNKQ 1111
            T+ NTI    NN   N  T  T SIKI FQGASRDV V A  ATLA LQAAIA+ FE +LP RS   EA KD+DL FTYKDPDGD IVFDKDSEL+LALRLCP SLEISAAGKE  K     D E  LYK+AARNLREYNGVPSMTP KL KTLAFLKLNP+RLV QGLAP++LLA ++ E A +     A   +  LGD   NEDLAE VAAG+E M VEDD KKEWNDGFVSVEPA++++                                       A + K+ +   +HKAF+AGGI+L PRE+ PLLVAL V P RL KLG V+ + LRAM  A K+  +K+
Sbjct:    9 TSKNTIKYNRNNRYNNDKTMTTSSIKINFQGASRDVSVPAP-ATLARLQAAIAAVFEVELPVRSLTGEAAKDTDLSFTYKDPDGDDIVFDKDSELNLALRLCPGSLEISAAGKEN-KATKMPDSEETLYKIAARNLREYNGVPSMTPPKLVKTLAFLKLNPQRLVKQGLAPKMLLARMKAETANN-----AKLSKVRLGDGKNNEDLAEWVAAGMEFMSVEDD-KKEWNDGFVSVEPAETSS---------------------------SDNGNEEENDDAAPEVKQNL---IHKAFIAGGIQLRPREVRPLLVALDVRPWRLAKLGLVDGKDLRAMLQAEKKAAHKR 318          
BLAST of mRNA_P-littoralis_Contig14.94.7 vs. uniprot
Match: A0A6H5JQ17_9PHAE (PB1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQ17_9PHAE)

HSP 1 Score: 299 bits (766), Expect = 2.670e-88
Identity = 196/347 (56.48%), Postives = 225/347 (64.84%), Query Frame = 2
Query:   74 MNTTDNTINNNNMNTSTTATR-SIKITFQGASRDVEVAADQATLAGLQAAIASAFEADLPPRSGDDEAPKDSDLRFTYKDPDGDSIVFDKDSELSLALRLCPSSLEISAAGKEKVKPANKHDREHRLYKVAARNLREYNGVPSMTPTKLTKTLAFLKLNPRRLVNQGLAPQVLLADVEDENAKSNENTAAATQQHPLGDDDCNEDLAESVAAGVEAMRVEDDDKKEWNDGFVSVEPAQSAAPAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEAAKGKRPVDRPVHKAFVAGGIKLLPREIWPLLVALGVGPRRLVKLGHVNAEHLRAMAVAHKRVNNKQ 1111
            MN  ++  NNN  N   T T  SIKI FQGASRDV V A   +LA LQAAIA+AF+A+LP RS   EA KD+DL FTYKDPDGD IVFDKDSEL LA+RLCPSSLEISA  KE  +PA K D E RLYK+AARNLREYNGVPSMT  KL KTLAFLKLNP+RLV QGLAP+VLLA ++ E A +     A   + PLGD   NEDLAESVAAG+E M VEDD KKEWNDGFVS E   SAA                                       A + K+ +   +HKAF+ GGI+L PRE+ PLLVAL V P RL KLG V+ + LRAM  A K+  +K+
Sbjct:    1 MNAINHNNNNNRYNNDKTMTTPSIKINFQGASRDVNVPAP-VSLASLQAAIAAAFDAELPVRSPAGEAAKDTDLSFTYKDPDGDDIVFDKDSELKLAVRLCPSSLEISATLKES-EPAKKPDPEARLYKIAARNLREYNGVPSMTAPKLIKTLAFLKLNPQRLVKQGLAPKVLLARMKAEAANN-----AKVSKVPLGDGKNNEDLAESVAAGMELMSVEDD-KKEWNDGFVSAESDASAAAVPITAKTSTPDNDNEEENNDA-----------------APETKKDL---IHKAFITGGIQLRPREVRPLLVALDVRPCRLAKLGLVDGKDLRAMLRAEKKAAHKR 319          
BLAST of mRNA_P-littoralis_Contig14.94.7 vs. uniprot
Match: A0A6H5KB69_9PHAE (PB1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KB69_9PHAE)

HSP 1 Score: 287 bits (735), Expect = 1.620e-83
