mRNA_P-littoralis_Contig14.268.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig14.268.1
Unique NamemRNA_P-littoralis_Contig14.268.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig14.268.1 vs. uniprot
Match: A0A6H5K5D0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5D0_9PHAE)

HSP 1 Score: 61.6 bits (148), Expect = 3.440e-8
Identity = 29/44 (65.91%), Postives = 32/44 (72.73%), Query Frame = 2 
Query:  392 LNNIFAMSYVPTPLSLQGPDLVEIVLKIKGCVSCGVEAVTGDDW 523
            L N++  + VP      GPDLVE VLKIKGCV CGVEAVTGDDW
Sbjct:   47 LKNVWVTALVP------GPDLVEAVLKIKGCVDCGVEAVTGDDW 84
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BLAST of mRNA_P-littoralis_Contig14.268.1 vs. uniprot
Match: A0A6H5KKU6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKU6_9PHAE)

HSP 1 Score: 55.5 bits (132), Expect = 8.570e-6
Identity = 22/27 (81.48%), Postives = 25/27 (92.59%), Query Frame = 2 
Query:  443 GPDLVEIVLKIKGCVSCGVEAVTGDDW 523
            GP+L E+V+KIKGCV CGVEAVTGDDW
Sbjct:  108 GPNLQEVVIKIKGCVDCGVEAVTGDDW 134
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BLAST of mRNA_P-littoralis_Contig14.268.1 vs. uniprot
Match: A0A6H5JRG8_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRG8_9PHAE)

HSP 1 Score: 55.1 bits (131), Expect = 1.070e-5
Identity = 22/27 (81.48%), Postives = 24/27 (88.89%), Query Frame = 2 
Query:  443 GPDLVEIVLKIKGCVSCGVEAVTGDDW 523
            GPDL E+V+KIKGC  CGVEAVTGDDW
Sbjct:  301 GPDLQEVVIKIKGCEGCGVEAVTGDDW 327
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BLAST of mRNA_P-littoralis_Contig14.268.1 vs. uniprot
Match: A0A6H5JSZ5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSZ5_9PHAE)

HSP 1 Score: 55.1 bits (131), Expect = 1.120e-5
Identity = 22/27 (81.48%), Postives = 24/27 (88.89%), Query Frame = 2 
Query:  443 GPDLVEIVLKIKGCVSCGVEAVTGDDW 523
            GPDL E+V+KIKGC  CGVEAVTGDDW
Sbjct:  405 GPDLQEVVIKIKGCEGCGVEAVTGDDW 431
[Close]
BLAST of mRNA_P-littoralis_Contig14.268.1 vs. uniprot
Match: A0A6H5KK88_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KK88_9PHAE)

HSP 1 Score: 55.1 bits (131), Expect = 1.160e-5
Identity = 22/27 (81.48%), Postives = 24/27 (88.89%), Query Frame = 2 
Query:  443 GPDLVEIVLKIKGCVSCGVEAVTGDDW 523
            GPDL E+V+KIKGC  CGVEAVTGDDW
Sbjct:  607 GPDLQEVVIKIKGCEGCGVEAVTGDDW 633
[Close]
BLAST of mRNA_P-littoralis_Contig14.268.1 vs. uniprot
Match: A0A6H5JJM9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJM9_9PHAE)

HSP 1 Score: 55.1 bits (131), Expect = 1.160e-5
Identity = 22/27 (81.48%), Postives = 24/27 (88.89%), Query Frame = 2 
Query:  443 GPDLVEIVLKIKGCVSCGVEAVTGDDW 523
            GPDL E+V+KIKGC  CGVEAVTGDDW
Sbjct:  565 GPDLQEVVIKIKGCEGCGVEAVTGDDW 591
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig14.268.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A6H5K5D0_9PHAE3.440e-865.91Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KKU6_9PHAE8.570e-681.48Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JRG8_9PHAE1.070e-581.48Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5JSZ5_9PHAE1.120e-581.48Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KK88_9PHAE1.160e-581.48Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JJM9_9PHAE1.160e-581.48Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig14contigP-littoralis_Contig14:1073077..1073599 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size524
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Cds size114
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789653.209412-CDS-P-littoralis_Contig14:1073076..10731901680789653.209412-CDS-P-littoralis_Contig14:1073076..1073190Pylaiella littoralis U1_48CDSP-littoralis_Contig14 1073077..1073190 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789653.2216904-UTR-P-littoralis_Contig14:1073190..10735991680789653.2216904-UTR-P-littoralis_Contig14:1073190..1073599Pylaiella littoralis U1_48UTRP-littoralis_Contig14 1073191..1073599 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig14.268.1prot_P-littoralis_Contig14.268.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig14 1073077..1073190 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig14.268.1

>prot_P-littoralis_Contig14.268.1 ID=prot_P-littoralis_Contig14.268.1|Name=mRNA_P-littoralis_Contig14.268.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=38bp
MSYVPTPLSLQGPDLVEIVLKIKGCVSCGVEAVTGDDW
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mRNA from alignment at P-littoralis_Contig14:1073077..1073599-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig14.268.1 ID=mRNA_P-littoralis_Contig14.268.1|Name=mRNA_P-littoralis_Contig14.268.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=523bp|location=Sequence derived from alignment at P-littoralis_Contig14:1073077..1073599- (Pylaiella littoralis U1_48)
TTTGCAGCCTCGAAGATGTGTGCCCGAAGTGCGACAAGAAGTACGCCCAC
TTGAAGAGTGTGCACGTAACAGCTTTGGTTCCGGTGGGTATAGTCGATTC
AGCGGTTTGGTGAAGTCAGGTCGCTCAGTGTAGTTGGGTGTTTGGCTGAC
TGGGTTTGAAAGATTGGGCAACATTGATATATATCTGCTTGTTAGGGCGG
AAAGTGCCTAGAGGAGACGATTGGGACTGGCGGTAAACCCTGTAACCTGC
AAAAACGTAGCATTTTATATACTGGAAACTGGTGCTCAGACCTTCGGGCG
GGGTATGTGCATTGCGTATTCTTGGGCATGCTGCTGGGCATTGTCTTGTG
AGAAAAATGCCAGGACATGAATTCGTTACGAGCCAACTTGCTTGAACAAT
ATTTTCGCGATGTCTTACGTTCCCACTCCTCTATCTCTTCAGGGGCCTGA
CCTCGTGGAAATCGTGCTGAAGATCAAGGGCTGTGTCAGCTGTGGCGTGG
AAGCTGTGACGGGTGATGACTGG
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Coding sequence (CDS) from alignment at P-littoralis_Contig14:1073077..1073599-

>mRNA_P-littoralis_Contig14.268.1 ID=mRNA_P-littoralis_Contig14.268.1|Name=mRNA_P-littoralis_Contig14.268.1|organism=Pylaiella littoralis U1_48|type=CDS|length=114bp|location=Sequence derived from alignment at P-littoralis_Contig14:1073077..1073599- (Pylaiella littoralis U1_48)
ATGTCTTACGTTCCCACTCCTCTATCTCTTCAGGGGCCTGACCTCGTGGA
AATCGTGCTGAAGATCAAGGGCTGTGTCAGCTGTGGCGTGGAAGCTGTGA
CGGGTGATGACTGG
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