mRNA_P-littoralis_Contig14.182.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig14.182.1
Unique NamemRNA_P-littoralis_Contig14.182.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig14.182.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig14contigP-littoralis_Contig14:752053..753136 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size905
Hectar predicted targeting categoryother localisation
Exons2
Cds size804
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789651.2712657-UTR-P-littoralis_Contig14:752052..7521501680789651.2712657-UTR-P-littoralis_Contig14:752052..752150Pylaiella littoralis U1_48UTRP-littoralis_Contig14 752053..752150 +
1680789651.2847562-UTR-P-littoralis_Contig14:752329..7523321680789651.2847562-UTR-P-littoralis_Contig14:752329..752332Pylaiella littoralis U1_48UTRP-littoralis_Contig14 752330..752332 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789651.2969193-CDS-P-littoralis_Contig14:752332..7531361680789651.2969193-CDS-P-littoralis_Contig14:752332..753136Pylaiella littoralis U1_48CDSP-littoralis_Contig14 752333..753136 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig14.182.1prot_P-littoralis_Contig14.182.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig14 752333..753136 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig14.182.1

>prot_P-littoralis_Contig14.182.1 ID=prot_P-littoralis_Contig14.182.1|Name=mRNA_P-littoralis_Contig14.182.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=268bp
MRGGKRRKGRRVPAMVSVALRQVHGWGRQSGPAQWYMYQSRHRANNYFWR
RVFEQKLMQVCTNAWLSFRWWLDDVQRKLKAEIDRLEAGGAAERDGTADG
LLVGQLKEESKAFEALTKQSRAQWMRALGVHLMSSSRLGNLVRGRRALGN
FGPIRTLKQRSADRTPLARLDGQRFTCEAKNCSARLSTKPNRKYTRGKKV
GTACRCKVCKKVANGGVAMSHECYNTPAKRKSALESAQTTGRKRPELSGA
IRPPENRLDNMCSSAQR*
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mRNA from alignment at P-littoralis_Contig14:752053..753136+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig14.182.1 ID=mRNA_P-littoralis_Contig14.182.1|Name=mRNA_P-littoralis_Contig14.182.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1084bp|location=Sequence derived from alignment at P-littoralis_Contig14:752053..753136+ (Pylaiella littoralis U1_48)
GGGACCTTGGTGTTCACAAACTGGCAGGACTCCAAGCTCGTACGGTTCCT
CTCCACGATCCATATCACGCCAGAACACTTCATCACACGGGTGTACAGGT
GAGAGAAACGGCCTCCCGTCCAAGGTTGCAAAGTGATCATTGTTCGTGTT
GCCTTCTCAGGTCTTTTTGTCTGGACTATCCACTTCGCCGAGCCGACTTT
CAAAGCAATGCTCTCAACCCGAATCCCCACCCGCTGTCTATTTGGTGCCC
CTTGCCGCATTCGTTATTTTTGAACAGTAAATGCGTGGCGGGAAAAGACG
GAAAGGAAGGCGGGTTCCAGCCATGGTGTCGGTTGCATTACGACAAGTTC
ATGGGTGGGGTAGACAAAGCGGACCAGCACAATGGTATATGTACCAGTCC
CGACACCGAGCGAATAACTACTTCTGGCGCCGGGTTTTTGAGCAAAAGCT
GATGCAAGTCTGCACGAATGCGTGGCTGTCGTTTCGTTGGTGGTTAGATG
ATGTGCAAAGGAAGCTGAAGGCTGAGATTGACAGATTGGAAGCCGGGGGG
GCGGCCGAACGCGACGGTACCGCCGATGGGTTATTGGTTGGACAACTGAA
GGAAGAAAGTAAGGCATTTGAGGCATTGACTAAGCAGAGTAGGGCTCAGT
GGATGAGGGCACTCGGCGTTCACCTCATGTCATCGTCTAGATTGGGCAAC
TTAGTCAGGGGGCGCCGAGCCCTCGGGAATTTTGGCCCTATCCGTACGTT
GAAGCAGCGGAGTGCTGACAGGACCCCCCTAGCGAGACTAGACGGCCAAA
GGTTTACTTGTGAGGCGAAGAATTGCAGCGCTCGCCTCTCAACAAAGCCC
AACCGAAAATACACGCGTGGCAAGAAAGTCGGTACCGCCTGTAGATGCAA
AGTTTGCAAGAAGGTCGCGAACGGAGGTGTGGCCATGTCCCACGAGTGTT
ACAACACCCCAGCAAAACGCAAGTCGGCGTTGGAATCGGCTCAAACGACC
GGCAGAAAGCGGCCGGAGTTGAGTGGTGCAATCCGACCCCCGGAAAATCG
CCTTGACAACATGTGTTCTTCCGCACAGCGGTAG
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Coding sequence (CDS) from alignment at P-littoralis_Contig14:752053..753136+

>mRNA_P-littoralis_Contig14.182.1 ID=mRNA_P-littoralis_Contig14.182.1|Name=mRNA_P-littoralis_Contig14.182.1|organism=Pylaiella littoralis U1_48|type=CDS|length=804bp|location=Sequence derived from alignment at P-littoralis_Contig14:752053..753136+ (Pylaiella littoralis U1_48)
ATGCGTGGCGGGAAAAGACGGAAAGGAAGGCGGGTTCCAGCCATGGTGTC
GGTTGCATTACGACAAGTTCATGGGTGGGGTAGACAAAGCGGACCAGCAC
AATGGTATATGTACCAGTCCCGACACCGAGCGAATAACTACTTCTGGCGC
CGGGTTTTTGAGCAAAAGCTGATGCAAGTCTGCACGAATGCGTGGCTGTC
GTTTCGTTGGTGGTTAGATGATGTGCAAAGGAAGCTGAAGGCTGAGATTG
ACAGATTGGAAGCCGGGGGGGCGGCCGAACGCGACGGTACCGCCGATGGG
TTATTGGTTGGACAACTGAAGGAAGAAAGTAAGGCATTTGAGGCATTGAC
TAAGCAGAGTAGGGCTCAGTGGATGAGGGCACTCGGCGTTCACCTCATGT
CATCGTCTAGATTGGGCAACTTAGTCAGGGGGCGCCGAGCCCTCGGGAAT
TTTGGCCCTATCCGTACGTTGAAGCAGCGGAGTGCTGACAGGACCCCCCT
AGCGAGACTAGACGGCCAAAGGTTTACTTGTGAGGCGAAGAATTGCAGCG
CTCGCCTCTCAACAAAGCCCAACCGAAAATACACGCGTGGCAAGAAAGTC
GGTACCGCCTGTAGATGCAAAGTTTGCAAGAAGGTCGCGAACGGAGGTGT
GGCCATGTCCCACGAGTGTTACAACACCCCAGCAAAACGCAAGTCGGCGT
TGGAATCGGCTCAAACGACCGGCAGAAAGCGGCCGGAGTTGAGTGGTGCA
ATCCGACCCCCGGAAAATCGCCTTGACAACATGTGTTCTTCCGCACAGCG
GTAG
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