Identity = 187/327 (57.19%), Postives = 216/327 (66.06%), Query Frame = 2
Query:  131 TRSIKITFQGASRDVEVAADQATLAGLQAAIASAFEADLPPRSGDDEAPKDSDLRFTYKDPDGDSIVFDKDSELSLALRLCPSSLEISAAGKEKVKPANKHDREHRLYKVAARNLREYNGVPSMTPTKLTKTLAFLKLNPRRLVNQGLAPQVLLADVEDENAKSNENTAAATQQHPLGDDDCNEDLAESVAAGVEAMRVEDDDKKEWNDGFVSVEPAQSAAPAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEAAKGKRPVDRPVHKAFVAGGIKLLPREIWPLLVALGVGPRRLVKLGHVNAEHLRAMAVAHKRVNNKQ 1111
            T SIKI FQG SR+V V A   TLA LQA IA+AF+A+LP RS   EA KD+DL FTYKDPDGD IVFDKDSEL+LA+RLCP SLEISAAGKE  KP NK D E RLYK+AARNLREYNGVPSMT  KL KTLAFLKLNPRRLV QGLAP+ LLA ++ E A +N   +  T    LGD + NEDLAESVAAG+E M VEDD KKE N+GFVS +P  SAA                                       A + K+ +   +H AF+AGGI+L PRE+ PLLVAL V P RL KLG VN ++LRAM  A  +  +K+
Sbjct:    3 TSSIKINFQGTSRNVNVQAPF-TLASLQATIAAAFDAELPVRSPAGEATKDTDLSFTYKDPDGDDIVFDKDSELNLAVRLCPDSLEISAAGKEN-KPDNKPDPEGRLYKIAARNLREYNGVPSMTAPKLIKTLAFLKLNPRRLVKQGLAPKNLLARMKAE-AANNMKVSKVT----LGDGENNEDLAESVAAGMELMSVEDD-KKECNNGFVSAKPDASAAAVPITAKTSSPDNDNEEENDDA-----------------APEVKKNL---IHTAFIAGGIQLRPREVRPLLVALDVRPWRLAKLGLVNGKYLRAMLQAETKAAHKR 301          
BLAST of mRNA_P-littoralis_Contig14.94.7 vs. uniprot
Match: D8LN82_ECTSI (PB1 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LN82_ECTSI)

HSP 1 Score: 269 bits (688), Expect = 1.410e-79
Identity = 177/303 (58.42%), Postives = 198/303 (65.35%), Query Frame = 2
Query:   89 NTINNNNM--NTSTTATRSIKITFQGASRDVEVAADQATLAGLQAAIASAFEADLPPRSGDDEAPKDSDLRFTYKDPDGDSIVFDKDSELSLALRLCPSSLEISAAGKEKVKPANKHDREHRLYKVAARNLREYNGVPSMTPTKLTKTLAFLKLNPRRLVNQGLAPQVLLADVEDENAKSNENTAAATQQHPLGDDDCNEDLAESVAAGVEAMRVEDDDKKEWNDGFVSVEPAQSAAPAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEAAKGKRPVDRPVHKAFVAGGIKLLPRE 991
            NTI +NN   N     T SIKI FQGASRDV V A   TL  LQAAIA+AF+A+LP RS   EA KD+DL FTYKDPDGD IVFDKDSEL LA+RLCPSSLEISAA KE  KPANK D E RLYK+AARNLREYNGVPSMTP KL KTLAFLKLNP+RLV QGLAP+VLLA ++ E A +     A   + PLGD   NEDLA+SVAAG+E M VED  KKEWNDGFVS E    AA A                                     A + K+ +   +HKAF+AGGI+L PRE
Sbjct:    2 NTIKHNNCDNNDKMMTTSSIKINFQGASRDVNVPAP-VTLDSLQAAIAAAFDAELPVRSPAGEAAKDTDLSFTYKDPDGDDIVFDKDSELKLAVRLCPSSLEISAALKES-KPANKPDPEARLYKIAARNLREYNGVPSMTPPKLIKTLAFLKLNPQRLVKQGLAPKVLLARMKAEAANN-----AKVSKVPLGDGKNNEDLADSVAAGMELMSVED--KKEWNDGFVSAESDAPAAAAPITAETSSPDNDKEEENDDA-----------------APEVKKNL---IHKAFIAGGIQLRPRE 275          
