mRNA_P-littoralis_Contig14.200.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig14.200.1
Unique NamemRNA_P-littoralis_Contig14.200.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig14.200.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig14contigP-littoralis_Contig14:812266..814816 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size1366
Hectar predicted targeting categorysignal peptide
Exons3
Cds size966
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789645.6051497-UTR-P-littoralis_Contig14:812265..8125641680789645.6051497-UTR-P-littoralis_Contig14:812265..812564Pylaiella littoralis U1_48UTRP-littoralis_Contig14 812266..812564 +
1680789645.6142867-UTR-P-littoralis_Contig14:813490..8135891680789645.6142867-UTR-P-littoralis_Contig14:813490..813589Pylaiella littoralis U1_48UTRP-littoralis_Contig14 813491..813589 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789645.6226943-CDS-P-littoralis_Contig14:813589..8137271680789645.6226943-CDS-P-littoralis_Contig14:813589..813727Pylaiella littoralis U1_48CDSP-littoralis_Contig14 813590..813727 +
1680789645.6335716-CDS-P-littoralis_Contig14:813988..8148161680789645.6335716-CDS-P-littoralis_Contig14:813988..814816Pylaiella littoralis U1_48CDSP-littoralis_Contig14 813989..814816 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig14.200.1prot_P-littoralis_Contig14.200.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig14 813590..814816 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig14.200.1

>prot_P-littoralis_Contig14.200.1 ID=prot_P-littoralis_Contig14.200.1|Name=mRNA_P-littoralis_Contig14.200.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=322bp
MLANAGMLTTAAASAAGAAADMLPHPDDRRNLAASSSSPTPPPSAPSTTE
TCVSPGSKAAGSGNSKDAGKPTTAPAAPAAAAVAGAAGGDAETSDRKKTA
GGCGAGAENKAKEVVPTSGTSPTSSPAILSKTREEGSEAAAAAGAAAAVA
PEDASSKNAAEGASATTDSNDKKSDGTGLGSTAGTTAAKRAAPETAAGDA
MEVDESSTTTKTPPPPAPAVDKITPNRSSPAPAAPAPAPAVGEKPVPQQH
QHQQQQQQQQVIAPINPVVGAAAAAAAAAAAAAAAAAAAAAAAATTAAPV
PMEDETPGPANRVSQEEIAPAS
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mRNA from alignment at P-littoralis_Contig14:812266..814816+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig14.200.1 ID=mRNA_P-littoralis_Contig14.200.1|Name=mRNA_P-littoralis_Contig14.200.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=2551bp|location=Sequence derived from alignment at P-littoralis_Contig14:812266..814816+ (Pylaiella littoralis U1_48)
CACAGCTTTACCCCGGACCCAGCACCCAGAACGTGTACATCGGATCAAGG
CAACACCGCAACCACCAGTTAATACAATCCACGGCAGGCTTCTATTGAAT
CTGGAAGTGACATTCTGCGAGTGCGGCTAGGTAGTTGGCACAGAGTGCTG
TGTGAGCACCAGTCTCGCTCCTTACTTGCTGTGCTGCTGTGCGTTTCAAC
TCCAGGACCTTTCCACCACCACAGCAGGACAGGACACAGCCTCTGCTTGT
TGAGCGCCCAGTGCTCAACTCAGGCAGCACCCAGCAGCCCTCAGACCAGG
TGTGTATCGAGCGTGCGTTTATCCAAACGGGCAGCCTTGGCAAAGCTCCA
ATTTGCGCCCGTCGTGCGTTGTCGGGGTCTGCTTCTTTCTCTTGATTCGC
CATCGCGATGTGTGTAGGTAACGCCCTCGAAATCGGCGAAGCACCGCAAC
AGCAACACAGCGGAGCCAGTAGCAGCGGCGGAGGCAGCGCCGGTAGGGGC
TAGCGATCTGAATCCAGTCCCCTTGTACTGCTAGTTGTCCGTCTGTGGGG
TATGCGTAGGAGCCTCCGTTGATGCACAGGCCACTGTAGGGTCTTGGGTC
ATGCCGTGGCTGGTCTCCTGGAGCTTTTGTGTTTCACTCACACATACACT
CAAGAGATACGCGGAGAGAGGTTTAGATGACCGTTTGAGCGCGGTTTCTC
CGTCCGAAAATTGTTGTTGAGCCAGTTCGATCGAGCCAACAAGCCACCAC
AGCACACACAACGTGCAGCGTTGGCCTTGTCATGTGTGCTAGCTCTTCCC
