mRNA_P-littoralis_Contig14.239.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig14.239.1
Unique NamemRNA_P-littoralis_Contig14.239.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig14.239.1 vs. uniprot
Match: A0A6H5K9X5_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9X5_9PHAE)

HSP 1 Score: 52.8 bits (125), Expect = 4.200e-6
Identity = 21/27 (77.78%), Postives = 22/27 (81.48%), Query Frame = 3 
Query:    3 CVLHNMLHAFDGLDELEPTVEWGGKEG 83
            C LHNMLHAFDGLDELE   EWGG+ G
Sbjct:  424 CTLHNMLHAFDGLDELESAEEWGGRAG 450
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BLAST of mRNA_P-littoralis_Contig14.239.1 vs. uniprot
Match: A0A6H5KML5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KML5_9PHAE)

HSP 1 Score: 50.8 bits (120), Expect = 1.270e-5
Identity = 20/27 (74.07%), Postives = 22/27 (81.48%), Query Frame = 3 
Query:    3 CVLHNMLHAFDGLDELEPTVEWGGKEG 83
            C LH+MLHAFDGLDELE   EWGG+ G
Sbjct:   55 CTLHSMLHAFDGLDELETVKEWGGRAG 81
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BLAST of mRNA_P-littoralis_Contig14.239.1 vs. uniprot
Match: A0A6H5L2M7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2M7_9PHAE)

HSP 1 Score: 47.8 bits (112), Expect = 6.690e-5
Identity = 18/27 (66.67%), Postives = 21/27 (77.78%), Query Frame = 3 
Query:    3 CVLHNMLHAFDGLDELEPTVEWGGKEG 83
            C  HN+LHAFDGLDELE   +WGG+ G
Sbjct:   50 CTSHNVLHAFDGLDELETVEDWGGRAG 76
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig14.239.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5K9X5_9PHAE4.200e-677.78DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5KML5_9PHAE1.270e-574.07Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L2M7_9PHAE6.690e-566.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig14contigP-littoralis_Contig14:958812..959091 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size249
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Cds size150
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789645.7265866-UTR-P-littoralis_Contig14:958811..9588931680789645.7265866-UTR-P-littoralis_Contig14:958811..958893Pylaiella littoralis U1_48UTRP-littoralis_Contig14 958812..958893 -
1680789645.7569005-UTR-P-littoralis_Contig14:959074..9590911680789645.7569005-UTR-P-littoralis_Contig14:959074..959091Pylaiella littoralis U1_48UTRP-littoralis_Contig14 959075..959091 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789645.735856-CDS-P-littoralis_Contig14:958893..9589761680789645.735856-CDS-P-littoralis_Contig14:958893..958976Pylaiella littoralis U1_48CDSP-littoralis_Contig14 958894..958976 -
1680789645.7475667-CDS-P-littoralis_Contig14:959007..9590741680789645.7475667-CDS-P-littoralis_Contig14:959007..959074Pylaiella littoralis U1_48CDSP-littoralis_Contig14 959008..959074 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig14.239.1prot_P-littoralis_Contig14.239.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig14 958894..959074 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig14.239.1

>prot_P-littoralis_Contig14.239.1 ID=prot_P-littoralis_Contig14.239.1|Name=mRNA_P-littoralis_Contig14.239.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=50bp
MLHAFDGLDELEPTVEWGGKEGRMRVPQEAGVCRSTMTPPPTIKRSISC*
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mRNA from alignment at P-littoralis_Contig14:958812..959091-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig14.239.1 ID=mRNA_P-littoralis_Contig14.239.1|Name=mRNA_P-littoralis_Contig14.239.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=280bp|location=Sequence derived from alignment at P-littoralis_Contig14:958812..959091- (Pylaiella littoralis U1_48)
GCTGTGTCTTGCACAACATGTTGCATGCGTTCGATGGGCTTGATGAGCTC
GAGCCTACCGTGGAGTGGGGGGGGAAGGAGGGTCTTCACGATCCCTGGGA
CAATCCGCCTCGGTTGGATGAGAGTACCACAGGAAGCAGGAGTATGCCGG
TCCACGATGACACCACCGCCAACGATAAAGAGAAGCATTTCTTGTTGAGA
ATCAGTTGGTACAACACTTTAAATCTCGAAGACAGAACGGCGACATTCGG
TGGCTGAAACACAAAGCGCCCGGTCGCCGG
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Coding sequence (CDS) from alignment at P-littoralis_Contig14:958812..959091-

>mRNA_P-littoralis_Contig14.239.1 ID=mRNA_P-littoralis_Contig14.239.1|Name=mRNA_P-littoralis_Contig14.239.1|organism=Pylaiella littoralis U1_48|type=CDS|length=150bp|location=Sequence derived from alignment at P-littoralis_Contig14:958812..959091- (Pylaiella littoralis U1_48)
ATGTTGCATGCGTTCGATGGGCTTGATGAGCTCGAGCCTACCGTGGAGTG
GGGGGGGAAGGAGGGTCGGATGAGAGTACCACAGGAAGCAGGAGTATGCC
GGTCCACGATGACACCACCGCCAACGATAAAGAGAAGCATTTCTTGTTGA
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