BLAST of mRNA_P-littoralis_Contig14.94.7 vs. uniprot
Match: A0A6H5KI70_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KI70_9PHAE)

HSP 1 Score: 62.8 bits (151), Expect = 1.310e-7
Identity = 31/47 (65.96%), Postives = 36/47 (76.60%), Query Frame = 2
Query:  449 LYKVAARNLREYNGVPSMTPTKLTKTLAFLKLNPRRLVNQGLAPQVL 589
            LYK AARNLREY+GVPSMT   L KT+  L+L P RLV QGLAP+ +
Sbjct:   53 LYKAAARNLREYHGVPSMTAGGLEKTMVLLQLRPGRLVAQGLAPKXI 99          
BLAST of mRNA_P-littoralis_Contig14.94.7 vs. uniprot
Match: A0A6H5KBH6_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBH6_9PHAE)

HSP 1 Score: 61.2 bits (147), Expect = 6.410e-7
Identity = 31/48 (64.58%), Postives = 36/48 (75.00%), Query Frame = 2
Query:  449 LYKVAARNLREYNGVPSMTPTKLTKTLAFLKLNPRRLVNQGLAPQVLL 592
            LYK AARNLREY+GVPS+T   L KT+  L+L P RLV QGLAP+  L
Sbjct:   57 LYKAAARNLREYHGVPSITVGGLEKTMVLLQLRPGRLVAQGLAPKQFL 104          
BLAST of mRNA_P-littoralis_Contig14.94.7 vs. uniprot
Match: A0A6H5JCG1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCG1_9PHAE)

HSP 1 Score: 63.9 bits (154), Expect = 7.340e-7
Identity = 30/48 (62.50%), Postives = 38/48 (79.17%), Query Frame = 2
Query:  449 LYKVAARNLREYNGVPSMTPTKLTKTLAFLKLNPRRLVNQGLAPQVLL 592
            ++K AARNLREY+GVPS+TP  L  T+  L+L P RLV QGLAP++LL
Sbjct:   41 MFKAAARNLREYHGVPSITPGGLETTMVLLELRPARLVAQGLAPKILL 88          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig14.94.7 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 11
Match NameE-valueIdentityDescription
D8LN68_ECTSI1.060e-9459.45PB1 domain-containing protein n=1 Tax=Ectocarpus s... [more]
D8LN66_ECTSI9.450e-9357.40PB1 domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5JPU3_9PHAE9.200e-9057.27PB1 domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5KAY7_9PHAE2.360e-8956.32PB1 domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5JQ17_9PHAE2.670e-8856.48PB1 domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5KB69_9PHAE1.620e-8357.19PB1 domain-containing protein n=1 Tax=Ectocarpus s... [more]
D8LN82_ECTSI1.410e-7958.42PB1 domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5KI70_9PHAE1.310e-765.96Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KBH6_9PHAE6.410e-764.58Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5JCG1_9PHAE7.340e-762.50Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig14contigP-littoralis_Contig14:432558..436837 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size2649
