mRNA_P-littoralis_Contig14.46.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig14.46.1
Unique NamemRNA_P-littoralis_Contig14.46.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig14.46.1 vs. uniprot
Match: A0A6H5JH50_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JH50_9PHAE)

HSP 1 Score: 79.3 bits (194), Expect = 3.410e-13
Identity = 59/163 (36.20%), Postives = 82/163 (50.31%), Query Frame = 1 
Query:   40 TRLGPSTLQSIASRLLGRLHCSHGVEKPEPLPVIQNRDKRRKAARDHPGTCGVHQAELTAAVSMESVKATAEKRGSVRTRPSATSVYKERSGRQALLPDFWCLVAEALWQACYDAARSLNVEGMGVQVRRVKCFEKACQALWPGEAPVAQRCAAAFSEDNVQA 528
            T +G +    +AS++ G  +CSH V  PEPL  + +  KR+KAA DHPG CGV+ A + AAV  + V   AEK        + T+  K R+                  QACY+ A ++N  G GVQ+ R +CF +AC+AL PG   +      AF   N  A
Sbjct:  107 TDVGRAFAFEVASKV-GARYCSH-VSAPEPLEDMSHA-KRKKAAADHPGLCGVYHAHIIAAVRTQDV---AEKW-------NQTTGNKYRN------------------QACYNGAEAVNARGAGVQLPRAECFTRACRALLPGSGEMDPLVVEAFHRKNQGA 238
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BLAST of mRNA_P-littoralis_Contig14.46.1 vs. uniprot
Match: A0A6H5L2E9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2E9_9PHAE)

HSP 1 Score: 68.6 bits (166), Expect = 4.390e-10
Identity = 51/151 (33.77%), Postives = 74/151 (49.01%), Query Frame = 1 
Query:   73 ASRLLGRLHCSHGVEKPEPLPVIQNRDKRRKAARDHPGTCGVHQAELTAAVSMESVKATAEKRGSVRTRPSAT-SVYKERSGRQALLPDFWCLVAEALWQACYDAARSLNVEGMGVQVRRVKCFEKACQALWPGEAPVAQRCAAAFSEDNV 522
            A+  +G   C H  + P+ LP    RD+   AA++HPG CG +     A VS + V ATAE+RG      S T +V++                     Q C+DAA+ L  +GMGVQ+ R +CF +A +A++PG     Q     FS +N 
Sbjct:   45 AALAVGAGSCVHD-DPPKALPRGLTRDQGVAAAKEHPGLCGFY----LAGVSYDDVVATAERRG-----VSVTFNVFRN--------------------QCCFDAAKKLRADGMGVQLARKECFTQAFRAVFPGNGTPDQWVETTFSAENA 165
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig14.46.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JH50_9PHAE3.410e-1336.20Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L2E9_9PHAE4.390e-1033.77Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig14contigP-littoralis_Contig14:171991..174779 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1274
Hectar predicted targeting categoryother localisation
Exons3
Cds size360
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789647.138961-UTR-P-littoralis_Contig14:171990..1726761680789647.138961-UTR-P-littoralis_Contig14:171990..172676Pylaiella littoralis U1_48UTRP-littoralis_Contig14 171991..172676 -
