mRNA_P-littoralis_Contig14.235.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig14.235.1
Unique NamemRNA_P-littoralis_Contig14.235.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig14.235.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig14contigP-littoralis_Contig14:953461..955008 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size702
Hectar predicted targeting categoryother localisation
Exons2
Cds size540
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789645.663126-CDS-P-littoralis_Contig14:953460..9537881680789645.663126-CDS-P-littoralis_Contig14:953460..953788Pylaiella littoralis U1_48CDSP-littoralis_Contig14 953461..953788 -
1680789645.6747594-CDS-P-littoralis_Contig14:954635..9548471680789645.6747594-CDS-P-littoralis_Contig14:954635..954847Pylaiella littoralis U1_48CDSP-littoralis_Contig14 954636..954847 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789645.6841471-UTR-P-littoralis_Contig14:954847..9550081680789645.6841471-UTR-P-littoralis_Contig14:954847..955008Pylaiella littoralis U1_48UTRP-littoralis_Contig14 954848..955008 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig14.235.1prot_P-littoralis_Contig14.235.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig14 953461..954847 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig14.235.1

>prot_P-littoralis_Contig14.235.1 ID=prot_P-littoralis_Contig14.235.1|Name=mRNA_P-littoralis_Contig14.235.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=180bp
MMAEILRQGQAHMMRGLDAVRLSTGEDDDETDDPRDPSGWSAPAVLRQFF
KNFGPLPVGGGDAEHRQFLVRGRQRHYEFAIEARGGVPHVEDLNTLEAAE
SYLKPYLFSEVGDDGDGADSHDNGASDAGEAKDGNNDGGDGGAGSSDTHD
TGAYGGAGAGAGAGSDNGDARIPRTAIPAI
back to top

mRNA from alignment at P-littoralis_Contig14:953461..955008-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig14.235.1 ID=mRNA_P-littoralis_Contig14.235.1|Name=mRNA_P-littoralis_Contig14.235.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1548bp|location=Sequence derived from alignment at P-littoralis_Contig14:953461..955008- (Pylaiella littoralis U1_48)
GTGACTAGAAATGGATGTCATTCTTGCCGTACTATTAGGATACTGCGTCG
ACTGTCCTAGCCTTCACGCCGTGCATCCGGGGAAATATGCTCAATAATTG
CATGTGTTGACTTCTACCCTCACGCGCAATCCCCTTGGTGCGACGACAGG
TCCCGCACCCGATGATGGCGGAGATCCTGCGCCAGGGACAGGCCCACATG
ATGCGTGGTCTCGACGCGGTGCGGCTGTCCACGGGGGAAGACGACGACGA
GACCGACGACCCGCGAGACCCTTCCGGCTGGTCAGCGCCTGCTGTCCTCC
GCCAGTTCTTTAAGAACTTCGGCCCGCTCCCGGTTGGTGGAGGCGACGCA
GAGCACCGCCAGTTCCTCGTAAGGTAAGATGAGTTGCCAATTAGGCACTT
GGTACGGGTACCGCTACTGTTCGTGACGAAACAGTCGCTTCACGCTATAG
AAACAATCCAAGTAACTGAGGCTATTAGAGGGGGGGGGGTTGTTGTGGGT
TTTTAGTTTCATGCACTACGCTGTCGTTTCAACGATCACAAGGGTTTATA
TTTTGTACAAGAATAATTGTTCTTGAATATTTTTATTGATCTTCATGTTT
GTTGTAACGGCTAGCAGGCTGAAATGAAAAACAATGGATATCAGCCACCA
TCCCTATCGACGGCACGAAAAAGGAGTGAACTTGATTTGGGTGCAAGGGG
GTTGTATGATATACCCAGATACATACTGTATACGAAGTATATATTTTGTC
ACATGCTCATTGCTTGCAGCATGAAGCTGTTTATTGCGGCGTTCATGGGC
TCGCTTGTTGGGTGGTATCGGCATGGATGGACTGCGTCCCTGACCTGCTG
ATACCCCACTCTGTCCGTTCTACCCGCTCGTCGATTCTTCAGCGCTTGCG
TATCACTCGGTCGAGCCAACGGAGAATGCTTTCAACACATTTTTACCTAT
CTCTTCTTGTAAGGAGGCGCCTTTTGGGCCTGCGGCTATTATGCCATGGT
TCCTGTTTATATAAACAAAAAGTAAAAAAACAAATAGGCTTCACCACCTG
GAGGAAAGAGATACAATTCGAACTGGAACAATCGAAATCTGGACAATTAC
CAAGCACATTATTTTTATCGACACGCAACGTAGACTATGCCCGTTCGCTC
TGAGTGCTGTGCGTCGTGCTTTTTTCCCCACTCTTATTTGCGCTTGACTC
GCGCTGCTTGAACGCCACAGGGGCCGCCAGCGGCACTACGAGTTCGCCAT
CGAGGCTCGGGGCGGAGTACCCCACGTGGAGGACCTCAACACCCTCGAGG
CGGCGGAGTCTTACCTCAAGCCGTACCTGTTTAGTGAGGTTGGGGACGAC
GGTGACGGAGCGGACAGCCACGACAACGGCGCCAGCGACGCCGGCGAAGC
CAAAGACGGGAACAACGATGGTGGTGACGGCGGCGCAGGCAGTTCCGACA
CTCACGACACCGGTGCGTACGGTGGAGCCGGTGCTGGAGCCGGTGCGGGC
AGCGACAACGGCGACGCCCGCATTCCGAGGACGGCGATACCCGCAATT
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig14:953461..955008-

>mRNA_P-littoralis_Contig14.235.1 ID=mRNA_P-littoralis_Contig14.235.1|Name=mRNA_P-littoralis_Contig14.235.1|organism=Pylaiella littoralis U1_48|type=CDS|length=540bp|location=Sequence derived from alignment at P-littoralis_Contig14:953461..955008- (Pylaiella littoralis U1_48)
ATGATGGCGGAGATCCTGCGCCAGGGACAGGCCCACATGATGCGTGGTCT
CGACGCGGTGCGGCTGTCCACGGGGGAAGACGACGACGAGACCGACGACC
CGCGAGACCCTTCCGGCTGGTCAGCGCCTGCTGTCCTCCGCCAGTTCTTT
AAGAACTTCGGCCCGCTCCCGGTTGGTGGAGGCGACGCAGAGCACCGCCA
GTTCCTCGTAAGGGGCCGCCAGCGGCACTACGAGTTCGCCATCGAGGCTC
GGGGCGGAGTACCCCACGTGGAGGACCTCAACACCCTCGAGGCGGCGGAG
TCTTACCTCAAGCCGTACCTGTTTAGTGAGGTTGGGGACGACGGTGACGG
AGCGGACAGCCACGACAACGGCGCCAGCGACGCCGGCGAAGCCAAAGACG
GGAACAACGATGGTGGTGACGGCGGCGCAGGCAGTTCCGACACTCACGAC
ACCGGTGCGTACGGTGGAGCCGGTGCTGGAGCCGGTGCGGGCAGCGACAA
CGGCGACGCCCGCATTCCGAGGACGGCGATACCCGCAATT
back to top