Hectar predicted targeting categoryother localisation
Exons3
Cds size1764
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789648.8578799-UTR-P-littoralis_Contig14:432557..4326301680789648.8578799-UTR-P-littoralis_Contig14:432557..432630Pylaiella littoralis U1_48UTRP-littoralis_Contig14 432558..432630 +
1680789648.9015477-UTR-P-littoralis_Contig14:436025..4368371680789648.9015477-UTR-P-littoralis_Contig14:436025..436837Pylaiella littoralis U1_48UTRP-littoralis_Contig14 436026..436837 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789648.8679333-CDS-P-littoralis_Contig14:432630..4329751680789648.8679333-CDS-P-littoralis_Contig14:432630..432975Pylaiella littoralis U1_48CDSP-littoralis_Contig14 432631..432975 +
1680789648.8779693-CDS-P-littoralis_Contig14:434444..4356641680789648.8779693-CDS-P-littoralis_Contig14:434444..435664Pylaiella littoralis U1_48CDSP-littoralis_Contig14 434445..435664 +
1680789648.8908427-CDS-P-littoralis_Contig14:435826..4360251680789648.8908427-CDS-P-littoralis_Contig14:435826..436025Pylaiella littoralis U1_48CDSP-littoralis_Contig14 435827..436025 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig14.94.7prot_P-littoralis_Contig14.94.7Pylaiella littoralis U1_48polypeptideP-littoralis_Contig14 432631..436025 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig14.94.7

>prot_P-littoralis_Contig14.94.7 ID=prot_P-littoralis_Contig14.94.7|Name=mRNA_P-littoralis_Contig14.94.7|organism=Pylaiella littoralis U1_48|type=polypeptide|length=588bp
MNTTDNTINNNNMNTSTTATRSIKITFQGASRDVEVAADQATLAGLQAAI
ASAFEADLPPRSGDDEAPKDSDLRFTYKDPDGDSIVFDKDSELSLALRLC
PSSLEISAAGKEKVKPANKHDREHRLYKVAARNLREYNGVPSMTPTKLTK
TLAFLKLNPRRLVNQGLAPQVLLADVEDENAKSNENTAAATQQHPLGDDD
CNEDLAESVAAGVEAMRVEDDDKKEWNDGFVSVEPAQSAAPAAATAAAAG
TTTSDADADGPAATTGDDDGTDTDTDADEAAKGKRPVDRPVHKAFVAGGI
KLLPREIWPLLVALGVGPRRLVKLGHVNAEHLRAMAVAHKRVNNKQQRMA
RGSAGAAWNPWGPCGRMMQRGGGAGGGACGRRGAVAAGAGHRMGKMCGGR
GKPCGRGMMIGLHPHAPACLPPPPPFHMEDEDGMLFAPAPPAGDGGGRHG
GRRGGHRGGHGGPRSHSHPHHAPHHGHHAPHPHPHGYGDGEGRSSFGRGP
LPGMKGMLRALGRQRQHQHQHQSLPRKNRYEGRRTEGLTIREPFHPSGFC
AHAVQRTTSDADHFWFCLQKIVPTSTDERVLFLLYER*