1680789647.1851277-UTR-P-littoralis_Contig14:174551..1747791680789647.1851277-UTR-P-littoralis_Contig14:174551..174779Pylaiella littoralis U1_48UTRP-littoralis_Contig14 174552..174779 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789647.1481032-CDS-P-littoralis_Contig14:172676..1728951680789647.1481032-CDS-P-littoralis_Contig14:172676..172895Pylaiella littoralis U1_48CDSP-littoralis_Contig14 172677..172895 -
1680789647.1594005-CDS-P-littoralis_Contig14:173532..1736081680789647.1594005-CDS-P-littoralis_Contig14:173532..173608Pylaiella littoralis U1_48CDSP-littoralis_Contig14 173533..173608 -
1680789647.1707253-CDS-P-littoralis_Contig14:174486..1745511680789647.1707253-CDS-P-littoralis_Contig14:174486..174551Pylaiella littoralis U1_48CDSP-littoralis_Contig14 174487..174551 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig14.46.1prot_P-littoralis_Contig14.46.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig14 172677..174551 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig14.46.1

>prot_P-littoralis_Contig14.46.1 ID=prot_P-littoralis_Contig14.46.1|Name=mRNA_P-littoralis_Contig14.46.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=120bp
MESVKATAEKRGSVRTRPSATSVYKERSGRQALLPDFWCLVAEALWQACY
DAARSLNVEGMGVQVRRVKCFEKACQALWPGEAPVAQRCAAAFSEDNVQA
ESDTEGDGDDASKEPGPED*
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mRNA from alignment at P-littoralis_Contig14:171991..174779-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig14.46.1 ID=mRNA_P-littoralis_Contig14.46.1|Name=mRNA_P-littoralis_Contig14.46.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=2789bp|location=Sequence derived from alignment at P-littoralis_Contig14:171991..174779- (Pylaiella littoralis U1_48)
GAGTTGTACACGAGCAGCTCAAGTTTGTGGCAGAACATCACACGGCTCGG
ACCGAGTACGCTACAATCAATCGCAAGCCGCCTTCTGGGCCGGCTGCACT
GCTCTCACGGCGTGGAGAAGCCCGAGCCTCTCCCTGTCATCCAAAACCGG
GATAAGCGACGCAAGGCGGCGAGGGATCACCCGGGCACCTGCGGCGTGCA
CCAAGCGGAGCTCACAGCTGCTGTCTCGATGGAGTCTGTGAAGGCAACAG
CCGAGAAGCGCGGGAGTGTACGTACAAGACCTTCCGCAACCAGGTGTGTG
AAACAACTGAGAAATCGAGTGCGTCGGATCATCATGAGGTGCAGCGTTAG
CCGCAGGACATGCATGTACAAAAGAAGAGATCAGCAGCAGTACTGCTAAC
ACACTCGAAGTACTTCACGAATCGTGCGCTCCTGTCTGTGTTGACCATCC
TCTTGTTGTTGTGTTACCCCGCCTGGTGCTCCCTCAGAACACTTCGTACA
GCAGCATACGACAGCAGTAGGTTCGCGTCCGAGACATGTGGGACTACAAC
ACGCACACAAACCTACTATCTATGCTATCATTACTGGTAAAACAAAGACA
CACCCACACATGACCCACAAAAAACACACGGACAATAAACGCGGTACAAG
TACTGCTCGAAGCAGTCCTGTATGCGGTGTGCTGAGTGCGGCGCTGTGTG
CGTGCACGCCGTACTCTCTCCCTTCTTCTCTACCTTCACCTCCCTCTGGG
ATTGCACGCTCCAGTTTTGAGTATGAACATACTCTACTACCTGTCTTGCA
GTCTCTGTGGCTGCCGTACGTTCTGTTGTACTTTGTGTGGTAATGTGTGC
TCGGCCCTCGCATGGTGTTCTCGATCGCTTTCTCTCTCTATACATTTATT
TCGTGTGCTGTTTGTCTGCCGCAGCAGTATATCTGCTGCCGAGAGATACA
GGGAGAGAGAGAAAGAGCGAGGGCATACCTGTGTGCGTGATTCGCATCCA
TGTTGTGTGCTGGTCCCTACAGCAGTACGTACTGCGACTGATACCGCTGT