CATCTTCCGTAAGTTCCTCTGGTCCCAATCGTTTGACCGACCGTTGCCGC
GCAGTCTATCGTTGCACACCAGGCAGCAGAGCAGAGAGACACCTTACACA
CACGCATACGCTTGAAAAAATCGATCTGGCTTTTTCCGTCTTTTGACTCT
GAATCTCAATGCAAAGACAAGAATGTGCGCGCGCGGCGATAATTTGTGTT
TTTATTTTTATTTTGGACATGACTTGATGATGATTGTATACTGTTTACAA
GTACTGCTGTAATATATGTATAATATGATATACCACTCAGTAATACTTCG
AAGTATGATACAAGCATGTGTGTGTCGCGTGTCCTACATTTCGTTCTCAC
ATTTTTTTTAGGCATTTGGGTGTGTGACTCTGATGGAATTTTTGACGCTC
TCTCCCTCGTCCATGGTTCCGGCAGGAAGGGTTGCCGACGAGGCCTTTCC
CTCCCCACGTGCGTGCCAAGGGCTCGGCTCGGAAGAAGACCAAGGATAGA
CTCCGCAAGGATAACGTGGCCGGTATGCTCGCCAACGCTGGCATGTTGAC
CACCGCAGCAGCATCAGCAGCAGGAGCAGCAGCTGACATGCTACCGCACC
CCGATGATCGGCGAAATCTCGCCGCATCATCGTCATCACCAACACCACCC
CCTTCTGCTCCTGCCCCCGGCAGTAACAGCAGCAGCAACAACAGCAGCAG
CAGCAGCATAAGCGCCAGCGCATCATCACAAACGGCTACGGAACCGTCGC
CAACAAACGCAAAAAATGTCCTGGGCGAGGAGCGATCTCCCACCAGTGGC
GCCGGTGATGATGCAACATCGTCCTCAGAGGCGAAGAAAGCCGATAGCAA
TCATAGACCAGGTGTTGATGGTGGTTGCTCTGGTGGTGGTTCTGCTGCGG
GTGCTGCTGCTGTTGATGGGAAGAGCACAACCGAGACGTGTGTTTCTCCT
GGGTCAAAGGCGGCCGGCAGCGGTAATAGCAAGGACGCGGGTAAGCCGAC
AACAGCACCAGCAGCACCAGCGGCAGCAGCAGTAGCAGGAGCTGCAGGCG
GTGATGCCGAGACCAGTGACAGGAAGAAAACTGCAGGCGGCTGCGGGGCC
GGTGCGGAGAACAAAGCAAAAGAAGTAGTACCGACCTCTGGAACCAGTCC
AACATCGAGCCCTGCTATTTTATCCAAGACGCGGGAGGAAGGATCAGAAG
CAGCAGCAGCAGCAGGAGCAGCAGCAGCGGTAGCACCCGAGGATGCCTCG
AGTAAAAACGCTGCAGAGGGGGCATCGGCCACCACCGACTCGAACGACAA
AAAATCGGACGGGACAGGATTGGGATCCACAGCAGGAACAACAGCAGCAA
AACGAGCAGCACCAGAAACTGCTGCTGGTGATGCGATGGAGGTAGACGAG
AGCAGCACCACCACCAAGACACCACCACCACCAGCACCAGCGGTAGATAA
AATAACGCCGAATAGATCCTCGCCAGCACCAGCAGCACCAGCACCAGCAC
CAGCTGTGGGCGAGAAACCCGTCCCTCAACAGCACCAGCACCAACAACAA
CAACAGCAGCAGCAGGTAATCGCACCGATTAATCCCGTCGTAGGAGCGGC
AGCTGCGGCGGCGGCCGCGGCAGCGGCTGCTGCTGCTGCTGCTGCGGCGG
CGGCGGCGGCAGCAGCTACGACCGCGGCCCCGGTGCCGATGGAGGACGAA
ACACCCGGCCCGGCCAATAGGGTGTCTCAGGAGGAAATTGCGCCAGCCTC
G
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Coding sequence (CDS) from alignment at P-littoralis_Contig14:812266..814816+

>mRNA_P-littoralis_Contig14.200.1 ID=mRNA_P-littoralis_Contig14.200.1|Name=mRNA_P-littoralis_Contig14.200.1|organism=Pylaiella littoralis U1_48|type=CDS|length=966bp|location=Sequence derived from alignment at P-littoralis_Contig14:812266..814816+ (Pylaiella littoralis U1_48)
ATGCTCGCCAACGCTGGCATGTTGACCACCGCAGCAGCATCAGCAGCAGG
AGCAGCAGCTGACATGCTACCGCACCCCGATGATCGGCGAAATCTCGCCG
CATCATCGTCATCACCAACACCACCCCCTTCTGCTCCTAGCACAACCGAG
ACGTGTGTTTCTCCTGGGTCAAAGGCGGCCGGCAGCGGTAATAGCAAGGA
CGCGGGTAAGCCGACAACAGCACCAGCAGCACCAGCGGCAGCAGCAGTAG
CAGGAGCTGCAGGCGGTGATGCCGAGACCAGTGACAGGAAGAAAACTGCA
GGCGGCTGCGGGGCCGGTGCGGAGAACAAAGCAAAAGAAGTAGTACCGAC
CTCTGGAACCAGTCCAACATCGAGCCCTGCTATTTTATCCAAGACGCGGG
AGGAAGGATCAGAAGCAGCAGCAGCAGCAGGAGCAGCAGCAGCGGTAGCA
CCCGAGGATGCCTCGAGTAAAAACGCTGCAGAGGGGGCATCGGCCACCAC
CGACTCGAACGACAAAAAATCGGACGGGACAGGATTGGGATCCACAGCAG
GAACAACAGCAGCAAAACGAGCAGCACCAGAAACTGCTGCTGGTGATGCG
ATGGAGGTAGACGAGAGCAGCACCACCACCAAGACACCACCACCACCAGC
ACCAGCGGTAGATAAAATAACGCCGAATAGATCCTCGCCAGCACCAGCAG
CACCAGCACCAGCACCAGCTGTGGGCGAGAAACCCGTCCCTCAACAGCAC
CAGCACCAACAACAACAACAGCAGCAGCAGGTAATCGCACCGATTAATCC
CGTCGTAGGAGCGGCAGCTGCGGCGGCGGCCGCGGCAGCGGCTGCTGCTG
CTGCTGCTGCGGCGGCGGCGGCGGCAGCAGCTACGACCGCGGCCCCGGTG
CCGATGGAGGACGAAACACCCGGCCCGGCCAATAGGGTGTCTCAGGAGGA
AATTGCGCCAGCCTCG
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