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mRNA from alignment at P-littoralis_Contig14:432558..436837+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig14.94.7 ID=mRNA_P-littoralis_Contig14.94.7|Name=mRNA_P-littoralis_Contig14.94.7|organism=Pylaiella littoralis U1_48|type=mRNA|length=4280bp|location=Sequence derived from alignment at P-littoralis_Contig14:432558..436837+ (Pylaiella littoralis U1_48)
TGGGGATCTTCAGGAACTTCTCACCTTGCTCGTTCGCCGCCTCGTTCTTA ACCGCTCCGTCTCACTCTAAACCATGAACACCACCGACAACACCATCAAC AACAACAACATGAACACCTCCACCACTGCCACCCGTTCAATCAAGATCAC CTTCCAGGGCGCCTCTCGCGATGTCGAAGTTGCGGCTGACCAGGCCACGC TCGCCGGCCTTCAGGCGGCCATCGCGTCGGCCTTCGAGGCAGACCTGCCT CCCCGCTCCGGGGATGACGAGGCACCCAAAGACAGCGACCTGCGGTTCAC CTACAAGGACCCCGATGGAGACAGCATCGTATTCGACAAGGACTCGGAGC TGAGCCTGGCCCTGCGCCTGTGCCCCAGCTCGCTTGAGATCTCGGCCGCG GGCAAGGAGAAGGTGAAGGTAAGCGGAGAGTCCGGTCTACAGCAGTATCC CAGGACATGATGTGTTCTCTCCTGCCCCGGCCTTGTCTGATGGCCGCCGT AAATAGGACGCGGTGTCGGCAAGTGTTGGCGCCCTCCTCTACTATTCGTA TTGTGCTTGCAGCAGTAGTTGCGCCCGTCGGGTACTCGTGTACCCAGTAC ACGCCGTGTTGAGTTGACGTTGTTGGATAAAGCATCCCACTTCAGTGACG CCGGATTTAGCGGCGGGCGACTCCATGATACAGTACGTGATTGAAAAAGC GAGTCCACCGGAACAGGATACCACACAGACAACAACGCGAGAGTTGAACT TGGCCGCCGCCGCCGCCGCCGCTATGGAAGCCTTCCTGTCGCACTGATTG TTTCCTCTCCAAGCCGGCTTCGAGGTTTTTCCTCCAATCTGGCTTCGTGC CCTGCGTAGCTTTATTTACGGCAGTTGTTTATCCCGACGAAAGTCCACTG CAAAGTCCATTGCAAGTCTTCATTCGTTTGTCACAGGCAGGCGTTGCTGT ATTATGCTGCTGTGTTCACACATCCTACAGTCTATGTATTTACATCACAA CACATCGTATGTATGATAAATCACATGATACAAGTACTTCGTTTCGCGTA TCGATTTATCTCTCACACGGCGCCTTCCATTGCTACATCTCGACTCCGGA GACGTGGCCCCGCCGACCGACAAACATGGCTCTCTCTCTCTGTAGCTGTT TGTACATACAACCCGTCGTTCCATCTTGCGTGCGGGGGGGCGATATGTCC CGTCTATTCCTGTCCGCCCGAAATTGGCCCCGAACAGCATTGTGCGAATT ACTACTTCCGAGGTGTACAGACGGTCGATGACGCGTGTTTTTTTTTTCCC TATCTGACTCCTGACCTATGTGAATGGTTGTGCCCAAACATGATACTCTG CTGTATCATCTGCTGTTGTTGTTGTTGTTGATTCTCACATTAGCTCACTA CCGCCGCAGTCTAGCCCGTGGTCACAAACCAGGCACATATCGTGCTAGGA GGAAAAATAAATATATAAAATACATGGACTATGATCACCCAGTCAAATCA GATATGGTACCGTTGGGGTACCATCTGTTGTGGCCAGAATACCAAACAAA TACAGAAAAAAATAACAGGCTCGAAAGAAAAACAAAAATTGTGACAATAC TTGAAGTAGTTCTGTTCGTGAGCTCGATTCTCGTCTCCTTCCCAAGAGTA CGTCTCGCTCGTGTCACACGTTTTTGGTTGTACAACGATACGCTTCTACA GCTGTATTTTATCATATAACAGTAGTTTAGCTCTGGCCATGAACTGATTT TGTGTTTCCTTGTGTATCCACAACAAACAGCAGTTTGTCTGGTTCACCAT TCAGGATATCTCAACCTCCCCTCCCCTCCCCTCTCCCCACCCCGCCTCGG TGCCTCCTCTGTCCATTCCACCTCTCTTTACTTCTAGCCCGCCAACAAGC ACGACCGCGAACACAGGCTGTACAAGGTGGCCGCCCGTAACCTCCGCGAG