CCTGTGCTCTGCCTGTGTGCTGCTTCGGTACTGCGGCCCGATGGGCCCCT
AAACCTATAAAGCTACGTCTGTGCCTGTTGTCTTGTTTGCCGTTGACCTT
ATCCCTTTGTTATTTGTGCTGTGTCTACAAAGAAAGAAGTGGTCGGCAGG
CTTTGTTGCCGGATTTCTGGTGTTTAGTTGCCGAAGCGTTATGGCAGGTG
CGGCAATATAGTGCACCTGTCACGTGCAGATAGGGGCTGCCTGAAAAATA
TTTTTTCTGCCAAGCCATTTCATACCTTCACGCCTGTGGGTGCACCCTAC
TCGTCTCTGCGCGAAAAGCATCGTGATGGAACAGCCTAACCTAAAATAGC
CTCTACCCCACGACGACGTTCGGAAGAAATTAAGTTGTGAAATCTGATGC
CCCCCCCCCTCTTCAGCTAAGGTGCAAGCGGTACCCCTGGTAACCAACCG
CGCTGCAGCCAACGCGGCGCACTTTTCACTGGCGGCAATAGTATTCGGTA
ATTATTATATTTCCTGCTTCCACATGCACCATGACCAAGACTCGTTATCG
GGGACTACACCACGGTCTCCTCCACTTTGTACGAATTTCGATACGCCTCC
ACTACCAATAATCCACCAGCAATTTCCCTCTGAATGTTACATTTTTGAAT
CATTGTTAAATACGAAGTAGGTTTGTGATGAATCCCCCTCATGATGTCAA
TTTATACGACGAAGTACTTATTTTTGTCAGAGGATGTTTTGCGCAAGATT
TAATCATTTTGCGCTGCCTGTATTTCAAAGCCGCGCCCTACCACAACACC
CAAAATATTTTTCACCCTGCATGATTTCAAACAGGCGTGCTACGATGCGG
CGCGTTCTCTGAATGTCGAAGGCATGGGTGTACAAGTTCGTCGCGTTAAA
TGCTTCGAAAAGGCATGCCAGGCACTTTGGCCCGGAGAAGCTCCAGTAGC
CCAGAGGTGTGCGGCGGCGTTCTCGGAGGATAATGTTCAGGCAGAGTCCG
ACACGGAAGGGGACGGCGACGACGCATCAAAGGAACCCGGCCCCGAAGAC
TAACGTCTGGCGAACGTCGGATGCTCATTAATATCGATGTCTGCTTTACG
AGAGGCCTGAGGAGGAGCGAGTATTGCGCGTCGCCCAACTTTGCTGCCAT
GTTACCTGCAACATGTTTTCTTACGCTAGCATCGCATCGTGGATTATCAT
GCGGGGAATCGGGCCGTCGCCACTTGTGGAGATGTGGGGCTCGAGATGCG
TTTTCCTCTAAGTTGGCATCGGTATTGGTAATCGGTTGCTTAGGTTTCTT
CGTTGCGGGTGACTAACGGTCAGGGCCATGTCGTACTCTGCCTCCAGGTG
TGAGACGAAACTCCTCATCAAGTGTAGAGCTTACAGCAGTGTGACGATGC
ACCCTGTGTTGTGTCTTGAGCTCCACAGGCAAGCCTGTTGAGCGTTGGTG
CCGTATGTTATTTTGAGGAAGCGAAATTCAATAAAAACAACGCCTTGCCG
TCTGAAAAGATGCTGATGCTGGACGTGGTTTCAAGGTTTTGGTGATGCCA
GGGCGGAGGGTGTGCCCTCGTGCCTTCCACGGGTACCAAGGCCGTGGCAC
AGCACAGCAGCAGTGGCATGAATGGTATCTTCATATTTACAGCGTTTTTC
AGTCTCCCGGAGGAATTCCCCCAAGCCACTTACGCAGCCTGGCGGTACCA
GGCCGAGGTTGTATCCCGCTGCAGTCACCTGCTCTCCGG
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Coding sequence (CDS) from alignment at P-littoralis_Contig14:171991..174779-

>mRNA_P-littoralis_Contig14.46.1 ID=mRNA_P-littoralis_Contig14.46.1|Name=mRNA_P-littoralis_Contig14.46.1|organism=Pylaiella littoralis U1_48|type=CDS|length=360bp|location=Sequence derived from alignment at P-littoralis_Contig14:171991..174779- (Pylaiella littoralis U1_48)
ATGGAGTCTGTGAAGGCAACAGCCGAGAAGCGCGGGAGTGTACGTACAAG
ACCTTCCGCAACCAGTGTCTACAAAGAAAGAAGTGGTCGGCAGGCTTTGT
TGCCGGATTTCTGGTGTTTAGTTGCCGAAGCGTTATGGCAGGCGTGCTAC
GATGCGGCGCGTTCTCTGAATGTCGAAGGCATGGGTGTACAAGTTCGTCG
CGTTAAATGCTTCGAAAAGGCATGCCAGGCACTTTGGCCCGGAGAAGCTC
CAGTAGCCCAGAGGTGTGCGGCGGCGTTCTCGGAGGATAATGTTCAGGCA
GAGTCCGACACGGAAGGGGACGGCGACGACGCATCAAAGGAACCCGGCCC
CGAAGACTAA
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