TACAACGGCGTGCCCTCGATGACCCCGACGAAGCTCACCAAGACCCTGGC ATTCCTCAAGCTGAACCCGCGCCGCCTCGTGAACCAGGGCCTGGCCCCCC AAGTGCTGCTGGCTGACGTGGAGGACGAAAACGCCAAAAGCAACGAGAAC ACGGCGGCGGCAACGCAGCAGCATCCTCTAGGCGACGACGACTGCAACGA GGACCTCGCCGAATCGGTCGCCGCCGGCGTCGAGGCGATGAGGGTGGAAG ATGACGACAAGAAGGAGTGGAACGACGGTTTCGTGTCGGTTGAGCCCGCC CAGTCAGCCGCCCCAGCCGCCGCGACGGCAGCAGCCGCTGGAACTACGAC CTCCGATGCCGACGCCGATGGCCCCGCTGCCACCACTGGGGACGACGACG GCACCGATACCGATACCGACGCTGATGAGGCCGCCAAGGGAAAACGCCCC GTGGATCGCCCCGTGCACAAGGCCTTCGTCGCGGGCGGCATCAAGCTTCT GCCCCGCGAGATCTGGCCCCTGCTCGTCGCCCTGGGCGTCGGACCCCGCC GTCTGGTCAAGCTCGGTCACGTGAACGCCGAGCACCTCCGCGCCATGGCG GTTGCGCACAAGAGGGTGAACAACAAGCAGCAGCGCATGGCCCGCGGCAG TGCTGGTGCTGCGTGGAACCCCTGGGGGCCTTGCGGCCGCATGATGCAGA GGGGCGGCGGTGCTGGTGGTGGTGCTTGCGGCCGCCGCGGTGCCGTTGCT GCGGGTGCGGGACACAGGATGGGAAAAATGTGCGGCGGCCGTGGGAAGCC CTGTGGACGAGGCATGATGATAGGCCTCCACCCTCACGCCCCCGCCTGCC TCCCCCCCCCGCCCCCGTTCCACATGGAGGACGAGGACGGCATGTTGTTC GCTCCCGCTCCCCCTGCCGGTGATGGTGGCGGTCGCCACGGTGGTCGCCG CGGTGGTCACCGTGGTGGTCATGGCGGTCCTCGCTCCCACTCTCACCCCC ACCACGCCCCCCACCACGGCCACCACGCCCCCCACCCCCACCCCCACGGG TACGGGGACGGAGAGGGAAGGTCCAGTTTTGGCCGCGGCCCCCTCCCCGG GATGAAGGGAATGCTTCGGGCTCTTGGTCGTCAGCGCCAGCACCAGCACC AGCACCAGCACCAGCACGGCTACTACTACTGGGGGTGAGACCGCCATCGT CTCGACATCGAAGGAGGAGCCTCGCTTTATTCTGAGGATCCTAGCTTAAT TTCTTGGATGCTATTGCTGTGCGTATGTCGGTAGCTCTCTTTGTTTTGGT ATAGTTTGCAAGTGGGCAGAAGCCTCCCTCGGAAGAATCGATACGAGGGG CGGAGGACGGAAGGTTTGACGATACGAGAACCATTCCACCCGTCAGGCTT TTGCGCTCATGCAGTACAACGAACGACAAGCGACGCAGATCATTTTTGGT TTTGCTTACAAAAAATCGTCCCCACGTCGACGGACGAACGAGTTTTATTT TTATTATACGAACGATAGTATCAATGCCTCGGTTATTTTCTTCTCACTTG CTTATATCTCGAGAAGTGCGTGCGCATTGTAGATTGTTGCGGTCGACCGA CGCAGAATCGATGGTCGCGGTACGTCGCGCGAGGATAGGGGTCGTTAGAG TTGGGTGTAAGGTTGGGAAGAGTTTGGAGATAGGGCTTGCACTACTTGTT ATCCAGACGAAGAGTACAAGGCGAGTAAGTCGTTCATGAACAATCATGCC GCCGGGTTGCATGCGCATTTGCGTGCCGGATTATTCTCAAGAGCGGGATA TATCGAGGTGATGACCAGTAGCGTAAAAAGTGACAACACATTGTCGGAAA TCGGGAGGTGAAAGTAGCAGTCGCACGGACTGAACTACTTTGCTGGTGTG ATGTAGGAGCCTCAACAGGACGCTAAATGCAAGTTCGTGGAAGGGCTTGG TCCGATCAGAAGGCTAGCTTGCAAGTACAGCATTGAACGAGTCAGGGCTT TTGGACTTTGGCTGAGGGAGACGCACGTCGCGCAGCGGTGTGTCTCTTCT CAAGGGTGCGTGTAGGTTTCGTGTTTGAATAGCAGCAAGGACAGGGCGGT GTGTTGTAAGTGTTTGACGTGGTGCTTTTCTCGAGTCCTTGGTGCTGCTA CTGCTGTTGCAGCTGCTGAGAAATTTCTAGGGTGGGGCCGTCGTGCAGCA ACAGGAGGTTGTTTATGGGTCTAAGTGCACGGGGGGGTTGTTTTTGGAAT AAACATGGAGAAAAGCTTGAAGCTAGCTGTGTTTCAAGGAACATTTGAAT GGATGTTACTTCGAGAAAGATAATACTCCG
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Coding sequence (CDS) from alignment at P-littoralis_Contig14:432558..436837+

>mRNA_P-littoralis_Contig14.94.7 ID=mRNA_P-littoralis_Contig14.94.7|Name=mRNA_P-littoralis_Contig14.94.7|organism=Pylaiella littoralis U1_48|type=CDS|length=1764bp|location=Sequence derived from alignment at P-littoralis_Contig14:432558..436837+ (Pylaiella littoralis U1_48)
ATGAACACCACCGACAACACCATCAACAACAACAACATGAACACCTCCAC
CACTGCCACCCGTTCAATCAAGATCACCTTCCAGGGCGCCTCTCGCGATG
TCGAAGTTGCGGCTGACCAGGCCACGCTCGCCGGCCTTCAGGCGGCCATC
GCGTCGGCCTTCGAGGCAGACCTGCCTCCCCGCTCCGGGGATGACGAGGC
ACCCAAAGACAGCGACCTGCGGTTCACCTACAAGGACCCCGATGGAGACA
GCATCGTATTCGACAAGGACTCGGAGCTGAGCCTGGCCCTGCGCCTGTGC
CCCAGCTCGCTTGAGATCTCGGCCGCGGGCAAGGAGAAGGTGAAGCCCGC
CAACAAGCACGACCGCGAACACAGGCTGTACAAGGTGGCCGCCCGTAACC
TCCGCGAGTACAACGGCGTGCCCTCGATGACCCCGACGAAGCTCACCAAG
ACCCTGGCATTCCTCAAGCTGAACCCGCGCCGCCTCGTGAACCAGGGCCT
GGCCCCCCAAGTGCTGCTGGCTGACGTGGAGGACGAAAACGCCAAAAGCA
ACGAGAACACGGCGGCGGCAACGCAGCAGCATCCTCTAGGCGACGACGAC
TGCAACGAGGACCTCGCCGAATCGGTCGCCGCCGGCGTCGAGGCGATGAG
GGTGGAAGATGACGACAAGAAGGAGTGGAACGACGGTTTCGTGTCGGTTG
AGCCCGCCCAGTCAGCCGCCCCAGCCGCCGCGACGGCAGCAGCCGCTGGA
ACTACGACCTCCGATGCCGACGCCGATGGCCCCGCTGCCACCACTGGGGA
CGACGACGGCACCGATACCGATACCGACGCTGATGAGGCCGCCAAGGGAA
AACGCCCCGTGGATCGCCCCGTGCACAAGGCCTTCGTCGCGGGCGGCATC
AAGCTTCTGCCCCGCGAGATCTGGCCCCTGCTCGTCGCCCTGGGCGTCGG
ACCCCGCCGTCTGGTCAAGCTCGGTCACGTGAACGCCGAGCACCTCCGCG
CCATGGCGGTTGCGCACAAGAGGGTGAACAACAAGCAGCAGCGCATGGCC
CGCGGCAGTGCTGGTGCTGCGTGGAACCCCTGGGGGCCTTGCGGCCGCAT
GATGCAGAGGGGCGGCGGTGCTGGTGGTGGTGCTTGCGGCCGCCGCGGTG
CCGTTGCTGCGGGTGCGGGACACAGGATGGGAAAAATGTGCGGCGGCCGT
GGGAAGCCCTGTGGACGAGGCATGATGATAGGCCTCCACCCTCACGCCCC
CGCCTGCCTCCCCCCCCCGCCCCCGTTCCACATGGAGGACGAGGACGGCA
TGTTGTTCGCTCCCGCTCCCCCTGCCGGTGATGGTGGCGGTCGCCACGGT
GGTCGCCGCGGTGGTCACCGTGGTGGTCATGGCGGTCCTCGCTCCCACTC
TCACCCCCACCACGCCCCCCACCACGGCCACCACGCCCCCCACCCCCACC
CCCACGGGTACGGGGACGGAGAGGGAAGGTCCAGTTTTGGCCGCGGCCCC
CTCCCCGGGATGAAGGGAATGCTTCGGGCTCTTGGTCGTCAGCGCCAGCA
CCAGCACCAGCACCAAAGCCTCCCTCGGAAGAATCGATACGAGGGGCGGA
GGACGGAAGGTTTGACGATACGAGAACCATTCCACCCGTCAGGCTTTTGC
GCTCATGCAGTACAACGAACGACAAGCGACGCAGATCATTTTTGGTTTTG
CTTACAAAAAATCGTCCCCACGTCGACGGACGAACGAGTTTTATTTTTAT
TATACGAACGATAG
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